3N4IB

Crystal structure of the shv-1 d104e beta-lactamase/beta-lactamase inhibitor protein (blip) complex
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
165
structure length
165
Chain Sequence
b'AGVMTGAKFTQIQFGMTRQQVLDIAGAENCETGGSFGDSIHCRGHAAGDYYAYATFGFTSAAADAKVDSKSQEKLLAPSAPTLTLAKFNQVTVGMTRAQVLATVGQGSCTTWSEYYPAYPSTAGVTLSLSCFDVDGYSSTGFYRGSAHLWFTDGVLQGKRQWDLV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Beta-lactamase SHV-1
publication title Specificity and Cooperativity at beta-lactamase Position 104 in TEM-1/BLIP and SHV-1/BLIP interactions
pubmed doi rcsb
source organism Klebsiella pneumoniae
molecule tags Hydrolase/hydrolase inhibitor
total genus 46
structure length 165
sequence length 165
ec nomenclature
pdb deposition date 2010-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF07467 BLIP Beta-lactamase inhibitor (BLIP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1450.10 Alpha Beta 2-Layer Sandwich Beta-lactamase Inhibitory Protein; Chain:B, domain 1 Beta-lactamase Inhibitory Protein; Chain:B, domain 1 3n4iB01
3.30.1450.10 Alpha Beta 2-Layer Sandwich Beta-lactamase Inhibitory Protein; Chain:B, domain 1 Beta-lactamase Inhibitory Protein; Chain:B, domain 1 3n4iB02
3D4EA 2PXGA 3N4IB 2G2UB 2G2WB 5EKQE 5AYWE 3C7UB 3C4OB 5D0QE 3GMUB 2KXXA 3C7VB 1S0WC 2KM7A 5D0OE 3E2KC 2B5RC 3C4PB 1XXMC 4DM5A 3E2LC 1JTGB 2YH9A
chains in the Genus database with same CATH superfamily
3D4EA 3NW8A 2PXGA 3NWAA 3N4IB 2G2UB 2GUMA 2G2WB 5EKQE 3NWFA 5AYWE 3FVCA 3C7UB 3C4OB 5D0QE 4L1RA 3GMUB 2KXXA 3C7VB 1S0WC 2KM7A 5D0OE 3E2KC 4HSIA 3NWDA 2B5RC 3C4PB 1XXMC 4DM5A 3E2LC 1JTGB 2YH9A
chains in the Genus database with same CATH topology
3D4EA 3NW8A 2PXGA 3NWAA 3N4IB 2G2UB 2GUMA 2G2WB 5EKQE 3NWFA 5AYWE 3FVCA 3C7UB 3C4OB 5D0QE 4L1RA 3GMUB 2KXXA 3C7VB 1S0WC 2KM7A 5D0OE 3E2KC 4HSIA 3NWDA 2B5RC 3C4PB 1XXMC 4DM5A 3E2LC 1JTGB 2YH9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D4E A;  2PXG A;  3N4I B;  2G2U B;  2G2W B;  5EKQ E;  5AYW E;  3C7U B;  3C4O B;  5D0Q E;  3GMU B;  2KXX A;  3C7V B;  1S0W C;  2KM7 A;  5D0O E;  3E2K C;  2B5R C;  3C4P B;  1XXM C;  4DM5 A;  3E2L C;  1JTG B;  2YH9 A; 
#chains in the Genus database with same CATH topology
 3D4E A;  3NW8 A;  2PXG A;  3NWA A;  3N4I B;  2G2U B;  2GUM A;  2G2W B;  5EKQ E;  3NWF A;  5AYW E;  3FVC A;  3C7U B;  3C4O B;  5D0Q E;  4L1R A;  3GMU B;  2KXX A;  3C7V B;  1S0W C;  2KM7 A;  5D0O E;  3E2K C;  4HSI A;  3NWD A;  2B5R C;  3C4P B;  1XXM C;  4DM5 A;  3E2L C;  1JTG B;  2YH9 A; 
#chains in the Genus database with same CATH homology
 3D4E A;  3NW8 A;  2PXG A;  3NWA A;  3N4I B;  2G2U B;  2GUM A;  2G2W B;  5EKQ E;  3NWF A;  5AYW E;  3FVC A;  3C7U B;  3C4O B;  5D0Q E;  4L1R A;  3GMU B;  2KXX A;  3C7V B;  1S0W C;  2KM7 A;  5D0O E;  3E2K C;  4HSI A;  3NWD A;  2B5R C;  3C4P B;  1XXM C;  4DM5 A;  3E2L C;  1JTG B;  2YH9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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