3N3UA

Crystal structure of ibpafic2
Total Genus 108
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
108
sequence length
296
structure length
291
Chain Sequence
VNYQDLEDNLNLKGLISLEDDRNANFESNVLKNEKFLDEAREISKKSIPEATVKQMSHLPEFDDILTEGAKKVESRINKAITFRPSVEEFSEIQDLVKTLPKTKVIEDLSTKTNEITEALAATSKTIQRTPELKEQLKTAIEDFLQNSQGKPLTVQMIENLNHGLRPDEGEGRLLYKKENAVFSSPEAAKIQLAETVDFINRAKNEGIEPSVVGALVYQRLIAYHPFAEGNGRMARVIVNKILLDAGYPAFTKFSDEFEPQIIPQTKASTKSATSSEVVVEFLKELAKKGS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural basis of Fic-mediated adenylylation.
pubmed doi rcsb
source organism Histophilus somni
molecule tags Transferase
molecule keywords Adenosine monophosphate-protein transferase ibpA
total genus 108
structure length 291
sequence length 296
ec nomenclature ec 2.7.7.n1: Protein adenylyltransferase.
pdb deposition date 2010-05-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02661 Fic Fic/DOC family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3290.10 Mainly Alpha Orthogonal Bundle Fic-like fold Fido-like domain 3n3uA00
4X2EA 5JFFA 4U0ZA 3LETA 5JJ6A 3SHGA 4LU4A 2F6SA 3ZCBA 5JJ7A 4WGJA 2JK8A 2VY3A 4ITRA 3CUCA 4U0UA 4U0SA 4XI8A 4PY3A 2G03A 4NPSA 5EU0A 5JFZA 4N67A 5CGLA 4U04A 3ZC7A 4X2CA 3S6AA 4X2DA 3N3UA 4M16A 3SN9A 3ZLMA 3SE5A 5CMTA 5CKLA 2VZAA 4U07A
chains in the Genus database with same CATH superfamily
4X2EA 5JFFA 4U0ZA 3LETA 5JJ6A 3SHGA 4LU4A 2F6SA 3ZCBA 5JJ7A 4WGJA 2JK8A 2VY3A 2NUNA 4ITRA 3CUCA 4U0UA 4U0SA 4XI8A 4PY3A 1NH1A 2G03A 4NPSA 5EU0A 5JFZA 4N67A 5CGLA 4U04A 3ZC7A 4X2CA 3S6AA 4X2DA 3N3UA 4M16A 3SN9A 3ZLMA 3SE5A 5CMTA 5CKLA 2VZAA 2NUDA 4U07A
chains in the Genus database with same CATH topology
4X2EA 5JFFA 4U0ZA 3LETA 5JJ6A 3SHGA 4LU4A 2F6SA 3ZCBA 5JJ7A 4WGJA 2JK8A 2VY3A 4ITRA 3CUCA 4U0UA 4U0SA 4XI8A 4PY3A 2G03A 4NPSA 5EU0A 5JFZA 4N67A 5CGLA 4U04A 3ZC7A 4X2CA 3S6AA 4X2DA 3N3UA 4M16A 3SN9A 3ZLMA 3SE5A 5CMTA 5CKLA 2VZAA 4U07A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4X2E A;  5JFF A;  4U0Z A;  3LET A;  5JJ6 A;  3SHG A;  4LU4 A;  2F6S A;  3ZCB A;  5JJ7 A;  4WGJ A;  2JK8 A;  2VY3 A;  4ITR A;  3CUC A;  4U0U A;  4U0S A;  4XI8 A;  4PY3 A;  2G03 A;  4NPS A;  5EU0 A;  5JFZ A;  4N67 A;  5CGL A;  4U04 A;  3ZC7 A;  4X2C A;  3S6A A;  4X2D A;  3N3U A;  4M16 A;  3SN9 A;  3ZLM A;  3SE5 A;  5CMT A;  5CKL A;  2VZA A;  4U07 A; 
#chains in the Genus database with same CATH topology
 4X2E A;  5JFF A;  4U0Z A;  3LET A;  5JJ6 A;  3SHG A;  4LU4 A;  2F6S A;  3ZCB A;  5JJ7 A;  4WGJ A;  2JK8 A;  2VY3 A;  2NUN A;  4ITR A;  3CUC A;  4U0U A;  4U0S A;  4XI8 A;  4PY3 A;  1NH1 A;  2G03 A;  4NPS A;  5EU0 A;  5JFZ A;  4N67 A;  5CGL A;  4U04 A;  3ZC7 A;  4X2C A;  3S6A A;  4X2D A;  3N3U A;  4M16 A;  3SN9 A;  3ZLM A;  3SE5 A;  5CMT A;  5CKL A;  2VZA A;  2NUD A;  4U07 A; 
#chains in the Genus database with same CATH homology
 4X2E A;  5JFF A;  4U0Z A;  3LET A;  5JJ6 A;  3SHG A;  4LU4 A;  2F6S A;  3ZCB A;  5JJ7 A;  4WGJ A;  2JK8 A;  2VY3 A;  4ITR A;  3CUC A;  4U0U A;  4U0S A;  4XI8 A;  4PY3 A;  2G03 A;  4NPS A;  5EU0 A;  5JFZ A;  4N67 A;  5CGL A;  4U04 A;  3ZC7 A;  4X2C A;  3S6A A;  4X2D A;  3N3U A;  4M16 A;  3SN9 A;  3ZLM A;  3SE5 A;  5CMT A;  5CKL A;  2VZA A;  4U07 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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