The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
16
|
sequence length |
80
|
structure length |
80
|
Chain Sequence |
VHKHTGRNCGRKFKIGEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHVCTDICTEFTSGICDCGDEEAWNSPLHCKAEEQ
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Metal binding protein
|
| molecule keywords |
E3 ubiquitin-protein ligase UBR1
|
| publication title |
Structural basis for the recognition of N-end rule substrates by the UBR box of ubiquitin ligases
pubmed doi rcsb |
| source organism |
Saccharomyces cerevisiae
|
| total genus |
16
|
| structure length |
80
|
| sequence length |
80
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
2.3.2.27: RING-type E3 ubiquitin transferase. |
| pdb deposition date | 2010-06-16 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02207 | zf-UBR | Putative zinc finger in N-recognin (UBR box) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Ribbon | Cysteine Rich Protein | Cysteine Rich Protein |
#chains in the Genus database with same CATH superfamily 3NIH A; 3NIK A; 3NIJ A; 3NIL A; 3NIM A; 3NIN A; 3NIS A; #chains in the Genus database with same CATH topology 2LZU A; 2CUR A; 2L4Z A; 5FY1 A; 2XJZ A; 1NYP A; 1U5S B; 4HI8 B; 5LKZ A; 5FY7 A; 1CXX A; 5FXV A; 1G47 A; 1WIG A; 3AVR A; 1RUT X; 5FYM A; 1X64 A; 3NIJ A; 2D8Z A; 3MMK A; 2CU8 A; 2DAR A; 1CTL A; 3NIK A; 2CUP A; 2O10 A; 5FP3 A; 2CO8 A; 3NIS A; 4UF0 B; 5FXW A; 4UF0 A; 2IYB E; 5FY0 A; 2JTN A; 4BHW A; 5A1L A; 4EZH A; 2XQN T; 2MIU A; 1IML A; 3NIN A; 2D8Y A; 2L6Y B; 1A7I A; 5FXZ A; 4JCJ A; 2L6Z C; 2DLO A; 1B8T A; 2O13 A; 2DJ7 A; 3NIH A; 1X6A A; 3ZLI A; 1WYH A; 5LKX A; 1X62 A; 4EYU A; 5LKT A; 1X63 A; 2COR A; 2KBX B; 4KFZ A; 3NIL A; 4HI9 B; 2YPA C; 1V6G A; 5LKU A; 2LXD A; 3NIM A; 1X68 A; 3AVS A; 1X61 A; 2XUE A; 4ASK A; 2XJY A; 1IBI A; 1X3H A; 2EGQ A; 3ZPO A; 1M3V A; 3F6Q B; 1X4L A; 2MBV A; 5FXX A; 2EHE A; 4EZ4 A; 1J2O A; 2D8X A; 3IXE B; 1QLI A; 2DFY C; 2CUQ A; #chains in the Genus database with same CATH homology 2LZU A; 2CUR A; 2L4Z A; 5FY1 A; 2XJZ A; 1NYP A; 1U5S B; 4HI8 B; 5LKZ A; 5FY7 A; 1CXX A; 5FXV A; 1G47 A; 1WIG A; 3AVR A; 1RUT X; 5FYM A; 1X64 A; 3NIJ A; 2D8Z A; 3MMK A; 2CU8 A; 2DAR A; 1CTL A; 3NIK A; 2CUP A; 2O10 A; 5FP3 A; 2CO8 A; 3NIS A; 4UF0 B; 5FXW A; 4UF0 A; 2IYB E; 5FY0 A; 2JTN A; 4BHW A; 5A1L A; 4EZH A; 2XQN T; 2MIU A; 1IML A; 3NIN A; 2D8Y A; 2L6Y B; 1A7I A; 5FXZ A; 4JCJ A; 2L6Z C; 2DLO A; 1B8T A; 2O13 A; 2DJ7 A; 3NIH A; 1X6A A; 3ZLI A; 1WYH A; 5LKX A; 1X62 A; 4EYU A; 5LKT A; 1X63 A; 2COR A; 2KBX B; 4KFZ A; 3NIL A; 4HI9 B; 2YPA C; 1V6G A; 5LKU A; 2LXD A; 3NIM A; 1X68 A; 3AVS A; 1X61 A; 2XUE A; 4ASK A; 2XJY A; 1IBI A; 1X3H A; 2EGQ A; 3ZPO A; 1M3V A; 3F6Q B; 1X4L A; 2MBV A; 5FXX A; 2EHE A; 4EZ4 A; 1J2O A; 2D8X A; 3IXE B; 1QLI A; 2DFY C; 2CUQ A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
