3NIHA

The structure of ubr box (riaaa)
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
79
structure length
79
Chain Sequence
VHKHTGRNCGRKFKIGEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHVCTDICTEFTSGICDCGDEEAWNSPLHCKAEE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Metal binding protein
molecule keywords E3 ubiquitin-protein ligase UBR1
publication title Structural basis for the recognition of N-end rule substrates by the UBR box of ubiquitin ligases
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 16
structure length 79
sequence length 79
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2010-06-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02207 zf-UBR Putative zinc finger in N-recognin (UBR box)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.110.30 Mainly Beta Ribbon Cysteine Rich Protein Cysteine Rich Protein 3nihA01
3NIHA 3NIJA 3NISA 3NIMA 3NIKA 3NINA 3NILA
chains in the Genus database with same CATH superfamily
4HI8B 2XJYA 5FY0A 1V6GA 2XJZA 2LZUA 2MIUA 3ZLIA 3NISA 1X63A 5LKUA 5LKZA 2XQNT 2EGQA 1X64A 1IMLA 2O10A 1X68A 1WYHA 2DFYC 2CORA 4BHWA 5A1LA 4KFZA 4EZ4A 1CTLA 3ZPOA 2MBVA 2DLOA 2L4ZA 5LKTA 2DJ7A 1G47A 1J2OA 3NIMA 5FY7A 2EHEA 1RUTX 1X62A 2O13A 3NIJA 5LKXA 2XUEA 2L6YB 3F6QB 5FXVA 5FXZA 3NIKA 2D8YA 1CXXA 4ASKA 4EYUA 2CU8A 1WIGA 4HI9B 1IBIA 2L6ZC 3NILA 3MMKA 5FY1A 1U5SB 2CURA 2D8ZA 5FXXA 2JTNA 3NIHA 1B8TA 4UF0A 2LXDA 1NYPA 3IXEB 5FXWA 1X6AA 2DARA 1M3VA 1X3HA 5FP3A 4UF0B 2CUPA 2KBXB 1QLIA 2D8XA 1X4LA 2CO8A 5FYMA 3AVRA 1X61A 2IYBE 1A7IA 3AVSA 4EZHA 2YPAC 2CUQA 3NINA 4JCJA
chains in the Genus database with same CATH topology
4HI8B 2XJYA 5FY0A 1V6GA 2XJZA 2LZUA 2MIUA 3ZLIA 3NISA 1X63A 5LKUA 5LKZA 2XQNT 2EGQA 1X64A 1IMLA 2O10A 1X68A 1WYHA 2DFYC 2CORA 4BHWA 5A1LA 4KFZA 4EZ4A 1CTLA 3ZPOA 2MBVA 2DLOA 2L4ZA 5LKTA 2DJ7A 1G47A 1J2OA 3NIMA 5FY7A 2EHEA 1RUTX 1X62A 2O13A 3NIJA 5LKXA 2XUEA 2L6YB 3F6QB 5FXVA 5FXZA 3NIKA 2D8YA 1CXXA 4ASKA 4EYUA 2CU8A 1WIGA 4HI9B 1IBIA 2L6ZC 3NILA 3MMKA 5FY1A 1U5SB 2CURA 2D8ZA 5FXXA 2JTNA 3NIHA 1B8TA 4UF0A 2LXDA 1NYPA 3IXEB 5FXWA 1X6AA 2DARA 1M3VA 1X3HA 5FP3A 4UF0B 2CUPA 2KBXB 1QLIA 2D8XA 1X4LA 2CO8A 5FYMA 3AVRA 1X61A 2IYBE 1A7IA 3AVSA 4EZHA 2YPAC 2CUQA 3NINA 4JCJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NIH A;  3NIJ A;  3NIS A;  3NIM A;  3NIK A;  3NIN A;  3NIL A; 
#chains in the Genus database with same CATH topology
 4HI8 B;  2XJY A;  5FY0 A;  1V6G A;  2XJZ A;  2LZU A;  2MIU A;  3ZLI A;  3NIS A;  1X63 A;  5LKU A;  5LKZ A;  2XQN T;  2EGQ A;  1X64 A;  1IML A;  2O10 A;  1X68 A;  1WYH A;  2DFY C;  2COR A;  4BHW A;  5A1L A;  4KFZ A;  4EZ4 A;  1CTL A;  3ZPO A;  2MBV A;  2DLO A;  2L4Z A;  5LKT A;  2DJ7 A;  1G47 A;  1J2O A;  3NIM A;  5FY7 A;  2EHE A;  1RUT X;  1X62 A;  2O13 A;  3NIJ A;  5LKX A;  2XUE A;  2L6Y B;  3F6Q B;  5FXV A;  5FXZ A;  3NIK A;  2D8Y A;  1CXX A;  4ASK A;  4EYU A;  2CU8 A;  1WIG A;  4HI9 B;  1IBI A;  2L6Z C;  3NIL A;  3MMK A;  5FY1 A;  1U5S B;  2CUR A;  2D8Z A;  5FXX A;  2JTN A;  3NIH A;  1B8T A;  4UF0 A;  2LXD A;  1NYP A;  3IXE B;  5FXW A;  1X6A A;  2DAR A;  1M3V A;  1X3H A;  5FP3 A;  4UF0 B;  2CUP A;  2KBX B;  1QLI A;  2D8X A;  1X4L A;  2CO8 A;  5FYM A;  3AVR A;  1X61 A;  2IYB E;  1A7I A;  3AVS A;  4EZH A;  2YPA C;  2CUQ A;  3NIN A;  4JCJ A; 
#chains in the Genus database with same CATH homology
 4HI8 B;  2XJY A;  5FY0 A;  1V6G A;  2XJZ A;  2LZU A;  2MIU A;  3ZLI A;  3NIS A;  1X63 A;  5LKU A;  5LKZ A;  2XQN T;  2EGQ A;  1X64 A;  1IML A;  2O10 A;  1X68 A;  1WYH A;  2DFY C;  2COR A;  4BHW A;  5A1L A;  4KFZ A;  4EZ4 A;  1CTL A;  3ZPO A;  2MBV A;  2DLO A;  2L4Z A;  5LKT A;  2DJ7 A;  1G47 A;  1J2O A;  3NIM A;  5FY7 A;  2EHE A;  1RUT X;  1X62 A;  2O13 A;  3NIJ A;  5LKX A;  2XUE A;  2L6Y B;  3F6Q B;  5FXV A;  5FXZ A;  3NIK A;  2D8Y A;  1CXX A;  4ASK A;  4EYU A;  2CU8 A;  1WIG A;  4HI9 B;  1IBI A;  2L6Z C;  3NIL A;  3MMK A;  5FY1 A;  1U5S B;  2CUR A;  2D8Z A;  5FXX A;  2JTN A;  3NIH A;  1B8T A;  4UF0 A;  2LXD A;  1NYP A;  3IXE B;  5FXW A;  1X6A A;  2DAR A;  1M3V A;  1X3H A;  5FP3 A;  4UF0 B;  2CUP A;  2KBX B;  1QLI A;  2D8X A;  1X4L A;  2CO8 A;  5FYM A;  3AVR A;  1X61 A;  2IYB E;  1A7I A;  3AVS A;  4EZH A;  2YPA C;  2CUQ A;  3NIN A;  4JCJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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