3NLAA

Nmr structure of the n-terminal domain with a linker portion of antarctic eel pout antifreeze protein rd3, 40 structures
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
73
structure length
73
Chain Sequence
NKASVVANQLIPINTALTLIMMKAEVVTPMGIPAEEIPNLVGMQVNRAVPLGTTLMPDMVKNYEDGTTSPGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antifreeze
molecule keywords ANTIFREEZE PROTEIN RD3 TYPE III
publication title Structural basis for the binding of a globular antifreeze protein to ice.
pubmed doi rcsb
source organism Lycodichthys dearborni
total genus 6
structure length 73
sequence length 73
ec nomenclature
pdb deposition date 1998-02-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1210.10 Alpha Beta Alpha-Beta Complex Type Iii Antifreeze Protein Isoform Hplc 12 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 3nlaA00
3FRNA 1MSIA 3MSIA 1B7IA 5MSIA 2AMEA 3NLAA 8MSIA 8AMEA 4UR4A 1EKLA 1C89A 1KDFA 2MSJA 1HG7A 3CM4A 4NY6A 4AMEA 9MSIA 1XUZA 4MSIA 2WQPA 6AMEA 2LX3A 3RDNA 2LX2A 2JIAA 3G8RA 6MSIA 7AMEA 2MSIA 1XUUA 1MSJA 1VLIA 7MSIA 4UR6A 2ZDRA 1C8AA 1WVOA 3AMEA 3QF6A 1GZIA 1B7KA 1B7JA 1UCSA 1KDEA 1AMEA 4IPJA 9AMEA 2SPGA 1JABA 4IPIA 1OPSA
chains in the Genus database with same CATH superfamily
3FRNA 1MSIA 3MSIA 1B7IA 5MSIA 2AMEA 3NLAA 8MSIA 8AMEA 4UR4A 1EKLA 1C89A 1KDFA 2MSJA 1HG7A 3CM4A 4NY6A 4AMEA 9MSIA 1XUZA 4MSIA 2WQPA 6AMEA 2LX3A 3RDNA 2LX2A 2JIAA 3G8RA 3K3SA 6MSIA 7AMEA 2MSIA 1XUUA 1MSJA 1VLIA 7MSIA 4UR6A 3LAZA 2ZDRA 1C8AA 1WVOA 3AMEA 3QF6A 1GZIA 1B7KA 1B7JA 1UCSA 1KDEA 1AMEA 4IPJA 9AMEA 2SPGA 1JABA 4IPIA 1OPSA
chains in the Genus database with same CATH topology
3FRNA 1MSIA 3MSIA 1B7IA 5MSIA 2AMEA 3NLAA 8MSIA 8AMEA 4UR4A 1EKLA 1C89A 1KDFA 2MSJA 1HG7A 3CM4A 4NY6A 4AMEA 9MSIA 1XUZA 4MSIA 2WQPA 6AMEA 2LX3A 3RDNA 2LX2A 2JIAA 3G8RA 6MSIA 7AMEA 2MSIA 1XUUA 1MSJA 1VLIA 7MSIA 4UR6A 2ZDRA 1C8AA 1WVOA 3AMEA 3QF6A 1GZIA 1B7KA 1B7JA 1UCSA 1KDEA 1AMEA 4IPJA 9AMEA 2SPGA 1JABA 4IPIA 1OPSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FRN A;  1MSI A;  3MSI A;  1B7I A;  5MSI A;  2AME A;  3NLA A;  8MSI A;  8AME A;  4UR4 A;  1EKL A;  1C89 A;  1KDF A;  2MSJ A;  1HG7 A;  3CM4 A;  4NY6 A;  4AME A;  9MSI A;  1XUZ A;  4MSI A;  2WQP A;  6AME A;  2LX3 A;  3RDN A;  2LX2 A;  2JIA A;  3G8R A;  6MSI A;  7AME A;  2MSI A;  1XUU A;  1MSJ A;  1VLI A;  7MSI A;  4UR6 A;  2ZDR A;  1C8A A;  1WVO A;  3AME A;  3QF6 A;  1GZI A;  1B7K A;  1B7J A;  1UCS A;  1KDE A;  1AME A;  4IPJ A;  9AME A;  2SPG A;  1JAB A;  4IPI A;  1OPS A; 
#chains in the Genus database with same CATH topology
 3FRN A;  1MSI A;  3MSI A;  1B7I A;  5MSI A;  2AME A;  3NLA A;  8MSI A;  8AME A;  4UR4 A;  1EKL A;  1C89 A;  1KDF A;  2MSJ A;  1HG7 A;  3CM4 A;  4NY6 A;  4AME A;  9MSI A;  1XUZ A;  4MSI A;  2WQP A;  6AME A;  2LX3 A;  3RDN A;  2LX2 A;  2JIA A;  3G8R A;  3K3S A;  6MSI A;  7AME A;  2MSI A;  1XUU A;  1MSJ A;  1VLI A;  7MSI A;  4UR6 A;  3LAZ A;  2ZDR A;  1C8A A;  1WVO A;  3AME A;  3QF6 A;  1GZI A;  1B7K A;  1B7J A;  1UCS A;  1KDE A;  1AME A;  4IPJ A;  9AME A;  2SPG A;  1JAB A;  4IPI A;  1OPS A; 
#chains in the Genus database with same CATH homology
 3FRN A;  1MSI A;  3MSI A;  1B7I A;  5MSI A;  2AME A;  3NLA A;  8MSI A;  8AME A;  4UR4 A;  1EKL A;  1C89 A;  1KDF A;  2MSJ A;  1HG7 A;  3CM4 A;  4NY6 A;  4AME A;  9MSI A;  1XUZ A;  4MSI A;  2WQP A;  6AME A;  2LX3 A;  3RDN A;  2LX2 A;  2JIA A;  3G8R A;  6MSI A;  7AME A;  2MSI A;  1XUU A;  1MSJ A;  1VLI A;  7MSI A;  4UR6 A;  2ZDR A;  1C8A A;  1WVO A;  3AME A;  3QF6 A;  1GZI A;  1B7K A;  1B7J A;  1UCS A;  1KDE A;  1AME A;  4IPJ A;  9AME A;  2SPG A;  1JAB A;  4IPI A;  1OPS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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