3N92A

Crystal structure of tk1436, a gh57 branching enzyme from hyperthermophilic archaeon thermococcus kodakaraensis, in complex with glucose
Total Genus 213
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
213
sequence length
550
structure length
550
Chain Sequence
MKGYLTFVLHTHIPYVRKHGKWPFGEEWVFEAISETYIPLLMEFERLRDSGVKFGIVINVTPVLAEQLTDEYMKKAFEEYMERKLKAMEEDLKSGKYDEKAVSYMLNYFRKVYDYWKAINGDIIGKLRELQDQGYVEVITSAATHGYLPLLGRDEAIRAQIANGVATYEKHFGMKPKGIWLPECAYRPAGEWELPGGRKVKRQGIEKFLEEFGLRYFFVESRLIDEGPASNVYGEVLIADTEKTTLRPYWIKGSNVAVFARNRETGHQVWSAHYGYPGDFWYREFHKKAPKSGGQYWRITSKEVGLGEKEFYDPDKAMERVEEHARHFVSLVERLLREHEEKFGEKGIIVAPYDTELFGHWWFEGVKWLGRVLELLYQRGVETPTLSRFLEEYSGEKHEIELPEGSWGANSDHSTWWNEETEWTWPHIYRAEDRMVAIVSRFRGRDELTNRVIEQLARELLILEASDWQFLITTGQAKEYAKRRVLIHSRDFHRLANELVRYVKIGEFDVKLLEELEERDNPFRPVVVGPYVSENPPELEEYVEPPEVPP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords alpha-amylase, GH57 family
publication title Structural basis for branching-enzyme activity of glycoside hydrolase family 57: Structure and stability studies of a novel branching enzyme from the hyperthermophilic archaeon Thermococcus Kodakaraensis KOD1.
pubmed doi rcsb
source organism Thermococcus kodakarensis
total genus 213
structure length 550
sequence length 550
ec nomenclature ec 2.4.1.18: 1,4-alpha-glucan branching enzyme.
pdb deposition date 2010-05-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03065 Glyco_hydro_57 Glycosyl hydrolase family 57
A PF09210 DUF1957 Domain of unknown function (DUF1957)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1430.10 Mainly Alpha Up-down Bundle immunoglobulin/albumin-binding domain-like Families 57/38 glycoside transferase, middle domain 3n92A02
3.20.110.10 Alpha Beta Alpha-Beta Barrel 7-stranded beta/alpha barrel Glycoside hydrolase 38, N terminal domain 3n92A01
2F1AA 1HTYA 3N92A 3BVWA 3BUDA 1TQTA 3DX0A 3EJTA 1TQSA 3BLBA 3P0BA 2F1BA 2B5DX 3BVVA 3EJSA 1O7DA 1QWNA 2F7RA 2F7QA 3EJPA 2F18A 3DX2A 2FYVA 3N8TA 3EJRA 3D52A 1HWWA 3BUIA 1TQWA 2F7PA 3N98A 3DDGA 3D4YA 1R33A 2OW7A 1R34A 3BVUA 5KBPA 3CZSA 1TQVA 3BVXA 3CV5A 3D4ZA 3BUPA 3BVTA 3DX3A 1TQUA 3LVTA 3BUBA 2OW6A 3D50A 1HXKA 1UFAA 2ALWA 3EJUA 3EJQA 3BUQA 2F7OA 3DX4A 1PS3A 3D51A 3DDFA 1QWUA 3DX1A 3CZNA 1QX1A
chains in the Genus database with same CATH superfamily
2F1AA 3N92A 2ZT5A 4KQEA 3BVWA 3BUDA 2ZXFA 3P0BA 1O7DA 2F7RA 2F7QA 2F7PA 3D4YA 2OW7A 5KBPA 3DX3A 2OW6A 3D50A 2ALWA 2ZT6A 2F1BA 3BVVA 1K1YA 2FYVA 3EJRA 1TQWA 2ZT8A 3DDGA 1R34A 3CZSA 3D4ZA 3LVTA 2Q5HA 3BUBA 3EJUA 1K1XA 2F7OA 1PS3A 1K1WA 3DX1A 3DX0A 1TQTA 3EJTA 1TQSA 3BLBA 2B5DX 3EJSA 3EJPA 3N8TA 1HWWA 3BUIA 3BVUA 3BVTA 1TQUA 1UFAA 3EJQA 2PMEA 3DDFA 2PMFA 2ZT7A 1HTYA 1QWNA 2Q5IA 2F18A 3DX2A 3D52A 3N98A 1R33A 1TQVA 3BVXA 3CV5A 3BUPA 1HXKA 3BUQA 3DX4A 3D51A 1QWUA 3CZNA 1QX1A
chains in the Genus database with same CATH topology
2F1AA 1HTYA 3N92A 3BVWA 3BUDA 1TQTA 3DX0A 3EJTA 1TQSA 3BLBA 3P0BA 2F1BA 2B5DX 3BVVA 3EJSA 1O7DA 1QWNA 2F7RA 2F7QA 3EJPA 2F18A 3DX2A 2FYVA 3N8TA 3EJRA 3D52A 1HWWA 3BUIA 1TQWA 2F7PA 3N98A 3DDGA 3D4YA 1R33A 2OW7A 1R34A 3BVUA 5KBPA 3CZSA 1TQVA 3BVXA 3CV5A 3D4ZA 3BUPA 3BVTA 3DX3A 1TQUA 3LVTA 3BUBA 2OW6A 3D50A 1HXKA 1UFAA 2ALWA 3EJUA 3EJQA 3BUQA 2F7OA 3DX4A 1PS3A 3D51A 3DDFA 1QWUA 3DX1A 3CZNA 1QX1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2F1A A;  1HTY A;  3N92 A;  3BVW A;  3BUD A;  1TQT A;  3DX0 A;  3EJT A;  1TQS A;  3BLB A;  3P0B A;  2F1B A;  2B5D X;  3BVV A;  3EJS A;  1O7D A;  1QWN A;  2F7R A;  2F7Q A;  3EJP A;  2F18 A;  3DX2 A;  2FYV A;  3N8T A;  3EJR A;  3D52 A;  1HWW A;  3BUI A;  1TQW A;  2F7P A;  3N98 A;  3DDG A;  3D4Y A;  1R33 A;  2OW7 A;  1R34 A;  3BVU A;  5KBP A;  3CZS A;  1TQV A;  3BVX A;  3CV5 A;  3D4Z A;  3BUP A;  3BVT A;  3DX3 A;  1TQU A;  3LVT A;  3BUB A;  2OW6 A;  3D50 A;  1HXK A;  1UFA A;  2ALW A;  3EJU A;  3EJQ A;  3BUQ A;  2F7O A;  3DX4 A;  1PS3 A;  3D51 A;  3DDF A;  1QWU A;  3DX1 A;  3CZN A;  1QX1 A; 
#chains in the Genus database with same CATH topology
 2F1A A;  3N92 A;  2ZT5 A;  4KQE A;  3BVW A;  3BUD A;  2ZXF A;  3P0B A;  1O7D A;  2F7R A;  2F7Q A;  2F7P A;  3D4Y A;  2OW7 A;  5KBP A;  3DX3 A;  2OW6 A;  3D50 A;  2ALW A;  2ZT6 A;  2F1B A;  3BVV A;  1K1Y A;  2FYV A;  3EJR A;  1TQW A;  2ZT8 A;  3DDG A;  1R34 A;  3CZS A;  3D4Z A;  3LVT A;  2Q5H A;  3BUB A;  3EJU A;  1K1X A;  2F7O A;  1PS3 A;  1K1W A;  3DX1 A;  3DX0 A;  1TQT A;  3EJT A;  1TQS A;  3BLB A;  2B5D X;  3EJS A;  3EJP A;  3N8T A;  1HWW A;  3BUI A;  3BVU A;  3BVT A;  1TQU A;  1UFA A;  3EJQ A;  2PME A;  3DDF A;  2PMF A;  2ZT7 A;  1HTY A;  1QWN A;  2Q5I A;  2F18 A;  3DX2 A;  3D52 A;  3N98 A;  1R33 A;  1TQV A;  3BVX A;  3CV5 A;  3BUP A;  1HXK A;  3BUQ A;  3DX4 A;  3D51 A;  1QWU A;  3CZN A;  1QX1 A; 
#chains in the Genus database with same CATH homology
 2F1A A;  1HTY A;  3N92 A;  3BVW A;  3BUD A;  1TQT A;  3DX0 A;  3EJT A;  1TQS A;  3BLB A;  3P0B A;  2F1B A;  2B5D X;  3BVV A;  3EJS A;  1O7D A;  1QWN A;  2F7R A;  2F7Q A;  3EJP A;  2F18 A;  3DX2 A;  2FYV A;  3N8T A;  3EJR A;  3D52 A;  1HWW A;  3BUI A;  1TQW A;  2F7P A;  3N98 A;  3DDG A;  3D4Y A;  1R33 A;  2OW7 A;  1R34 A;  3BVU A;  5KBP A;  3CZS A;  1TQV A;  3BVX A;  3CV5 A;  3D4Z A;  3BUP A;  3BVT A;  3DX3 A;  1TQU A;  3LVT A;  3BUB A;  2OW6 A;  3D50 A;  1HXK A;  1UFA A;  2ALW A;  3EJU A;  3EJQ A;  3BUQ A;  2F7O A;  3DX4 A;  1PS3 A;  3D51 A;  3DDF A;  1QWU A;  3DX1 A;  3CZN A;  1QX1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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