3N6WA

Crystal structure of human gamma-butyrobetaine hydroxylase
Total Genus 109
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
109
sequence length
386
structure length
360
Chain Sequence
SMACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEALDVNIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGSELQLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYGHTWQVQDKLSFHTDYPALHHPPGVQLLHCIKQDSEIVDGFNVCQKLKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDTIFDVPVERVQPFYAALKEFVDLMNSKESKFTFKMNPGDVITFDNWRLLHGRRRHLEGAYADWDVVMSRLRILRQRVEN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Gamma-butyrobetaine dioxygenase
publication title Crystal structure of human gamma-butyrobetaine hydroxylase.
pubmed doi rcsb
source organism Homo sapiens
total genus 109
structure length 360
sequence length 386
ec nomenclature ec 1.14.11.1: Gamma-butyrobetaine dioxygenase.
pdb deposition date 2010-05-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02668 TauD Taurine catabolism dioxygenase TauD, TfdA family
A PF06155 DUF971 Protein of unknown function (DUF971)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2020.30 Alpha Beta 2-Layer Sandwich NE0471 N-terminal domain-like NE0471 N-terminal domain-like 3n6wA01
3.60.130.10 Alpha Beta 4-Layer Sandwich Double-stranded beta-helix Clavaminate synthase-like 3n6wA02
3SWTA 4BHFA 3N6WA 1OTJA 5HSXA 1OIJA 1GQWA 1NX8A 1OS7A 4M2EA 1Y0ZA 1DRTA 2WBOA 3PVJA 2WBQA 4BHIA 5KEUA 1DS1A 1OIJB 3MS5A 3V15A 2R6SA 5J92A 1OIIA 4M27A 4CWDA 1VZ4A 1DS0A 4C5WA 2OG7A 1GY9A 4C8RA 4OJ8A 4M23A 4M2GA 4BGKA 4CVYA 2OG6A 4Y0EA 1NX4A 3EATX 3O2GA 2WBPA 4J5IA 1OIKA 4NE0A 4BGMA 4BG1A 1GVGA 1OIJC 3LUUA 4M25A 1OIHA 3R1JA 1JR7A 4M2IA 4M2FA 2Q4AA 4M2CA 1DRYA 1VZ5A 3V17A 4YLMX 4BHGA 4FFAA 4M26A 2OG5A
chains in the Genus database with same CATH superfamily
3SWTA 4BHFA 1PG6A 3N6WA 1OTJA 5HSXA 1OIJA 1GQWA 1NX8A 1OS7A 4M2EA 1Y0ZA 1DRTA 2WBOA 3PVJA 2WBQA 4BHIA 5KEUA 1DS1A 1OIJB 3MS5A 3V15A 2R6SA 1YOXA 5J92A 1OIIA 4M27A 3K8RA 4CWDA 1VZ4A 1DS0A 4C5WA 2OG7A 1GY9A 4C8RA 4OJ8A 2AUWA 4M23A 4BGKA 4M2GA 2OG6A 4Y0EA 4CVYA 1NX4A 3EATX 3O2GA 2WBPA 4J5IA 1OIKA 4NE0A 4BGMA 4BG1A 1GVGA 1OIJC 3LUUA 4M25A 1OIHA 3R1JA 3V17A 1JR7A 4M2IA 2X8NA 2Q4AA 4M2FA 1DRYA 1VZ5A 4M2CA 4YLMX 4BHGA 4FFAA 4M26A 2OG5A
chains in the Genus database with same CATH topology
3SWTA 1YCIA 2YC0A 2WBQA 2YDEA 4BHIA 5KEUA 3V15A 5JWPA 4JAAA 3K8RA 1H2KA 4M2GA 3O2GA 3LUUA 1JR7A 1H2NA 4M2IA 2Q4AA 3V17A 2WA4A 2OG5A 4NR1A 1GQWA 1OS7A 2ILMA 4M2EA 1MZFA 1OIJB 1OIIA 4M27A 1VZ4A 2OG7A 4OJ8A 4M23A 4BGKA 2OG6A 4Y0EA 4Z2WA 2XUMA 2WBPA 4NE0A 1GVGA 1OIJC 3R1JA 1VZ5A 3N6WA 2WA3A 1IZ3A 1NX8A 4Z1VA 4BIOA 3D8CA 1DRTA 2WBOA 1DS1A 4AI8A 5J92A 3OD4A 1DS0A 1GY9A 4C8RA 3P3NA 1H2MA 1NX4A 3KCYA 1OIKA 1MZEA 2CGNA 2X8NA 4YLMX 4FFAA 4B7KA 4BHFA 1OTJA 3KCXA 5HSXA 1OIJA 1Y0ZA 3PVJA 3MS5A 2R6SA 4CWDA 2CGOA 4C5WA 2Y0IA 4CVYA 3P3PA 3EATX 4J5IA 4BGMA 4BG1A 1OIHA 4B7EA 2W0XA 4M2FA 4M2CA 1DRYA 1H2LA 4BHGA 4M25A 4M26A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SWT A;  4BHF A;  3N6W A;  1OTJ A;  5HSX A;  1OIJ A;  1GQW A;  1NX8 A;  1OS7 A;  4M2E A;  1Y0Z A;  1DRT A;  2WBO A;  3PVJ A;  2WBQ A;  4BHI A;  5KEU A;  1DS1 A;  1OIJ B;  3MS5 A;  3V15 A;  2R6S A;  5J92 A;  1OII A;  4M27 A;  4CWD A;  1VZ4 A;  1DS0 A;  4C5W A;  2OG7 A;  1GY9 A;  4C8R A;  4OJ8 A;  4M23 A;  4M2G A;  4BGK A;  4CVY A;  2OG6 A;  4Y0E A;  1NX4 A;  3EAT X;  3O2G A;  2WBP A;  4J5I A;  1OIK A;  4NE0 A;  4BGM A;  4BG1 A;  1GVG A;  1OIJ C;  3LUU A;  4M25 A;  1OIH A;  3R1J A;  1JR7 A;  4M2I A;  4M2F A;  2Q4A A;  4M2C A;  1DRY A;  1VZ5 A;  3V17 A;  4YLM X;  4BHG A;  4FFA A;  4M26 A;  2OG5 A; 
#chains in the Genus database with same CATH topology
 3SWT A;  4BHF A;  1PG6 A;  3N6W A;  1OTJ A;  5HSX A;  1OIJ A;  1GQW A;  1NX8 A;  1OS7 A;  4M2E A;  1Y0Z A;  1DRT A;  2WBO A;  3PVJ A;  2WBQ A;  4BHI A;  5KEU A;  1DS1 A;  1OIJ B;  3MS5 A;  3V15 A;  2R6S A;  1YOX A;  5J92 A;  1OII A;  4M27 A;  3K8R A;  4CWD A;  1VZ4 A;  1DS0 A;  4C5W A;  2OG7 A;  1GY9 A;  4C8R A;  4OJ8 A;  2AUW A;  4M23 A;  4BGK A;  4M2G A;  2OG6 A;  4Y0E A;  4CVY A;  1NX4 A;  3EAT X;  3O2G A;  2WBP A;  4J5I A;  1OIK A;  4NE0 A;  4BGM A;  4BG1 A;  1GVG A;  1OIJ C;  3LUU A;  4M25 A;  1OIH A;  3R1J A;  3V17 A;  1JR7 A;  4M2I A;  2X8N A;  2Q4A A;  4M2F A;  1DRY A;  1VZ5 A;  4M2C A;  4YLM X;  4BHG A;  4FFA A;  4M26 A;  2OG5 A; 
#chains in the Genus database with same CATH homology
 3SWT A;  1YCI A;  2YC0 A;  2WBQ A;  2YDE A;  4BHI A;  5KEU A;  3V15 A;  5JWP A;  4JAA A;  3K8R A;  1H2K A;  4M2G A;  3O2G A;  3LUU A;  1JR7 A;  1H2N A;  4M2I A;  2Q4A A;  3V17 A;  2WA4 A;  2OG5 A;  4NR1 A;  1GQW A;  1OS7 A;  2ILM A;  4M2E A;  1MZF A;  1OIJ B;  1OII A;  4M27 A;  1VZ4 A;  2OG7 A;  4OJ8 A;  4M23 A;  4BGK A;  2OG6 A;  4Y0E A;  4Z2W A;  2XUM A;  2WBP A;  4NE0 A;  1GVG A;  1OIJ C;  3R1J A;  1VZ5 A;  3N6W A;  2WA3 A;  1IZ3 A;  1NX8 A;  4Z1V A;  4BIO A;  3D8C A;  1DRT A;  2WBO A;  1DS1 A;  4AI8 A;  5J92 A;  3OD4 A;  1DS0 A;  1GY9 A;  4C8R A;  3P3N A;  1H2M A;  1NX4 A;  3KCY A;  1OIK A;  1MZE A;  2CGN A;  2X8N A;  4YLM X;  4FFA A;  4B7K A;  4BHF A;  1OTJ A;  3KCX A;  5HSX A;  1OIJ A;  1Y0Z A;  3PVJ A;  3MS5 A;  2R6S A;  4CWD A;  2CGO A;  4C5W A;  2Y0I A;  4CVY A;  3P3P A;  3EAT X;  4J5I A;  4BGM A;  4BG1 A;  1OIH A;  4B7E A;  2W0X A;  4M2F A;  4M2C A;  1DRY A;  1H2L A;  4BHG A;  4M25 A;  4M26 A; 
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