3NT8A

Crystal structure of na-asp-1
Total Genus 125
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
401
structure length
401
Chain Sequence
SFGCSNSGITDSDRQAFLDFHNNARRRVAKGLEDSNSGKLNPAKNMYKLSWDCAMEQQLQDAIQSCPSGFAGIQGVAQNTMSWSSSGGYPDPSVKIEPTLSGWWSGAKKNGVGPDNKYTGGGLFAFSNMVYSETTKLGCAYKVCGTKLAVSCIYNGVGYITNQPMWETGQACQTGADCSTYKNSGCEDGLCTKGPDVPETNQQCPSNTGMTDSVRDTFLSVHNEFRSSVARGLEPDALGGNAPKAAKMLKMVYDCEVEASAIRHGNKCVYQHSHGEDRPGLGENIYKTSVLKFDKNKAAKQASQLWWNELKEYGVGPSNVLTTALWNRPNMQIGHYTQMAWDTTYKLGCAVVFCNDFTFGVCQYGPGGNYMGHVIYTMGQPCSQCSPGATCSVTEGLCSAP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Immune system
molecule keywords Ancylostoma secreted protein 1
publication title Structure of a two-CAP-domain protein from the human hookworm parasite Necator americanus.
pubmed doi rcsb
source organism Necator americanus
total genus 125
structure length 401
sequence length 401
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-07-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00188 CAP Cysteine-rich secretory protein family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.33.10 Alpha Beta 3-Layer(aba) Sandwich Pathogenesis-related Protein p14a CAP 3nt8A02
3.40.33.10 Alpha Beta 3-Layer(aba) Sandwich Pathogenesis-related Protein p14a CAP 3nt8A01
3NT8A 4LY5A 4IFAA 3S6SA 4NUNA 4D53A 1U53A 4NUKA 4TPVA 1XX5A 4G2UA 1QNXA 3Q2UA 1RC9A 4H0AA 3S6VA 2DDAA 1WVRA 2DDBA 2EPFA 3Q2RA 4NUOA 3S6UA 3U3NC 3MZ8A 4AIWA 1XTAA 2VZNA 3U3LC 4P27A 1SMBA 3U3UC 2GIZA 4NUIA 5ETEA 1CFEA 5JYSA
chains in the Genus database with same CATH superfamily
3NT8A 4LY5A 4IFAA 3S6SA 4NUNA 4D53A 1U53A 4NUKA 4TPVA 1XX5A 4G2UA 1QNXA 3Q2UA 1RC9A 4H0AA 3S6VA 2DDAA 1WVRA 2DDBA 2EPFA 3Q2RA 4NUOA 3S6UA 3U3NC 3MZ8A 4AIWA 1XTAA 2VZNA 3U3LC 4P27A 1SMBA 3U3UC 2GIZA 4NUIA 5ETEA 1CFEA 5JYSA
chains in the Genus database with same CATH topology
3NT8A 4LY5A 4IFAA 3S6SA 4NUNA 4D53A 1U53A 4NUKA 4TPVA 1XX5A 4G2UA 1QNXA 3Q2UA 1RC9A 4H0AA 3S6VA 2DDAA 1WVRA 2DDBA 2EPFA 3Q2RA 4NUOA 3S6UA 3U3NC 3MZ8A 4AIWA 1XTAA 2VZNA 3U3LC 4P27A 1SMBA 3U3UC 2GIZA 4NUIA 5ETEA 1CFEA 5JYSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NT8 A;  4LY5 A;  4IFA A;  3S6S A;  4NUN A;  4D53 A;  1U53 A;  4NUK A;  4TPV A;  1XX5 A;  4G2U A;  1QNX A;  3Q2U A;  1RC9 A;  4H0A A;  3S6V A;  2DDA A;  1WVR A;  2DDB A;  2EPF A;  3Q2R A;  4NUO A;  3S6U A;  3U3N C;  3MZ8 A;  4AIW A;  1XTA A;  2VZN A;  3U3L C;  4P27 A;  1SMB A;  3U3U C;  2GIZ A;  4NUI A;  5ETE A;  1CFE A;  5JYS A; 
#chains in the Genus database with same CATH topology
 3NT8 A;  4LY5 A;  4IFA A;  3S6S A;  4NUN A;  4D53 A;  1U53 A;  4NUK A;  4TPV A;  1XX5 A;  4G2U A;  1QNX A;  3Q2U A;  1RC9 A;  4H0A A;  3S6V A;  2DDA A;  1WVR A;  2DDB A;  2EPF A;  3Q2R A;  4NUO A;  3S6U A;  3U3N C;  3MZ8 A;  4AIW A;  1XTA A;  2VZN A;  3U3L C;  4P27 A;  1SMB A;  3U3U C;  2GIZ A;  4NUI A;  5ETE A;  1CFE A;  5JYS A; 
#chains in the Genus database with same CATH homology
 3NT8 A;  4LY5 A;  4IFA A;  3S6S A;  4NUN A;  4D53 A;  1U53 A;  4NUK A;  4TPV A;  1XX5 A;  4G2U A;  1QNX A;  3Q2U A;  1RC9 A;  4H0A A;  3S6V A;  2DDA A;  1WVR A;  2DDB A;  2EPF A;  3Q2R A;  4NUO A;  3S6U A;  3U3N C;  3MZ8 A;  4AIW A;  1XTA A;  2VZN A;  3U3L C;  4P27 A;  1SMB A;  3U3U C;  2GIZ A;  4NUI A;  5ETE A;  1CFE A;  5JYS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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