3N1RA

Crystal structure of shhn
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
150
structure length
150
Chain Sequence
LTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCSVKAE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Sonic hedgehog protein
publication title Crystal Structure of ShhN
rcsb
source organism Mus musculus
total genus 43
structure length 150
sequence length 150
ec nomenclature
pdb deposition date 2010-05-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1380.10 Alpha Beta 2-Layer Sandwich Muramoyl-pentapeptide Carboxypeptidase; domain 2 Muramoyl-pentapeptide Carboxypeptidase; domain 2 3n1rA00
1TZPA 4D0YA 3HO5H 3N1GA 4MUTA 3N1PB 3K7JB 3D1MA 2WFXA 1VHHA 4OXDA 1LBUA 3MXWA 2WFRA 3N1MB 4OX3A 2IBGE 4MURA 2WG3A 4JIDA 5HNMA 4NT9A 3N1FA 3K7IB 3K7GB 3K7HB 4C4NA 3N1OA 4F78A 1U10A 4MUSA 2WFQA 4C4MA 2VO9A 3M1NA 4OX5A 1R44A 2WG4A 3N1RA 4MPHA 4OAKA 3N1QA 4MUQA
chains in the Genus database with same CATH superfamily
1TZPA 2J3WD 3HO5H 3N1GA 4MUTA 4D0YA 3N1PB 2CFHC 2PWNA 2J3TB 3D1MA 2WFXA 3K7JB 1VHHA 4OXDA 1LBUA 3MXWA 2WFRA 3N1MB 3NJCA 2C0JA 3KXCA 4OX3A 2IBGE 2BJNA 4MURA 1WC8A 2WG3A 3CUEB 4JIDA 4NT9A 2J3RA 5HNMA 3CUED 3KXCC 3N1FA 2OSOA 3K7IB 2C0JB 2J3TA 1WC9A 3K7GB 3K7HB 4C4NA 3N1OA 4F78A 1U10A 4MUQA 4MUSA 2J3RB 1SZ7A 2WFQA 4C4MA 2VO9A 3M1NA 4OX5A 1R44A 2WG4A 3N1RA 4MPHA 4OAKA 2OSDA 3N1QA 2J3WB 2CFHA
chains in the Genus database with same CATH topology
1TZPA 4D0YA 3HO5H 3N1GA 4MUTA 3N1PB 3K7JB 3D1MA 2WFXA 1VHHA 4OXDA 1LBUA 3MXWA 2WFRA 3N1MB 4OX3A 2IBGE 4MURA 2WG3A 4JIDA 5HNMA 4NT9A 3N1FA 3K7IB 3K7GB 3K7HB 4C4NA 3N1OA 4F78A 1U10A 4MUSA 2WFQA 4C4MA 2VO9A 3M1NA 4OX5A 1R44A 2WG4A 3N1RA 4MPHA 4OAKA 3N1QA 4MUQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TZP A;  4D0Y A;  3HO5 H;  3N1G A;  4MUT A;  3N1P B;  3K7J B;  3D1M A;  2WFX A;  1VHH A;  4OXD A;  1LBU A;  3MXW A;  2WFR A;  3N1M B;  4OX3 A;  2IBG E;  4MUR A;  2WG3 A;  4JID A;  5HNM A;  4NT9 A;  3N1F A;  3K7I B;  3K7G B;  3K7H B;  4C4N A;  3N1O A;  4F78 A;  1U10 A;  4MUS A;  2WFQ A;  4C4M A;  2VO9 A;  3M1N A;  4OX5 A;  1R44 A;  2WG4 A;  3N1R A;  4MPH A;  4OAK A;  3N1Q A;  4MUQ A; 
#chains in the Genus database with same CATH topology
 1TZP A;  2J3W D;  3HO5 H;  3N1G A;  4MUT A;  4D0Y A;  3N1P B;  2CFH C;  2PWN A;  2J3T B;  3D1M A;  2WFX A;  3K7J B;  1VHH A;  4OXD A;  1LBU A;  3MXW A;  2WFR A;  3N1M B;  3NJC A;  2C0J A;  3KXC A;  4OX3 A;  2IBG E;  2BJN A;  4MUR A;  1WC8 A;  2WG3 A;  3CUE B;  4JID A;  4NT9 A;  2J3R A;  5HNM A;  3CUE D;  3KXC C;  3N1F A;  2OSO A;  3K7I B;  2C0J B;  2J3T A;  1WC9 A;  3K7G B;  3K7H B;  4C4N A;  3N1O A;  4F78 A;  1U10 A;  4MUQ A;  4MUS A;  2J3R B;  1SZ7 A;  2WFQ A;  4C4M A;  2VO9 A;  3M1N A;  4OX5 A;  1R44 A;  2WG4 A;  3N1R A;  4MPH A;  4OAK A;  2OSD A;  3N1Q A;  2J3W B;  2CFH A; 
#chains in the Genus database with same CATH homology
 1TZP A;  4D0Y A;  3HO5 H;  3N1G A;  4MUT A;  3N1P B;  3K7J B;  3D1M A;  2WFX A;  1VHH A;  4OXD A;  1LBU A;  3MXW A;  2WFR A;  3N1M B;  4OX3 A;  2IBG E;  4MUR A;  2WG3 A;  4JID A;  5HNM A;  4NT9 A;  3N1F A;  3K7I B;  3K7G B;  3K7H B;  4C4N A;  3N1O A;  4F78 A;  1U10 A;  4MUS A;  2WFQ A;  4C4M A;  2VO9 A;  3M1N A;  4OX5 A;  1R44 A;  2WG4 A;  3N1R A;  4MPH A;  4OAK A;  3N1Q A;  4MUQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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