3NS4A

Structure of a c-terminal fragment of its vps53 subunit suggests similarity of garp to a family of tethering complexes
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
216
structure length
205
Chain Sequence
FILSQFNRDVYKWNFLDKVIDIMTTNFVSNTIRLLQPVPPFSLAGSKRKFETRTVVNIGEQLLLDLELLKEIFHTLPESVSNDSDLRENTSYKRVKRHADNNIDQLLKFIKLLMAPLDSADDYYETYSKLTNNNPDSAVWSFVLALKGIPWDLALWKKMWSAYNLETNRDLFIFKWDKVLLGQFENNLARMQDPNWSKFVRQDLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Protein binding
molecule keywords Vacuolar protein sorting-associated protein 53
publication title Structure of a C-terminal fragment of its Vps53 subunit suggests similarity of Golgi-associated retrograde protein (GARP) complex to a family of tethering complexes.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 69
structure length 205
sequence length 216
ec nomenclature
pdb deposition date 2010-07-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16854 VPS53_C Vacuolar protein sorting-associated protein 53 C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.357.110 Mainly Alpha Orthogonal Bundle Tetracycline Repressor; domain 2 Tetracycline Repressor; domain 2 3ns4A00
3NS4A
chains in the Genus database with same CATH superfamily
5J1UA 3HIMA 4GFKA 5K7ZA 3KYLA 3VPRA 3VW0A 3HTHA 2QOPA 1QVTA 4D7MA 3PASA 2ZCNA 2UXHA 4ACIA 3G1MA 3DPJA 3PPBA 2NP5A 1JUMA 2WGBA 3COLA 4WIBA 1U9NA 3TP3A 2B3WA 2F07A 2FX0A 3BCGA 2FJ1A 4D5CA 3BR2A 3CDLA 2NX4A 3DCFA 3ON4A 5F0CA 3AQSA 3RH2A 4JKZA 2HXIA 3B81A 1ORKA 5C4YA 4PXIA 3SDGA 3BTLA 3GEUA 5IOZA 4JL3A 2GUHA 3HTIA 4I6ZA 3G56A 2VKEA 2O7TA 1VI0A 3BR6A 2XPUA 4IRVA 3BQZA 3KKCA 3VVYA 5AQCA 2NS7A 2G0EA 2RHAA 3VP5A 3CJDA 3LSRA 2XDNA 2OERA 5D19A 2Y30A 1T33A 3IH4A 2ZCMA 2TCTA 3IUVA 3QPLA 3BHQA 2XGCA 4M3GA 2QTQA 2PBXA 3HGGA 3PM1A 4YZEA 3BR5A 5H9TA 4B1RA 2NP3A 2Q24A 5J1YA 2R7WA 4NN1A 2G7LA 3E7QA 5D18A 5EFYA 4M3BA 5EZGA 3HGYA 2X9DA 2UXPA 4AF5A 1A6IA 4GCTA 4B3AA 5K58A 2OI8A 2ID6A 5F04A 2G7GA 5J3LA 4HKUA 4I76A 5D1RA 5F08A 2WV1A 2G3BA 3G7RA 4UDSA 2FJI1 3VVXA 5J1RA 2ZOZA 3ANPA 3MVPA 4DVYP 2D6YA 2Y2ZA 2Y31A 3Q0VA 2PFVA 4JNNA 4V2GA 5IOYA 3NI7A 1UI5A 2QWTA 2O7OA 2GENA 1SGMA 2B1EA 3Q0UA 2R7UA 2HKUA 4ME9A 2R7SA 1JT6A 3BR3A 1UI6A 3ZQHA 3NNRA 3S5RA 3LSPA 2VKVA 4ABZA 4OD4A 1QVUA 2QKOA 3VOKA 5GPCA 3LWJA 2REKA 5F27A 2IU5A 3FK7A 4AUXA 2QCOA 4W1UA 3VTIA 2R7VA 5IP6A 3LJLA 3O8HA 2W53A 4MK6A 3B6AA 1RKWA 2NS8A 3QPSA 5GP9A 2VPRA 3ZQGA 4D5FA 2ID3A 3BRUA 2IAIA 2DTZA 3G1LA 4XK4A 5EZHA 2UXIA 2ZB9A 3CRJA 4V2FA 3BJBA 5F1JA 2HQ5A 2A2FX 3FRQA 4GCLA 3BTCA 3SWHA 5FKOA 2GBYA 4KWAA 4DW6A 2HXOA 5CW8A 2YVXA 2X6OA 1JTYA 2WUIA 2QIBA 3G1OA 3IH3A 4AC6A 1RPWA 5HSZA 4AC0A 2UXOA 2RASA 3AQTA 3WHBA 1QPIA 5HBUA 2DG7A 3V78A 2ZY9A 4C2MA 3VOXA 1Z0XA 3FIWA 5FKLA 3ANGA 5FGLA 3NRGA 4X1EA 3K8PC 2HYJA 2XPVA 3DU5A 2RAEA 1T56A 4D7NA 1Z77A 1BJZA 3BTIA 3CWRA 2R7TA 4GFLA 2YVEA 3KNWA 5F0FA 3FK6A 3KZ9A 4JYKA 4ICHA 2V57A 3F0CA 3FHNA 2IBDA 5EYRA 2XGEA 2XRLA 2OPTA 2R7QA 3Q3SA 1JTXA 4U9LA 3LHQA 3B6CA 1JUPA 3VIBA 2UXUA 3O8GA 2XB5A 3DEWA 5DAJA 4U9NA 3VVZA 3BR1A 4M3EA 2XPWA 3C07A 5IPAA 3EUPA 5FKKA 1ZK8A 3GZIA 2ZOYA 5FHPA 3QBMA 3RD3A 2OF7A 3DU6A 5K7FA 3LOCA 4MXMA 3WHCA 5FKMA 2IEKA 3VW1A 4CGRA 3BT9A 1JT0A 4OD5A 4MO7A 3BR0A 2R7OA 2FBQA 3VW2A 4L62A 1ZKGA 3MNLA 2JJ7A 3BQYA 2PZ9A 5F0HA 4W97A 2I10A 1U9OA 3HE0A 2EH3A 3JSJA 5GPAA 2FD5A 3QKXA 3V6GA 1RKTA 2R7XA 3IH2A 3QQAA 2HYTA 2TRTA 2FQ4A 3CCYA 3LSJA 3ZQLA 5K7HA 5FMPA 3ON2A 4GCKA 4G12A 3F1BA 3VUQA 5CXGA 3NS4A 3NPIA 3Q0WA 3T6NA 3BTJA 3HTJA 2R7RA 3C2BA 5CXIA 5CQGA 5HAWA 2JK3A 3SFIA 2XGDA 3ZQFA 2G7SA 4M3DA 3TP0A 2ZCXA 3O60A 2YVHA 3KKDA 3NXCA 1JUSA 2DG8A 4NELA 3EGQA 2GFNA 3BNIA 5FKNA 3P9TA 3HTAA 4M3FA 3ZQIA
chains in the Genus database with same CATH topology
3NS4A 3SWHA 2B3WA 2R7RA 4C2MA 4DVYP 4OD4A 2R7XA 3KYLA 5CQGA 2R7TA 2R7WA 4OD5A 2PFVA 2R7OA 3FHNA 3VTIA 4IRVA 2R7VA 2A2FX 3K8PC 2R7QA 2B1EA 2FJI1 2R7UA 3DU5A 2R7SA 3DU6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NS4 A; 
#chains in the Genus database with same CATH topology
 5J1U A;  3HIM A;  4GFK A;  5K7Z A;  3KYL A;  3VPR A;  3VW0 A;  3HTH A;  2QOP A;  1QVT A;  4D7M A;  3PAS A;  2ZCN A;  2UXH A;  4ACI A;  3G1M A;  3DPJ A;  3PPB A;  2NP5 A;  1JUM A;  2WGB A;  3COL A;  4WIB A;  1U9N A;  3TP3 A;  2B3W A;  2F07 A;  2FX0 A;  3BCG A;  2FJ1 A;  4D5C A;  3BR2 A;  3CDL A;  2NX4 A;  3DCF A;  3ON4 A;  5F0C A;  3AQS A;  3RH2 A;  4JKZ A;  2HXI A;  3B81 A;  1ORK A;  5C4Y A;  4PXI A;  3SDG A;  3BTL A;  3GEU A;  5IOZ A;  4JL3 A;  2GUH A;  3HTI A;  4I6Z A;  3G56 A;  2VKE A;  2O7T A;  1VI0 A;  3BR6 A;  2XPU A;  4IRV A;  3BQZ A;  3KKC A;  3VVY A;  5AQC A;  2NS7 A;  2G0E A;  2RHA A;  3VP5 A;  3CJD A;  3LSR A;  2XDN A;  2OER A;  5D19 A;  2Y30 A;  1T33 A;  3IH4 A;  2ZCM A;  2TCT A;  3IUV A;  3QPL A;  3BHQ A;  2XGC A;  4M3G A;  2QTQ A;  2PBX A;  3HGG A;  3PM1 A;  4YZE A;  3BR5 A;  5H9T A;  4B1R A;  2NP3 A;  2Q24 A;  5J1Y A;  2R7W A;  4NN1 A;  2G7L A;  3E7Q A;  5D18 A;  5EFY A;  4M3B A;  5EZG A;  3HGY A;  2X9D A;  2UXP A;  4AF5 A;  1A6I A;  4GCT A;  4B3A A;  5K58 A;  2OI8 A;  2ID6 A;  5F04 A;  2G7G A;  5J3L A;  4HKU A;  4I76 A;  5D1R A;  5F08 A;  2WV1 A;  2G3B A;  3G7R A;  4UDS A;  2FJI 1;  3VVX A;  5J1R A;  2ZOZ A;  3ANP A;  3MVP A;  4DVY P;  2D6Y A;  2Y2Z A;  2Y31 A;  3Q0V A;  2PFV A;  4JNN A;  4V2G A;  5IOY A;  3NI7 A;  1UI5 A;  2QWT A;  2O7O A;  2GEN A;  1SGM A;  2B1E A;  3Q0U A;  2R7U A;  2HKU A;  4ME9 A;  2R7S A;  1JT6 A;  3BR3 A;  1UI6 A;  3ZQH A;  3NNR A;  3S5R A;  3LSP A;  2VKV A;  4ABZ A;  4OD4 A;  1QVU A;  2QKO A;  3VOK A;  5GPC A;  3LWJ A;  2REK A;  5F27 A;  2IU5 A;  3FK7 A;  4AUX A;  2QCO A;  4W1U A;  3VTI A;  2R7V A;  5IP6 A;  3LJL A;  3O8H A;  2W53 A;  4MK6 A;  3B6A A;  1RKW A;  2NS8 A;  3QPS A;  5GP9 A;  2VPR A;  3ZQG A;  4D5F A;  2ID3 A;  3BRU A;  2IAI A;  2DTZ A;  3G1L A;  4XK4 A;  5EZH A;  2UXI A;  2ZB9 A;  3CRJ A;  4V2F A;  3BJB A;  5F1J A;  2HQ5 A;  2A2F X;  3FRQ A;  4GCL A;  3BTC A;  3SWH A;  5FKO A;  2GBY A;  4KWA A;  4DW6 A;  2HXO A;  5CW8 A;  2YVX A;  2X6O A;  1JTY A;  2WUI A;  2QIB A;  3G1O A;  3IH3 A;  4AC6 A;  1RPW A;  5HSZ A;  4AC0 A;  2UXO A;  2RAS A;  3AQT A;  3WHB A;  1QPI A;  5HBU A;  2DG7 A;  3V78 A;  2ZY9 A;  4C2M A;  3VOX A;  1Z0X A;  3FIW A;  5FKL A;  3ANG A;  5FGL A;  3NRG A;  4X1E A;  3K8P C;  2HYJ A;  2XPV A;  3DU5 A;  2RAE A;  1T56 A;  4D7N A;  1Z77 A;  1BJZ A;  3BTI A;  3CWR A;  2R7T A;  4GFL A;  2YVE A;  3KNW A;  5F0F A;  3FK6 A;  3KZ9 A;  4JYK A;  4ICH A;  2V57 A;  3F0C A;  3FHN A;  2IBD A;  5EYR A;  2XGE A;  2XRL A;  2OPT A;  2R7Q A;  3Q3S A;  1JTX A;  4U9L A;  3LHQ A;  3B6C A;  1JUP A;  3VIB A;  2UXU A;  3O8G A;  2XB5 A;  3DEW A;  5DAJ A;  4U9N A;  3VVZ A;  3BR1 A;  4M3E A;  2XPW A;  3C07 A;  5IPA A;  3EUP A;  5FKK A;  1ZK8 A;  3GZI A;  2ZOY A;  5FHP A;  3QBM A;  3RD3 A;  2OF7 A;  3DU6 A;  5K7F A;  3LOC A;  4MXM A;  3WHC A;  5FKM A;  2IEK A;  3VW1 A;  4CGR A;  3BT9 A;  1JT0 A;  4OD5 A;  4MO7 A;  3BR0 A;  2R7O A;  2FBQ A;  3VW2 A;  4L62 A;  1ZKG A;  3MNL A;  2JJ7 A;  3BQY A;  2PZ9 A;  5F0H A;  4W97 A;  2I10 A;  1U9O A;  3HE0 A;  2EH3 A;  3JSJ A;  5GPA A;  2FD5 A;  3QKX A;  3V6G A;  1RKT A;  2R7X A;  3IH2 A;  3QQA A;  2HYT A;  2TRT A;  2FQ4 A;  3CCY A;  3LSJ A;  3ZQL A;  5K7H A;  5FMP A;  3ON2 A;  4GCK A;  4G12 A;  3F1B A;  3VUQ A;  5CXG A;  3NS4 A;  3NPI A;  3Q0W A;  3T6N A;  3BTJ A;  3HTJ A;  2R7R A;  3C2B A;  5CXI A;  5CQG A;  5HAW A;  2JK3 A;  3SFI A;  2XGD A;  3ZQF A;  2G7S A;  4M3D A;  3TP0 A;  2ZCX A;  3O60 A;  2YVH A;  3KKD A;  3NXC A;  1JUS A;  2DG8 A;  4NEL A;  3EGQ A;  2GFN A;  3BNI A;  5FKN A;  3P9T A;  3HTA A;  4M3F A;  3ZQI A; 
#chains in the Genus database with same CATH homology
 3NS4 A;  3SWH A;  2B3W A;  2R7R A;  4C2M A;  4DVY P;  4OD4 A;  2R7X A;  3KYL A;  5CQG A;  2R7T A;  2R7W A;  4OD5 A;  2PFV A;  2R7O A;  3FHN A;  3VTI A;  4IRV A;  2R7V A;  2A2F X;  3K8P C;  2R7Q A;  2B1E A;  2FJI 1;  2R7U A;  3DU5 A;  2R7S A;  3DU6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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