3N1LA

Crystal structure of a stwhy2-rcere32 complex
Total Genus 32
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
161
structure length
161
Chain Sequence
GRVFAPYSVFKGKAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSLISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFSFALPHIMGWDRFTNR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Dna binding protein/dna
molecule keywords protein StWhy2
publication title Crystal Structures of DNA-Whirly Complexes and Their Role in Arabidopsis Organelle Genome Repair.
pubmed doi rcsb
source organism Solanum tuberosum
total genus 32
structure length 161
sequence length 161
ec nomenclature
pdb deposition date 2010-05-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08536 Whirly Whirly transcription factor
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.31.10 Mainly Beta Roll Transcriptional Co-activator pc4; Chain A Transcriptional Coactivator Pc4; Chain A 3n1lA00
3RA0A 4KOOA 3R9ZA 4BG7A 2PHEA 2NVNA 2IT9A 3N1HA 3R9YA 3N1LA 4KOPA 4BHMA 4AGHA 1PCFA 3N1KA 1L3AA 4KOQA 4USGA 3N1JA 2C62A 3N1IA
chains in the Genus database with same CATH superfamily
3RA0A 4KOOA 3R9ZA 4BG7A 3OBHA 2PHEA 2NVNA 2IT9A 3N1HA 3K44A 3R9YA 4J38A 3N1LA 2GIAB 2GIAA 4BOBA 4KOPA 3MTVA 4BHMA 4BODA 4AGHA 1PCFA 3N1KA 4BF3A 2M4FA 1L3AA 4KOQA 3CM1A 4USGA 2GJED 3N1JA 2GIDB 2GIDA 2GJEA 2C62A 4BXMA 3N1IA 5FGPA
chains in the Genus database with same CATH topology
3RA0A 4KOOA 3R9ZA 4BG7A 2PHEA 2NVNA 2IT9A 3N1HA 3R9YA 3N1LA 4KOPA 4BHMA 4AGHA 1PCFA 3N1KA 1L3AA 4KOQA 4USGA 3N1JA 2C62A 3N1IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RA0 A;  4KOO A;  3R9Z A;  4BG7 A;  2PHE A;  2NVN A;  2IT9 A;  3N1H A;  3R9Y A;  3N1L A;  4KOP A;  4BHM A;  4AGH A;  1PCF A;  3N1K A;  1L3A A;  4KOQ A;  4USG A;  3N1J A;  2C62 A;  3N1I A; 
#chains in the Genus database with same CATH topology
 3RA0 A;  4KOO A;  3R9Z A;  4BG7 A;  3OBH A;  2PHE A;  2NVN A;  2IT9 A;  3N1H A;  3K44 A;  3R9Y A;  4J38 A;  3N1L A;  2GIA B;  2GIA A;  4BOB A;  4KOP A;  3MTV A;  4BHM A;  4BOD A;  4AGH A;  1PCF A;  3N1K A;  4BF3 A;  2M4F A;  1L3A A;  4KOQ A;  3CM1 A;  4USG A;  2GJE D;  3N1J A;  2GID B;  2GID A;  2GJE A;  2C62 A;  4BXM A;  3N1I A;  5FGP A; 
#chains in the Genus database with same CATH homology
 3RA0 A;  4KOO A;  3R9Z A;  4BG7 A;  2PHE A;  2NVN A;  2IT9 A;  3N1H A;  3R9Y A;  3N1L A;  4KOP A;  4BHM A;  4AGH A;  1PCF A;  3N1K A;  1L3A A;  4KOQ A;  4USG A;  3N1J A;  2C62 A;  3N1I A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...