3NGQA

Crystal structure of the human cnot6l nuclease domain
Total Genus 106
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
106
sequence length
373
structure length
335
Chain Sequence
LPPRPWITLKERDLPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMANSDGSEAMLNRVMTKDNIGVAVVLEVHKELFKQLLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKSIPLVLCADLNSLPDSGVVEYLSNGGVADNHKDFKECLMNFSCEGRITHGFQLKSAYENNLMPYTNYTFDFKGVIDYIFYSKTHMNVEGVLGPLDPQWLVENNITGCPHPHIPSDHFSLLTQLELHPP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords CCR4-NOT transcription complex subunit 6-like
publication title Crystal structure of the human CNOT6L nuclease domain reveals strict poly(A) substrate specificity.
pubmed doi rcsb
source organism Homo sapiens
total genus 106
structure length 335
sequence length 373
ec nomenclature ec 3.1.13.4: Poly(A)-specific ribonuclease.
pdb deposition date 2010-06-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03372 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.10.10 Alpha Beta 4-Layer Sandwich Deoxyribonuclease I; Chain A Endonuclease/exonuclease/phosphatase 3ngqA00
5DG0A 1VYBA 1DEWA 1SI6X 3G0AA 3TEBA 3G00A 3NGQA 1DE9A 4GYZA 5INNA 3N9VA 4B5HA 5INMA 5J3ZA 5J3PA 3FZIA 2DDSA 2VOAA 5J3SA 5A7JA 4QHEA 5EWTA 4K6LF 5CFEA 5HT2A 4FPVA 3NGNA 2V0SA 3NR8A 3L1WA 3G0RA 3G2CA 3WCXA 5INOA 4B5GA 3NGOA 2DDTA 2D1KB 4QHDA 2J63A 5DFJA 2A41B 5A7IA 4LNDA 4F1HB 4B5IA 5INLA 3I48A 4AWNA 2A3ZB 3I5VA 4L21A 5INKA 3G3YA 4A9CA 4F1HA 3CJCD 1ATND 2O3HA 5DV2A 3G8VA 5INQA 4GZ1A 4F1RA 4GZ0A 4L1YA 5DFFA 2IMQX 1HD7A 4QH9A 2JC4A 2A42B 1AKOA 3G91A 4C1RA 5INPA 3MTCA 2ISIA 1ZWXA 5J8NA 4GEWA 4L1ZA 1BIXA 2F1NA 2JC5A 2DNJA 2A40B 2V0RA 3W2XA 3DNIA 1I9ZA 1I9YA 3G1KA 3U8UA 4JG3A 2EI9A 3K55A 2DDRA 3W3DB 5DV4A 5J42A 4GZ2A 4B5MA 3G2DA 3I41A 4PUQA 3MPRA 4RUWA 3G38A 1DNKA 3GA6A 5DFIA 1NTFA 2O3CA 4F1IA 1SR4B 4IEMA 4B5JA 1WDUA 4CMLA 4L20A 5DFHA 1YJHA 2UYRX 3W2YA 2XSWA 3I46A 4B5FA 3G3CA 1E9NA 1DE8A 4CMNA 2F2FB 3G6SA 3G4TA 4FVAA 5CFGA 1Y21A
chains in the Genus database with same CATH superfamily
5DG0A 1VYBA 1DEWA 1SI6X 3G0AA 3TEBA 3G00A 3NGQA 1DE9A 4GYZA 5INNA 3N9VA 4B5HA 5INMA 5J3ZA 5J3PA 3FZIA 2DDSA 2VOAA 5J3SA 5A7JA 4QHEA 5EWTA 4K6LF 5CFEA 5HT2A 4FPVA 3NGNA 2V0SA 3NR8A 3L1WA 3G0RA 3G2CA 3WCXA 5INOA 4B5GA 3NGOA 2DDTA 2D1KB 4QHDA 2J63A 5DFJA 2A41B 5A7IA 4LNDA 4F1HB 4B5IA 5INLA 3I48A 4AWNA 2A3ZB 3I5VA 4L21A 5INKA 3G3YA 4A9CA 4F1HA 3CJCD 1ATND 2O3HA 5DV2A 3G8VA 5INQA 4GZ1A 4F1RA 4GZ0A 4L1YA 5DFFA 2IMQX 1HD7A 4QH9A 2JC4A 2A42B 1AKOA 3G91A 4C1RA 5INPA 3MTCA 2ISIA 1ZWXA 5J8NA 4GEWA 4L1ZA 1BIXA 2F1NA 2JC5A 2DNJA 2A40B 2V0RA 3W2XA 3DNIA 1I9ZA 1I9YA 3G1KA 3U8UA 4JG3A 2EI9A 3K55A 2DDRA 3W3DB 5DV4A 5J42A 4GZ2A 4B5MA 3G2DA 3I41A 4PUQA 3MPRA 4RUWA 3G38A 1DNKA 3GA6A 5DFIA 1NTFA 2O3CA 4F1IA 1SR4B 4IEMA 4B5JA 1WDUA 4CMLA 4L20A 5DFHA 1YJHA 2UYRX 3W2YA 2XSWA 3I46A 4B5FA 3G3CA 1E9NA 1DE8A 4CMNA 2F2FB 3G6SA 3G4TA 4FVAA 5CFGA 1Y21A
chains in the Genus database with same CATH topology
5DG0A 1VYBA 1DEWA 1SI6X 3G0AA 3TEBA 3G00A 3NGQA 1DE9A 4GYZA 5INNA 3N9VA 4B5HA 5INMA 5J3ZA 5J3PA 3FZIA 2DDSA 2VOAA 5J3SA 5A7JA 4QHEA 5EWTA 4K6LF 5CFEA 5HT2A 4FPVA 3NGNA 2V0SA 3NR8A 3L1WA 3G0RA 3G2CA 3WCXA 5INOA 4B5GA 3NGOA 2DDTA 2D1KB 4QHDA 2J63A 5DFJA 2A41B 5A7IA 4LNDA 4F1HB 4B5IA 5INLA 3I48A 4AWNA 2A3ZB 3I5VA 4L21A 5INKA 3G3YA 4A9CA 4F1HA 3CJCD 1ATND 2O3HA 5DV2A 3G8VA 5INQA 4GZ1A 4F1RA 4GZ0A 4L1YA 5DFFA 2IMQX 1HD7A 4QH9A 2JC4A 2A42B 1AKOA 3G91A 4C1RA 5INPA 3MTCA 2ISIA 1ZWXA 5J8NA 4GEWA 4L1ZA 1BIXA 2F1NA 2JC5A 2DNJA 2A40B 2V0RA 3W2XA 3DNIA 1I9ZA 1I9YA 3G1KA 3U8UA 4JG3A 2EI9A 3K55A 2DDRA 3W3DB 5DV4A 5J42A 4GZ2A 4B5MA 3G2DA 3I41A 4PUQA 3MPRA 4RUWA 3G38A 1DNKA 3GA6A 5DFIA 1NTFA 2O3CA 4F1IA 1SR4B 4IEMA 4B5JA 1WDUA 4CMLA 4L20A 5DFHA 1YJHA 2UYRX 3W2YA 2XSWA 3I46A 4B5FA 3G3CA 1E9NA 1DE8A 4CMNA 2F2FB 3G6SA 3G4TA 4FVAA 5CFGA 1Y21A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DG0 A;  1VYB A;  1DEW A;  1SI6 X;  3G0A A;  3TEB A;  3G00 A;  3NGQ A;  1DE9 A;  4GYZ A;  5INN A;  3N9V A;  4B5H A;  5INM A;  5J3Z A;  5J3P A;  3FZI A;  2DDS A;  2VOA A;  5J3S A;  5A7J A;  4QHE A;  5EWT A;  4K6L F;  5CFE A;  5HT2 A;  4FPV A;  3NGN A;  2V0S A;  3NR8 A;  3L1W A;  3G0R A;  3G2C A;  3WCX A;  5INO A;  4B5G A;  3NGO A;  2DDT A;  2D1K B;  4QHD A;  2J63 A;  5DFJ A;  2A41 B;  5A7I A;  4LND A;  4F1H B;  4B5I A;  5INL A;  3I48 A;  4AWN A;  2A3Z B;  3I5V A;  4L21 A;  5INK A;  3G3Y A;  4A9C A;  4F1H A;  3CJC D;  1ATN D;  2O3H A;  5DV2 A;  3G8V A;  5INQ A;  4GZ1 A;  4F1R A;  4GZ0 A;  4L1Y A;  5DFF A;  2IMQ X;  1HD7 A;  4QH9 A;  2JC4 A;  2A42 B;  1AKO A;  3G91 A;  4C1R A;  5INP A;  3MTC A;  2ISI A;  1ZWX A;  5J8N A;  4GEW A;  4L1Z A;  1BIX A;  2F1N A;  2JC5 A;  2DNJ A;  2A40 B;  2V0R A;  3W2X A;  3DNI A;  1I9Z A;  1I9Y A;  3G1K A;  3U8U A;  4JG3 A;  2EI9 A;  3K55 A;  2DDR A;  3W3D B;  5DV4 A;  5J42 A;  4GZ2 A;  4B5M A;  3G2D A;  3I41 A;  4PUQ A;  3MPR A;  4RUW A;  3G38 A;  1DNK A;  3GA6 A;  5DFI A;  1NTF A;  2O3C A;  4F1I A;  1SR4 B;  4IEM A;  4B5J A;  1WDU A;  4CML A;  4L20 A;  5DFH A;  1YJH A;  2UYR X;  3W2Y A;  2XSW A;  3I46 A;  4B5F A;  3G3C A;  1E9N A;  1DE8 A;  4CMN A;  2F2F B;  3G6S A;  3G4T A;  4FVA A;  5CFG A;  1Y21 A; 
#chains in the Genus database with same CATH topology
 5DG0 A;  1VYB A;  1DEW A;  1SI6 X;  3G0A A;  3TEB A;  3G00 A;  3NGQ A;  1DE9 A;  4GYZ A;  5INN A;  3N9V A;  4B5H A;  5INM A;  5J3Z A;  5J3P A;  3FZI A;  2DDS A;  2VOA A;  5J3S A;  5A7J A;  4QHE A;  5EWT A;  4K6L F;  5CFE A;  5HT2 A;  4FPV A;  3NGN A;  2V0S A;  3NR8 A;  3L1W A;  3G0R A;  3G2C A;  3WCX A;  5INO A;  4B5G A;  3NGO A;  2DDT A;  2D1K B;  4QHD A;  2J63 A;  5DFJ A;  2A41 B;  5A7I A;  4LND A;  4F1H B;  4B5I A;  5INL A;  3I48 A;  4AWN A;  2A3Z B;  3I5V A;  4L21 A;  5INK A;  3G3Y A;  4A9C A;  4F1H A;  3CJC D;  1ATN D;  2O3H A;  5DV2 A;  3G8V A;  5INQ A;  4GZ1 A;  4F1R A;  4GZ0 A;  4L1Y A;  5DFF A;  2IMQ X;  1HD7 A;  4QH9 A;  2JC4 A;  2A42 B;  1AKO A;  3G91 A;  4C1R A;  5INP A;  3MTC A;  2ISI A;  1ZWX A;  5J8N A;  4GEW A;  4L1Z A;  1BIX A;  2F1N A;  2JC5 A;  2DNJ A;  2A40 B;  2V0R A;  3W2X A;  3DNI A;  1I9Z A;  1I9Y A;  3G1K A;  3U8U A;  4JG3 A;  2EI9 A;  3K55 A;  2DDR A;  3W3D B;  5DV4 A;  5J42 A;  4GZ2 A;  4B5M A;  3G2D A;  3I41 A;  4PUQ A;  3MPR A;  4RUW A;  3G38 A;  1DNK A;  3GA6 A;  5DFI A;  1NTF A;  2O3C A;  4F1I A;  1SR4 B;  4IEM A;  4B5J A;  1WDU A;  4CML A;  4L20 A;  5DFH A;  1YJH A;  2UYR X;  3W2Y A;  2XSW A;  3I46 A;  4B5F A;  3G3C A;  1E9N A;  1DE8 A;  4CMN A;  2F2F B;  3G6S A;  3G4T A;  4FVA A;  5CFG A;  1Y21 A; 
#chains in the Genus database with same CATH homology
 5DG0 A;  1VYB A;  1DEW A;  1SI6 X;  3G0A A;  3TEB A;  3G00 A;  3NGQ A;  1DE9 A;  4GYZ A;  5INN A;  3N9V A;  4B5H A;  5INM A;  5J3Z A;  5J3P A;  3FZI A;  2DDS A;  2VOA A;  5J3S A;  5A7J A;  4QHE A;  5EWT A;  4K6L F;  5CFE A;  5HT2 A;  4FPV A;  3NGN A;  2V0S A;  3NR8 A;  3L1W A;  3G0R A;  3G2C A;  3WCX A;  5INO A;  4B5G A;  3NGO A;  2DDT A;  2D1K B;  4QHD A;  2J63 A;  5DFJ A;  2A41 B;  5A7I A;  4LND A;  4F1H B;  4B5I A;  5INL A;  3I48 A;  4AWN A;  2A3Z B;  3I5V A;  4L21 A;  5INK A;  3G3Y A;  4A9C A;  4F1H A;  3CJC D;  1ATN D;  2O3H A;  5DV2 A;  3G8V A;  5INQ A;  4GZ1 A;  4F1R A;  4GZ0 A;  4L1Y A;  5DFF A;  2IMQ X;  1HD7 A;  4QH9 A;  2JC4 A;  2A42 B;  1AKO A;  3G91 A;  4C1R A;  5INP A;  3MTC A;  2ISI A;  1ZWX A;  5J8N A;  4GEW A;  4L1Z A;  1BIX A;  2F1N A;  2JC5 A;  2DNJ A;  2A40 B;  2V0R A;  3W2X A;  3DNI A;  1I9Z A;  1I9Y A;  3G1K A;  3U8U A;  4JG3 A;  2EI9 A;  3K55 A;  2DDR A;  3W3D B;  5DV4 A;  5J42 A;  4GZ2 A;  4B5M A;  3G2D A;  3I41 A;  4PUQ A;  3MPR A;  4RUW A;  3G38 A;  1DNK A;  3GA6 A;  5DFI A;  1NTF A;  2O3C A;  4F1I A;  1SR4 B;  4IEM A;  4B5J A;  1WDU A;  4CML A;  4L20 A;  5DFH A;  1YJH A;  2UYR X;  3W2Y A;  2XSW A;  3I46 A;  4B5F A;  3G3C A;  1E9N A;  1DE8 A;  4CMN A;  2F2F B;  3G6S A;  3G4T A;  4FVA A;  5CFG A;  1Y21 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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