3NKHA

Crystal structure of integrase from mrsa strain staphylococcus aureus
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
224
structure length
221
Chain Sequence
QSNAYLELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTSSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Integrase
publication title Crystal Structure of Integrase from MRSA strain Staphylococcus aureus
rcsb
source organism Staphylococcus aureus subsp. aureus usa300_tch1516
molecule tags Recombination
total genus 79
structure length 221
sequence length 224
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-06-19
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.10 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A Intergrase catalytic core 3nkhA00
1PVRA 4A8EA 3MGVA 1KBUA 3C29A 1Z1BA 1AE9A 1M6XC 3C28A 1PVQA 1FLOA 2HOFA 5DCFA 1DRGA 3UXUA 1Q3UA 3VCFA 5CRXA 1P4EC 2HOIA 1NZBA 1Z19A 5DORA 1P7DA 1F44A 1Q3VA 1M6XA 4DKSA 1MA7A 5C6KA 1CRXA 1PVPA 1A0PA 3NKHA 3CRXA 1P4EA 1OUQA 2CRXA 1XNSA 2A3VA 4CRXA 1AIHA 1XO0A
chains in the Genus database with same CATH superfamily
1PVRA 4A8EA 3MGVA 1KBUA 4E0JA 3C29A 4DWPA 1AE9A 1Z1BA 3C28A 4E0YA 1M6XC 4E0PA 1PVQA 1FLOA 2HOFA 5DCFA 1DRGA 3UXUA 1Q3UA 3VCFA 5CRXA 1P4EC 4ACOA 2HOIA 1NZBA 4E0ZA 5DORA 1Z19A 1P7DA 1F44A 1Q3VA 1M6XA 4F43A 3T79A 4E0GA 4F41A 4DKSA 2V6EA 1MA7A 5C6KA 1CRXA 1PVPA 4E10A 3SQIA 1A0PA 3NKHA 3CRXA 1P4EA 1OUQA 2CRXA 1XNSA 2A3VA 4CRXA 1AIHA 1XO0A
chains in the Genus database with same CATH topology
1PVRA 4A8EA 3MGVA 1KBUA 3C29A 1Z1BA 1AE9A 1M6XC 3C28A 1PVQA 1FLOA 2HOFA 5DCFA 1DRGA 3UXUA 1Q3UA 3VCFA 5CRXA 1P4EC 2HOIA 1NZBA 1Z19A 5DORA 1P7DA 1F44A 1Q3VA 1M6XA 4DKSA 1MA7A 5C6KA 1CRXA 1PVPA 1A0PA 3NKHA 3CRXA 1P4EA 1OUQA 2CRXA 1XNSA 2A3VA 4CRXA 1AIHA 1XO0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PVR A;  4A8E A;  3MGV A;  1KBU A;  3C29 A;  1Z1B A;  1AE9 A;  1M6X C;  3C28 A;  1PVQ A;  1FLO A;  2HOF A;  5DCF A;  1DRG A;  3UXU A;  1Q3U A;  3VCF A;  5CRX A;  1P4E C;  2HOI A;  1NZB A;  1Z19 A;  5DOR A;  1P7D A;  1F44 A;  1Q3V A;  1M6X A;  4DKS A;  1MA7 A;  5C6K A;  1CRX A;  1PVP A;  1A0P A;  3NKH A;  3CRX A;  1P4E A;  1OUQ A;  2CRX A;  1XNS A;  2A3V A;  4CRX A;  1AIH A;  1XO0 A; 
#chains in the Genus database with same CATH topology
 1PVR A;  4A8E A;  3MGV A;  1KBU A;  4E0J A;  3C29 A;  4DWP A;  1AE9 A;  1Z1B A;  3C28 A;  4E0Y A;  1M6X C;  4E0P A;  1PVQ A;  1FLO A;  2HOF A;  5DCF A;  1DRG A;  3UXU A;  1Q3U A;  3VCF A;  5CRX A;  1P4E C;  4ACO A;  2HOI A;  1NZB A;  4E0Z A;  5DOR A;  1Z19 A;  1P7D A;  1F44 A;  1Q3V A;  1M6X A;  4F43 A;  3T79 A;  4E0G A;  4F41 A;  4DKS A;  2V6E A;  1MA7 A;  5C6K A;  1CRX A;  1PVP A;  4E10 A;  3SQI A;  1A0P A;  3NKH A;  3CRX A;  1P4E A;  1OUQ A;  2CRX A;  1XNS A;  2A3V A;  4CRX A;  1AIH A;  1XO0 A; 
#chains in the Genus database with same CATH homology
 1PVR A;  4A8E A;  3MGV A;  1KBU A;  3C29 A;  1Z1B A;  1AE9 A;  1M6X C;  3C28 A;  1PVQ A;  1FLO A;  2HOF A;  5DCF A;  1DRG A;  3UXU A;  1Q3U A;  3VCF A;  5CRX A;  1P4E C;  2HOI A;  1NZB A;  1Z19 A;  5DOR A;  1P7D A;  1F44 A;  1Q3V A;  1M6X A;  4DKS A;  1MA7 A;  5C6K A;  1CRX A;  1PVP A;  1A0P A;  3NKH A;  3CRX A;  1P4E A;  1OUQ A;  2CRX A;  1XNS A;  2A3V A;  4CRX A;  1AIH A;  1XO0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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