3NEIA

Crystal structure of precorrin-4 c11-methyltransferase from rhodobacter capsulatus (no sah bound)
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
230
structure length
225
Chain Sequence
MTVHFIGAGPGAADLITIRGRDLIASCPVCLYAGSLVPEALLAHCPPGAKIVNTAPMSLDAIIDTIAEAHAAGQDVARLHSGDLSIWSAMGEQLRRLRALNIPYDVTPGVPSFAAAAATLGAELTLPGVAQSVILTRTAMPAGETLENFARTGAVLAIHLSVHVLDEVVQKLVPHYGEDCPVAIVWRASWPDQRVVRATLATLQTSLGAELERTALILVGRSLAT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of Precorrin-4 C11-methyltransferase from Rhodobacter capsulatus (no SAH bound)
rcsb
source organism Rhodobacter capsulatus
molecule tags Transferase
molecule keywords Precorrin-4 C(11)-methyltransferase
total genus 70
structure length 225
sequence length 230
chains with identical sequence B
ec nomenclature ec 2.1.1.133: Precorrin-4 C(11)-methyltransferase.
pdb deposition date 2010-06-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 3neiA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 3neiA01
1WNGA 2OWVA 3NEIA 2EL1A 2EJZA 2EJKA 2DSIA 2EL0A 1WYZA 2E4RA 2EK3A 2EK4A 2DV7A 2OWUA 2DXXA 3ND1A 2ENIA 3KWPA 2E8HA 2HUVA 2DV4A 2EH4A 1VHVA 2DV3A 2ELEA 3FFYA 2E0KA 2EH5A 2EGSA 2EHLA 3NDCA 2CBFA 2DXVA 2E08A 2EGLA 2EJJA 2E8RA 2P6KA 2EK7A 2DV5A 2EK2A 2HUTA 2NPNA 2E8SA 2EL3A 2PCAA 2E7RA 2HR8A 2P2XA 5HW4A 2EH2A 2E8QA 1CBFA 3NUTA 2E4NA 2E15A 2E0NA 2E17A 2HUXA 3HH1A 2HUQA 2DEKA 2DSHA 2EN5A 2EMUA 2EL2A 2DSGA 1V9AA 2ED5A 1VCEA 2QBUA 2P6IA 2PCKA 2OWKA 2YBQA 2ZVBA 2E07A 1PJQA 2EGBA 2PCMA 2DXWA 2PCGA 2PCIA 2ED3A 2E16A 2P6DA 1S4DA 2P5FA 1VA0A 2EKAA 2BB3A 2OWGA 2P5CA 3I4TA 2OWFA 2ZVCA 1VE2A 2EMRA 1PJSA 2ELDA 2PB4A 1PJTA 2P6LA 1WDEA 2PB5A 2EHCA 2EEQA 2P9DA 2PB6A 2YBOA 4E16A 2PCHA 3FQ6A 2Z6RA
chains in the Genus database with same CATH superfamily
1WNGA 2OWVA 3NEIA 2EL1A 4H4DA 2EJZA 4MUYA 2EJKA 4MUXA 2DSIA 2EL0A 1WYZA 4EB3A 3UV7A 2E4RA 2EK3A 2EK4A 2DV7A 2OWUA 3KEMA 3UTCA 2DXXA 3ND1A 2ENIA 3KWPA 2E8HA 2HUVA 3ZGNA 2DV4A 2EH4A 1VHVA 3KE9A 2DV3A 3DNFA 4N7BA 2ELEA 3FFYA 2E0KA 2EH5A 3UWMA 2EGSA 3UV6A 2EHLA 3TIXB 3NDCA 2CBFA 2DXVA 2E08A 2EGLA 2EJJA 2E8RA 2P6KA 2EK7A 2DV5A 2EK2A 2HUTA 2NPNA 2E8SA 2EL3A 2PCAA 2E7RA 2HR8A 2P2XA 5HW4A 2EH2A 2E8QA 1CBFA 3NUTA 3SZLA 2E4NA 3SZUA 3F7TA 2E15A 2E0NA 2E17A 2HUXA 3HH1A 2HUQA 2DEKA 2DSHA 2EN5A 2EMUA 2EL2A 2DSGA 1V9AA 2ED5A 3ZGLA 1VCEA 2QBUA 3KE8A 2P6IA 4H4CA 2PCKA 2KYYA 3T0GA 2OWKA 2YBQA 2ZVBA 2E07A 1PJQA 2EGBA 4MV5A 2PCMA 2DXWA 2PCGA 2PCIA 2ED3A 3LMMA 2E16A 3T0FA 1S4DA 2P5FA 1VA0A 2EKAA 2P6DA 3KELA 2BB3A 4H4EA 2OWGA 2P5CA 3I4TA 2OWFA 2ZVCA 1VE2A 2EMRA 3UTDA 1PJSA 3UV3A 2ELDA 4MV0A 2PB4A 1PJTA 2P6LA 1WDEA 2PB5A 2EHCA 2EEQA 2P9DA 2PB6A 3KEFA 3URKA 2YBOA 4E16A 2PCHA 3FQ6A 3SZOA 2Z6RA
chains in the Genus database with same CATH topology
1WNGA 2OWVA 3NEIA 2EL1A 4H4DA 2EJZA 4MUYA 2EJKA 4MUXA 2DSIA 2EL0A 1WYZA 4EB3A 3UV7A 2E4RA 2EK3A 2EK4A 2DV7A 2OWUA 3KEMA 3UTCA 2DXXA 3ND1A 2ENIA 3KWPA 2E8HA 2HUVA 3ZGNA 2DV4A 2EH4A 1VHVA 3KE9A 2DV3A 3DNFA 4N7BA 2ELEA 3FFYA 2E0KA 2EH5A 3UWMA 2EGSA 3UV6A 2EHLA 3TIXB 3NDCA 2CBFA 2DXVA 2E08A 2EGLA 2EJJA 2E8RA 2P6KA 2EK7A 2DV5A 2EK2A 2HUTA 2NPNA 2E8SA 2EL3A 2PCAA 2E7RA 2HR8A 2P2XA 5HW4A 2EH2A 2E8QA 1CBFA 3NUTA 3SZLA 2E4NA 3SZUA 3F7TA 2E15A 2E0NA 2E17A 2HUXA 3HH1A 2HUQA 2DEKA 2DSHA 2EN5A 2EMUA 2EL2A 2DSGA 1V9AA 2ED5A 3ZGLA 1VCEA 2QBUA 3KE8A 2P6IA 4H4CA 2PCKA 2KYYA 3T0GA 2OWKA 2YBQA 2ZVBA 2E07A 1PJQA 2EGBA 4MV5A 2PCMA 2DXWA 2PCGA 2PCIA 2ED3A 3LMMA 2E16A 3T0FA 1S4DA 2P5FA 1VA0A 2EKAA 2P6DA 3KELA 2BB3A 4H4EA 2OWGA 2P5CA 3I4TA 2OWFA 2ZVCA 1VE2A 2EMRA 3UTDA 1PJSA 3UV3A 2ELDA 4MV0A 2PB4A 1PJTA 2P6LA 1WDEA 2PB5A 2EHCA 2EEQA 2P9DA 2PB6A 3KEFA 3URKA 2YBOA 4E16A 2PCHA 3FQ6A 3SZOA 2Z6RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WNG A;  2OWV A;  3NEI A;  2EL1 A;  2EJZ A;  2EJK A;  2DSI A;  2EL0 A;  1WYZ A;  2E4R A;  2EK3 A;  2EK4 A;  2DV7 A;  2OWU A;  2DXX A;  3ND1 A;  2ENI A;  3KWP A;  2E8H A;  2HUV A;  2DV4 A;  2EH4 A;  1VHV A;  2DV3 A;  2ELE A;  3FFY A;  2E0K A;  2EH5 A;  2EGS A;  2EHL A;  3NDC A;  2CBF A;  2DXV A;  2E08 A;  2EGL A;  2EJJ A;  2E8R A;  2P6K A;  2EK7 A;  2DV5 A;  2EK2 A;  2HUT A;  2NPN A;  2E8S A;  2EL3 A;  2PCA A;  2E7R A;  2HR8 A;  2P2X A;  5HW4 A;  2EH2 A;  2E8Q A;  1CBF A;  3NUT A;  2E4N A;  2E15 A;  2E0N A;  2E17 A;  2HUX A;  3HH1 A;  2HUQ A;  2DEK A;  2DSH A;  2EN5 A;  2EMU A;  2EL2 A;  2DSG A;  1V9A A;  2ED5 A;  1VCE A;  2QBU A;  2P6I A;  2PCK A;  2OWK A;  2YBQ A;  2ZVB A;  2E07 A;  1PJQ A;  2EGB A;  2PCM A;  2DXW A;  2PCG A;  2PCI A;  2ED3 A;  2E16 A;  2P6D A;  1S4D A;  2P5F A;  1VA0 A;  2EKA A;  2BB3 A;  2OWG A;  2P5C A;  3I4T A;  2OWF A;  2ZVC A;  1VE2 A;  2EMR A;  1PJS A;  2ELD A;  2PB4 A;  1PJT A;  2P6L A;  1WDE A;  2PB5 A;  2EHC A;  2EEQ A;  2P9D A;  2PB6 A;  2YBO A;  4E16 A;  2PCH A;  3FQ6 A;  2Z6R A; 
#chains in the Genus database with same CATH topology
 1WNG A;  2OWV A;  3NEI A;  2EL1 A;  4H4D A;  2EJZ A;  4MUY A;  2EJK A;  4MUX A;  2DSI A;  2EL0 A;  1WYZ A;  4EB3 A;  3UV7 A;  2E4R A;  2EK3 A;  2EK4 A;  2DV7 A;  2OWU A;  3KEM A;  3UTC A;  2DXX A;  3ND1 A;  2ENI A;  3KWP A;  2E8H A;  2HUV A;  3ZGN A;  2DV4 A;  2EH4 A;  1VHV A;  3KE9 A;  2DV3 A;  3DNF A;  4N7B A;  2ELE A;  3FFY A;  2E0K A;  2EH5 A;  3UWM A;  2EGS A;  3UV6 A;  2EHL A;  3TIX B;  3NDC A;  2CBF A;  2DXV A;  2E08 A;  2EGL A;  2EJJ A;  2E8R A;  2P6K A;  2EK7 A;  2DV5 A;  2EK2 A;  2HUT A;  2NPN A;  2E8S A;  2EL3 A;  2PCA A;  2E7R A;  2HR8 A;  2P2X A;  5HW4 A;  2EH2 A;  2E8Q A;  1CBF A;  3NUT A;  3SZL A;  2E4N A;  3SZU A;  3F7T A;  2E15 A;  2E0N A;  2E17 A;  2HUX A;  3HH1 A;  2HUQ A;  2DEK A;  2DSH A;  2EN5 A;  2EMU A;  2EL2 A;  2DSG A;  1V9A A;  2ED5 A;  3ZGL A;  1VCE A;  2QBU A;  3KE8 A;  2P6I A;  4H4C A;  2PCK A;  2KYY A;  3T0G A;  2OWK A;  2YBQ A;  2ZVB A;  2E07 A;  1PJQ A;  2EGB A;  4MV5 A;  2PCM A;  2DXW A;  2PCG A;  2PCI A;  2ED3 A;  3LMM A;  2E16 A;  3T0F A;  1S4D A;  2P5F A;  1VA0 A;  2EKA A;  2P6D A;  3KEL A;  2BB3 A;  4H4E A;  2OWG A;  2P5C A;  3I4T A;  2OWF A;  2ZVC A;  1VE2 A;  2EMR A;  3UTD A;  1PJS A;  3UV3 A;  2ELD A;  4MV0 A;  2PB4 A;  1PJT A;  2P6L A;  1WDE A;  2PB5 A;  2EHC A;  2EEQ A;  2P9D A;  2PB6 A;  3KEF A;  3URK A;  2YBO A;  4E16 A;  2PCH A;  3FQ6 A;  3SZO A;  2Z6R A; 
#chains in the Genus database with same CATH homology
 1WNG A;  2OWV A;  3NEI A;  2EL1 A;  4H4D A;  2EJZ A;  4MUY A;  2EJK A;  4MUX A;  2DSI A;  2EL0 A;  1WYZ A;  4EB3 A;  3UV7 A;  2E4R A;  2EK3 A;  2EK4 A;  2DV7 A;  2OWU A;  3KEM A;  3UTC A;  2DXX A;  3ND1 A;  2ENI A;  3KWP A;  2E8H A;  2HUV A;  3ZGN A;  2DV4 A;  2EH4 A;  1VHV A;  3KE9 A;  2DV3 A;  3DNF A;  4N7B A;  2ELE A;  3FFY A;  2E0K A;  2EH5 A;  3UWM A;  2EGS A;  3UV6 A;  2EHL A;  3TIX B;  3NDC A;  2CBF A;  2DXV A;  2E08 A;  2EGL A;  2EJJ A;  2E8R A;  2P6K A;  2EK7 A;  2DV5 A;  2EK2 A;  2HUT A;  2NPN A;  2E8S A;  2EL3 A;  2PCA A;  2E7R A;  2HR8 A;  2P2X A;  5HW4 A;  2EH2 A;  2E8Q A;  1CBF A;  3NUT A;  3SZL A;  2E4N A;  3SZU A;  3F7T A;  2E15 A;  2E0N A;  2E17 A;  2HUX A;  3HH1 A;  2HUQ A;  2DEK A;  2DSH A;  2EN5 A;  2EMU A;  2EL2 A;  2DSG A;  1V9A A;  2ED5 A;  3ZGL A;  1VCE A;  2QBU A;  3KE8 A;  2P6I A;  4H4C A;  2PCK A;  2KYY A;  3T0G A;  2OWK A;  2YBQ A;  2ZVB A;  2E07 A;  1PJQ A;  2EGB A;  4MV5 A;  2PCM A;  2DXW A;  2PCG A;  2PCI A;  2ED3 A;  3LMM A;  2E16 A;  3T0F A;  1S4D A;  2P5F A;  1VA0 A;  2EKA A;  2P6D A;  3KEL A;  2BB3 A;  4H4E A;  2OWG A;  2P5C A;  3I4T A;  2OWF A;  2ZVC A;  1VE2 A;  2EMR A;  3UTD A;  1PJS A;  3UV3 A;  2ELD A;  4MV0 A;  2PB4 A;  1PJT A;  2P6L A;  1WDE A;  2PB5 A;  2EHC A;  2EEQ A;  2P9D A;  2PB6 A;  3KEF A;  3URK A;  2YBO A;  4E16 A;  2PCH A;  3FQ6 A;  3SZO A;  2Z6R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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