3NIQA

Crystal structure of pseudomonas aeruginosa guanidinopropionase
Total Genus 116
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
116
Knots found
sequence length
315
structure length
315
Chain Sequence
DHPQPLDAAEIPRFAGIPTFMRLPAFTDPAALQVGLIGVPWDGGTTNRAGARHGPREVRNLSSLMRKVHHVSRIAPYDLVRVGDLGDAPVNPIDLLDSLRRIEGFYRQVHAAGTLPLSVGGDHLVTLPIFRALGRERPLGMVHFDAHSDTNDRYFGDNPYTHGTPFRRAIEEGLLDPLRTVQIGIRGSVYSPDDDAFARECGIRVIHMEEFVELGVEATLAEARRVVGAGPTYVSFDVDVLDPAFAPGTGTPEIGGMTSLQAQQLVRGLRGLDLVGADVVEVSPPFDVGGATALVGATMMFELLCLLAESAARSA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 3-guanidinopropionase
publication title Crystal structures of Pseudomonas aeruginosa guanidinobutyrase and guanidinopropionase, members of the ureohydrolase superfamily
pubmed doi rcsb
source organism Pseudomonas aeruginosa
molecule tags Hydrolase
total genus 116
structure length 315
sequence length 315
chains with identical sequence B
other databases KnotProt 2.0: S +31 +31 +31
ec nomenclature ec 3.5.3.17: Guanidinopropionase.
pdb deposition date 2010-06-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 3niqA00
1WOIA 4IXVA 3MJLA 1GQ6A 1T4SA 4HXQA 1D3VA 3LHLA 1WOHA 1RLAA 4RHKA 4IU4A 1HQHA 4IU0A 1P8QA 4IU1A 1TBHA 3NIPA 1P8MA 1HQGA 1ZPEA 3MFVA 1TA1A 4Q40A 1P8RA 5RLAA 4RHIA 3SL1A 1TBJA 1TBLA 1GQ7A 4CEVA 1T5FA 5HJ9A 1T4PA 4IU5A 4Q3RC 4MYKA 3E8ZA 1T4RA 3E6KA 3THJA 1HQFA 3LP7A 3NIQA 3GN0A 1ZPGA 2EIVA 1PQ3A 4ITYA 4MYNA 2EF5A 3MMRA 3E6VA 4Q42A 4Q3RA 3GMZA 4Q41A 3DJ8A 4RHJA 4FCIA 1WVAA 2PHAA 4MYLA 4Q3SA 3LP4A 4RHQA 3F80A 4HWWA 2RLAA 3E9BA 3M1RA 4GSVA 1HQXA 1WVBA 4Q3VA 4MYFA 1P8OA 2A0MA 3THEA 4GWDA 4Q3TA 5CEVA 1CEVA 2AEBA 4Q3UA 3E8QA 4IE1A 2CEVA 1HQ5A 3NIOA 3SJTA 4IXUA 2PHOA 4I06A 4GSZA 4FCKA 4HZEA 2PLLA 3TH7A 1T4TA 4G3HA 3TF3A 4DZ4A 3CEVA 3SL0A 1P8SA 3KV2A 5HJAA 3PZLA 1P8NA 4MXRA 3THHA 2EF4A 4IE3A 1R1OA 4Q3QA 4GWCA 4Q3PA 1P8PA 2ZAVA 3MFWA 4RHLA 4GSMA 4RLAA 4IE2A 3RLAA 4RHMA 1XFKA 1WOGA 1T5GA 3SKKA
chains in the Genus database with same CATH superfamily
3SKKA 1WOIA 4IXVA 3MJLA 5G0GA 1GQ6A 1T4SA 3Q9FA 4HXQA 1D3VA 3LHLA 1WOHA 3Q9CA 5G11A 4LY1A 5EF7A 4QA3A 5G1BA 1RLAA 3MZ6A 4IU4A 4RHKA 1HQHA 4IU0A 1P8QA 4IU1A 1TBHA 3NIPA 1P8MA 1HQGA 1ZPEA 1WOGA 1TA1A 3MFVA 4Q40A 1P8RA 5RLAA 4RN1A 4RHIA 3SL1A 4BZ9A 3SFHA 1TBJA 3MZ7A 1TBLA 4BZ6A 1GQ7A 4QA1A 4CEVA 1T5FA 5HJ9A 1T4PA 1C3SA 3F07A 1W22A 4CBTA 2VCGA 4RN2A 4IU5A 4Q3RC 4MYKA 4BZ5A 4CBYA 3MENA 3E8ZA 1VKGA 5G12A 5D1DA 2VQVA 5EENA 3EZTA 5G3WA 1T4RA 3E6KA 2V5XA 1HQFA 3LP7A 3MAXA 3GN0A 3NIQA 4QA5A 3THJA 5FUEA 1ZPGA 5THTA 2EIVA 1PQ3A 4BZ7A 4QA6A 4QA2A 5THSA 1ZZ1A 4ZUMA 5IX0A 3EZPA 5ICNB 5DC7A 5EEFA 3Q9BA 4ITYA 4MYNA 2EF5A 5EFBD 3MMRA 3E6VA 4Q42A 4Q3RA 3GMZA 3ZNRA 4Q41A 3DJ8A 3Q9EA 2GH6A 4RHJA 5G13A 5BWZA 4FCIA 1WVAA 2PHAA 4MYLA 4Q3SA 4ZURA 3LP4A 4RHQA 5EF8A 1ZZ3A 3F06A 3F80A 2VQOA 2RLAA 1T64A 4HWWA 5IWGA 3E9BA 3M1RA 3C10A 4GSVA 3SFFA 3EW8A 1HQXA 1WVBA 1ZZ0A 4MYFA 1P8OA 2A0MA 4Q3VA 3RQDA 5EEKA 4ZUQA 5D1BA 3THEA 5D1CA 4GWDA 4ZUOA 5LI3A 4Q3TA 5CEVA 1CEVA 2AEBA 2VQJA 1C3RA 4ZUPA 4Q3UA 3E8QA 4IE1A 2VQMA 2CEVA 3EWFA 5DC5A 1T69A 5EFHA 1HQ5A 3C0YA 5DC6A 5G1CA 4A69A 4BZ8A 4QA7A 5EFKB 5FCWA 5JI5A 3NIOA 3SJTA 5A2SA 4IXUA 5EFJD 2PHOA 4I06A 5DC8A 4GSZA 4FCKA 4HZEA 5G0IA 2PLLA 5EEMA 5G0YA 3TH7A 1T4TA 4G3HA 3TF3A 5G1AA 5THUA 4DZ4A 3CEVA 3SL0A 1P8SA 2VQWG 3KV2A 5G10A 5HJAA 2VQQA 3PZLA 1P8NA 4MXRA 3THHA 2EF4A 4IE3A 1R1OA 4Q3QA 5EEIA 5G0XA 4GWCA 4Q3PA 4RN0A 3F0RA 4QA4A 5G0JA 1P8PA 2ZAVA 3MZ4A 3MFWA 1C3PA 5G17A 4RHLA 4GSMA 4BKXB 5EFNA 4RLAA 5EFGA 4QA0A 2V5WA 4IE2A 3RLAA 5G0HA 5THVA 4RHMA 4CQFA 4LXZA 3ZNSA 1XFKA 3MZ3A 1T67A 1T5GA 3C0ZA 4ZUNA
chains in the Genus database with same CATH topology
1WOIA 4IXVA 3MJLA 1GQ6A 1T4SA 4HXQA 1D3VA 3LHLA 1WOHA 1RLAA 4RHKA 4IU4A 1HQHA 4IU0A 1P8QA 4IU1A 1TBHA 3NIPA 1P8MA 1HQGA 1ZPEA 3MFVA 1TA1A 4Q40A 1P8RA 5RLAA 4RHIA 3SL1A 1TBJA 1TBLA 1GQ7A 4CEVA 1T5FA 5HJ9A 1T4PA 4IU5A 4Q3RC 4MYKA 3E8ZA 1T4RA 3E6KA 3THJA 1HQFA 3LP7A 3NIQA 3GN0A 1ZPGA 2EIVA 1PQ3A 4ITYA 4MYNA 2EF5A 3MMRA 3E6VA 4Q42A 4Q3RA 3GMZA 4Q41A 3DJ8A 4RHJA 4FCIA 1WVAA 2PHAA 4MYLA 4Q3SA 3LP4A 4RHQA 3F80A 4HWWA 2RLAA 3E9BA 3M1RA 4GSVA 1HQXA 1WVBA 4Q3VA 4MYFA 1P8OA 2A0MA 3THEA 4GWDA 4Q3TA 5CEVA 1CEVA 2AEBA 4Q3UA 3E8QA 4IE1A 2CEVA 1HQ5A 3NIOA 3SJTA 4IXUA 2PHOA 4I06A 4GSZA 4FCKA 4HZEA 2PLLA 3TH7A 1T4TA 4G3HA 3TF3A 4DZ4A 3CEVA 3SL0A 1P8SA 3KV2A 5HJAA 3PZLA 1P8NA 4MXRA 3THHA 2EF4A 4IE3A 1R1OA 4Q3QA 4GWCA 4Q3PA 1P8PA 2ZAVA 3MFWA 4RHLA 4GSMA 4RLAA 4IE2A 3RLAA 4RHMA 1XFKA 1WOGA 1T5GA 3SKKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WOI A;  4IXV A;  3MJL A;  1GQ6 A;  1T4S A;  4HXQ A;  1D3V A;  3LHL A;  1WOH A;  1RLA A;  4RHK A;  4IU4 A;  1HQH A;  4IU0 A;  1P8Q A;  4IU1 A;  1TBH A;  3NIP A;  1P8M A;  1HQG A;  1ZPE A;  3MFV A;  1TA1 A;  4Q40 A;  1P8R A;  5RLA A;  4RHI A;  3SL1 A;  1TBJ A;  1TBL A;  1GQ7 A;  4CEV A;  1T5F A;  5HJ9 A;  1T4P A;  4IU5 A;  4Q3R C;  4MYK A;  3E8Z A;  1T4R A;  3E6K A;  3THJ A;  1HQF A;  3LP7 A;  3NIQ A;  3GN0 A;  1ZPG A;  2EIV A;  1PQ3 A;  4ITY A;  4MYN A;  2EF5 A;  3MMR A;  3E6V A;  4Q42 A;  4Q3R A;  3GMZ A;  4Q41 A;  3DJ8 A;  4RHJ A;  4FCI A;  1WVA A;  2PHA A;  4MYL A;  4Q3S A;  3LP4 A;  4RHQ A;  3F80 A;  4HWW A;  2RLA A;  3E9B A;  3M1R A;  4GSV A;  1HQX A;  1WVB A;  4Q3V A;  4MYF A;  1P8O A;  2A0M A;  3THE A;  4GWD A;  4Q3T A;  5CEV A;  1CEV A;  2AEB A;  4Q3U A;  3E8Q A;  4IE1 A;  2CEV A;  1HQ5 A;  3NIO A;  3SJT A;  4IXU A;  2PHO A;  4I06 A;  4GSZ A;  4FCK A;  4HZE A;  2PLL A;  3TH7 A;  1T4T A;  4G3H A;  3TF3 A;  4DZ4 A;  3CEV A;  3SL0 A;  1P8S A;  3KV2 A;  5HJA A;  3PZL A;  1P8N A;  4MXR A;  3THH A;  2EF4 A;  4IE3 A;  1R1O A;  4Q3Q A;  4GWC A;  4Q3P A;  1P8P A;  2ZAV A;  3MFW A;  4RHL A;  4GSM A;  4RLA A;  4IE2 A;  3RLA A;  4RHM A;  1XFK A;  1WOG A;  1T5G A;  3SKK A; 
#chains in the Genus database with same CATH topology
 3SKK A;  1WOI A;  4IXV A;  3MJL A;  5G0G A;  1GQ6 A;  1T4S A;  3Q9F A;  4HXQ A;  1D3V A;  3LHL A;  1WOH A;  3Q9C A;  5G11 A;  4LY1 A;  5EF7 A;  4QA3 A;  5G1B A;  1RLA A;  3MZ6 A;  4IU4 A;  4RHK A;  1HQH A;  4IU0 A;  1P8Q A;  4IU1 A;  1TBH A;  3NIP A;  1P8M A;  1HQG A;  1ZPE A;  1WOG A;  1TA1 A;  3MFV A;  4Q40 A;  1P8R A;  5RLA A;  4RN1 A;  4RHI A;  3SL1 A;  4BZ9 A;  3SFH A;  1TBJ A;  3MZ7 A;  1TBL A;  4BZ6 A;  1GQ7 A;  4QA1 A;  4CEV A;  1T5F A;  5HJ9 A;  1T4P A;  1C3S A;  3F07 A;  1W22 A;  4CBT A;  2VCG A;  4RN2 A;  4IU5 A;  4Q3R C;  4MYK A;  4BZ5 A;  4CBY A;  3MEN A;  3E8Z A;  1VKG A;  5G12 A;  5D1D A;  2VQV A;  5EEN A;  3EZT A;  5G3W A;  1T4R A;  3E6K A;  2V5X A;  1HQF A;  3LP7 A;  3MAX A;  3GN0 A;  3NIQ A;  4QA5 A;  3THJ A;  5FUE A;  1ZPG A;  5THT A;  2EIV A;  1PQ3 A;  4BZ7 A;  4QA6 A;  4QA2 A;  5THS A;  1ZZ1 A;  4ZUM A;  5IX0 A;  3EZP A;  5ICN B;  5DC7 A;  5EEF A;  3Q9B A;  4ITY A;  4MYN A;  2EF5 A;  5EFB D;  3MMR A;  3E6V A;  4Q42 A;  4Q3R A;  3GMZ A;  3ZNR A;  4Q41 A;  3DJ8 A;  3Q9E A;  2GH6 A;  4RHJ A;  5G13 A;  5BWZ A;  4FCI A;  1WVA A;  2PHA A;  4MYL A;  4Q3S A;  4ZUR A;  3LP4 A;  4RHQ A;  5EF8 A;  1ZZ3 A;  3F06 A;  3F80 A;  2VQO A;  2RLA A;  1T64 A;  4HWW A;  5IWG A;  3E9B A;  3M1R A;  3C10 A;  4GSV A;  3SFF A;  3EW8 A;  1HQX A;  1WVB A;  1ZZ0 A;  4MYF A;  1P8O A;  2A0M A;  4Q3V A;  3RQD A;  5EEK A;  4ZUQ A;  5D1B A;  3THE A;  5D1C A;  4GWD A;  4ZUO A;  5LI3 A;  4Q3T A;  5CEV A;  1CEV A;  2AEB A;  2VQJ A;  1C3R A;  4ZUP A;  4Q3U A;  3E8Q A;  4IE1 A;  2VQM A;  2CEV A;  3EWF A;  5DC5 A;  1T69 A;  5EFH A;  1HQ5 A;  3C0Y A;  5DC6 A;  5G1C A;  4A69 A;  4BZ8 A;  4QA7 A;  5EFK B;  5FCW A;  5JI5 A;  3NIO A;  3SJT A;  5A2S A;  4IXU A;  5EFJ D;  2PHO A;  4I06 A;  5DC8 A;  4GSZ A;  4FCK A;  4HZE A;  5G0I A;  2PLL A;  5EEM A;  5G0Y A;  3TH7 A;  1T4T A;  4G3H A;  3TF3 A;  5G1A A;  5THU A;  4DZ4 A;  3CEV A;  3SL0 A;  1P8S A;  2VQW G;  3KV2 A;  5G10 A;  5HJA A;  2VQQ A;  3PZL A;  1P8N A;  4MXR A;  3THH A;  2EF4 A;  4IE3 A;  1R1O A;  4Q3Q A;  5EEI A;  5G0X A;  4GWC A;  4Q3P A;  4RN0 A;  3F0R A;  4QA4 A;  5G0J A;  1P8P A;  2ZAV A;  3MZ4 A;  3MFW A;  1C3P A;  5G17 A;  4RHL A;  4GSM A;  4BKX B;  5EFN A;  4RLA A;  5EFG A;  4QA0 A;  2V5W A;  4IE2 A;  3RLA A;  5G0H A;  5THV A;  4RHM A;  4CQF A;  4LXZ A;  3ZNS A;  1XFK A;  3MZ3 A;  1T67 A;  1T5G A;  3C0Z A;  4ZUN A; 
#chains in the Genus database with same CATH homology
 1WOI A;  4IXV A;  3MJL A;  1GQ6 A;  1T4S A;  4HXQ A;  1D3V A;  3LHL A;  1WOH A;  1RLA A;  4RHK A;  4IU4 A;  1HQH A;  4IU0 A;  1P8Q A;  4IU1 A;  1TBH A;  3NIP A;  1P8M A;  1HQG A;  1ZPE A;  3MFV A;  1TA1 A;  4Q40 A;  1P8R A;  5RLA A;  4RHI A;  3SL1 A;  1TBJ A;  1TBL A;  1GQ7 A;  4CEV A;  1T5F A;  5HJ9 A;  1T4P A;  4IU5 A;  4Q3R C;  4MYK A;  3E8Z A;  1T4R A;  3E6K A;  3THJ A;  1HQF A;  3LP7 A;  3NIQ A;  3GN0 A;  1ZPG A;  2EIV A;  1PQ3 A;  4ITY A;  4MYN A;  2EF5 A;  3MMR A;  3E6V A;  4Q42 A;  4Q3R A;  3GMZ A;  4Q41 A;  3DJ8 A;  4RHJ A;  4FCI A;  1WVA A;  2PHA A;  4MYL A;  4Q3S A;  3LP4 A;  4RHQ A;  3F80 A;  4HWW A;  2RLA A;  3E9B A;  3M1R A;  4GSV A;  1HQX A;  1WVB A;  4Q3V A;  4MYF A;  1P8O A;  2A0M A;  3THE A;  4GWD A;  4Q3T A;  5CEV A;  1CEV A;  2AEB A;  4Q3U A;  3E8Q A;  4IE1 A;  2CEV A;  1HQ5 A;  3NIO A;  3SJT A;  4IXU A;  2PHO A;  4I06 A;  4GSZ A;  4FCK A;  4HZE A;  2PLL A;  3TH7 A;  1T4T A;  4G3H A;  3TF3 A;  4DZ4 A;  3CEV A;  3SL0 A;  1P8S A;  3KV2 A;  5HJA A;  3PZL A;  1P8N A;  4MXR A;  3THH A;  2EF4 A;  4IE3 A;  1R1O A;  4Q3Q A;  4GWC A;  4Q3P A;  1P8P A;  2ZAV A;  3MFW A;  4RHL A;  4GSM A;  4RLA A;  4IE2 A;  3RLA A;  4RHM A;  1XFK A;  1WOG A;  1T5G A;  3SKK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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