3NKHA

Crystal structure of integrase from mrsa strain staphylococcus aureus
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
224
structure length
221
Chain Sequence
QSNAYLELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTSSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Recombination
molecule keywords Integrase
publication title Crystal Structure of Integrase from MRSA strain Staphylococcus aureus
rcsb
source organism Staphylococcus aureus subsp. aureus usa300_tch1516
total genus 79
structure length 221
sequence length 224
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-06-19
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.10 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A Intergrase catalytic core 3nkhA00
1A0PA 4A8EA 1AIHA 1P4EC 3NKHA 1DRGA 5CRXA 1XO0A 3C28A 1M6XA 1Q3UA 2HOIA 5DCFA 1Z19A 1PVPA 2A3VA 1F44A 1FLOA 1M6XC 1PVQA 1Z1BA 1XNSA 1NZBA 4CRXA 5C6KA 1Q3VA 1KBUA 1OUQA 1P7DA 1PVRA 3VCFA 3MGVA 5DORA 3CRXA 3UXUA 2HOFA 2CRXA 1P4EA 1MA7A 1AE9A 3C29A 4DKSA 1CRXA
chains in the Genus database with same CATH superfamily
1A0PA 4A8EA 4E10A 4F41A 1AIHA 1P4EC 3NKHA 1DRGA 5CRXA 3C28A 1XO0A 1M6XA 1Q3UA 4E0ZA 2HOIA 5DCFA 4DWPA 1Z19A 4E0JA 1PVPA 2A3VA 1F44A 1FLOA 1M6XC 3T79A 1PVQA 1Z1BA 1XNSA 4ACOA 4E0GA 1NZBA 4CRXA 5C6KA 1Q3VA 1KBUA 4F43A 1OUQA 1P7DA 1PVRA 3VCFA 3SQIA 3MGVA 5DORA 4E0PA 3CRXA 3UXUA 2HOFA 2CRXA 4E0YA 1P4EA 1MA7A 2V6EA 1AE9A 3C29A 4DKSA 1CRXA
chains in the Genus database with same CATH topology
1A0PA 4A8EA 1AIHA 1P4EC 3NKHA 1DRGA 5CRXA 1XO0A 3C28A 1M6XA 1Q3UA 2HOIA 5DCFA 1Z19A 1PVPA 2A3VA 1F44A 1FLOA 1M6XC 1PVQA 1Z1BA 1XNSA 1NZBA 4CRXA 5C6KA 1Q3VA 1KBUA 1OUQA 1P7DA 1PVRA 3VCFA 3MGVA 5DORA 3CRXA 3UXUA 2HOFA 2CRXA 1P4EA 1MA7A 1AE9A 3C29A 4DKSA 1CRXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1A0P A;  4A8E A;  1AIH A;  1P4E C;  3NKH A;  1DRG A;  5CRX A;  1XO0 A;  3C28 A;  1M6X A;  1Q3U A;  2HOI A;  5DCF A;  1Z19 A;  1PVP A;  2A3V A;  1F44 A;  1FLO A;  1M6X C;  1PVQ A;  1Z1B A;  1XNS A;  1NZB A;  4CRX A;  5C6K A;  1Q3V A;  1KBU A;  1OUQ A;  1P7D A;  1PVR A;  3VCF A;  3MGV A;  5DOR A;  3CRX A;  3UXU A;  2HOF A;  2CRX A;  1P4E A;  1MA7 A;  1AE9 A;  3C29 A;  4DKS A;  1CRX A; 
#chains in the Genus database with same CATH topology
 1A0P A;  4A8E A;  4E10 A;  4F41 A;  1AIH A;  1P4E C;  3NKH A;  1DRG A;  5CRX A;  3C28 A;  1XO0 A;  1M6X A;  1Q3U A;  4E0Z A;  2HOI A;  5DCF A;  4DWP A;  1Z19 A;  4E0J A;  1PVP A;  2A3V A;  1F44 A;  1FLO A;  1M6X C;  3T79 A;  1PVQ A;  1Z1B A;  1XNS A;  4ACO A;  4E0G A;  1NZB A;  4CRX A;  5C6K A;  1Q3V A;  1KBU A;  4F43 A;  1OUQ A;  1P7D A;  1PVR A;  3VCF A;  3SQI A;  3MGV A;  5DOR A;  4E0P A;  3CRX A;  3UXU A;  2HOF A;  2CRX A;  4E0Y A;  1P4E A;  1MA7 A;  2V6E A;  1AE9 A;  3C29 A;  4DKS A;  1CRX A; 
#chains in the Genus database with same CATH homology
 1A0P A;  4A8E A;  1AIH A;  1P4E C;  3NKH A;  1DRG A;  5CRX A;  1XO0 A;  3C28 A;  1M6X A;  1Q3U A;  2HOI A;  5DCF A;  1Z19 A;  1PVP A;  2A3V A;  1F44 A;  1FLO A;  1M6X C;  1PVQ A;  1Z1B A;  1XNS A;  1NZB A;  4CRX A;  5C6K A;  1Q3V A;  1KBU A;  1OUQ A;  1P7D A;  1PVR A;  3VCF A;  3MGV A;  5DOR A;  3CRX A;  3UXU A;  2HOF A;  2CRX A;  1P4E A;  1MA7 A;  1AE9 A;  3C29 A;  4DKS A;  1CRX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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