3N5IA

Crystal structure of the precursor (s250a mutant) of the n-terminal beta-aminopeptidase bapa
Total Genus 114
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
114
sequence length
371
structure length
360
Chain Sequence
GPRARDLGVPFEGTPGALNAITDVAGVEVGHTTVISGDGAMVIGKGPYRTGVTIIHPLGKTSLDGVAAGRAVINGTGEWTGMHLVDEVGQFLGPIALTGTGNVGLVHQSMMDWSVGKVPEEALFSRLLPVVAETLDNRLNDVFGHGLTRDHVFAALDGAKGGPVAEGNVGGGTGMIAYTFKGGIGTSSRVVSAGDTRYTVGVLVQANHGDRNDLRIAGVQIGKEIKGAWPEVNGIVKNALLIVIATDAPLMPHQLERMARRAALGVGRNGSTAGALSGEFALAFSTSHVIPLGGKPRLPAIINDTDSETMNALFRGVVQATEEALVNQLVASETMTGANNAKVYGIPHDQLARIMKARFP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Beta-peptidyl aminopeptidase
publication title Autoproteolytic and catalytic mechanisms for the beta-aminopeptidase BapA--a member of the Ntn hydrolase family.
pubmed doi rcsb
source organism Sphingosinicella xenopeptidilytica
total genus 114
structure length 360
sequence length 371
chains with identical sequence B, C, D
ec nomenclature ec 3.4.11.25: Beta-peptidyl aminopeptidase.
pdb deposition date 2010-05-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03576 Peptidase_S58 Peptidase family S58
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.70.12 Alpha Beta 4-Layer Sandwich L-amino peptidase D-ALA esterase/amidase L-amino peptidase D-ALA esterase/amidase 3n5iA00
3S3UA 1VZ6A 3IT4A 3N5IA 3NDVA 3IT6A 4IHDA 2VZKA 3N33A 3AXGA 3TM1A 1VRAA 2YEPA 2DRHA 3TM2A 1VZ7A 1VZ8A 1B65A 4IHEA 3N2WA 2V4IA 3NFBA
chains in the Genus database with same CATH superfamily
3S3UA 1VZ6A 3IT4A 3N5IA 3NDVA 3IT6A 4IHDA 2VZKA 3N33A 3AXGA 3TM1A 1VRAA 2YEPA 2DRHA 3TM2A 1VZ7A 1VZ8A 1B65A 4IHEA 3N2WA 2V4IA 3NFBA
chains in the Genus database with same CATH topology
3S3UA 1VZ6A 3IT4A 3N5IA 3NDVA 3IT6A 4IHDA 2VZKA 3N33A 3AXGA 3TM1A 1VRAA 2YEPA 2DRHA 3TM2A 1VZ7A 1VZ8A 1B65A 4IHEA 3N2WA 2V4IA 3NFBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3S3U A;  1VZ6 A;  3IT4 A;  3N5I A;  3NDV A;  3IT6 A;  4IHD A;  2VZK A;  3N33 A;  3AXG A;  3TM1 A;  1VRA A;  2YEP A;  2DRH A;  3TM2 A;  1VZ7 A;  1VZ8 A;  1B65 A;  4IHE A;  3N2W A;  2V4I A;  3NFB A; 
#chains in the Genus database with same CATH topology
 3S3U A;  1VZ6 A;  3IT4 A;  3N5I A;  3NDV A;  3IT6 A;  4IHD A;  2VZK A;  3N33 A;  3AXG A;  3TM1 A;  1VRA A;  2YEP A;  2DRH A;  3TM2 A;  1VZ7 A;  1VZ8 A;  1B65 A;  4IHE A;  3N2W A;  2V4I A;  3NFB A; 
#chains in the Genus database with same CATH homology
 3S3U A;  1VZ6 A;  3IT4 A;  3N5I A;  3NDV A;  3IT6 A;  4IHD A;  2VZK A;  3N33 A;  3AXG A;  3TM1 A;  1VRA A;  2YEP A;  2DRH A;  3TM2 A;  1VZ7 A;  1VZ8 A;  1B65 A;  4IHE A;  3N2W A;  2V4I A;  3NFB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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