3NTSA

Catalytic domain of vsdc from aeromonas hydrophila
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
199
structure length
185
Chain Sequence
SKADEALRYYSAQGYTLLNNYLRDRPYKQREAIDTLLSRSYLNDEPTSAGEFDKAMKAYVADVEAGLAKLPASPELSFVYRGLALDKPELAALKEQFTGVGNIVVEPGFMSTSPDKAWVNDTLLKIRLPAGHGGRLLGDAAEMLFPTQTRLRVDRVVSSTSGDFDTLLNTIPTSRIKRLIEVSVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Aeromonas hydrophila
publication title Biochemical characterization of an actin-targeting ADP ribosyltransferase from aeromonas hydrophila and the identification of a novel inhibitor for this toxin family
rcsb
molecule keywords VsdC
total genus 46
structure length 185
sequence length 199
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-07-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 3ntsA00
1GY0A 1PWQA 1J7NA 2J3VA 1JKYA 5GTTA 2C8GA 2C8BX 4H0YA 1ZXVA 1GXZA 1GZEA 2C8FE 2GWLA 4GF1A 4PKTA 4PKUA 4PKWA 4XM8A 3BUZA 1YQYA 1OJZA 4PKSA 1GXYA 2C89A 4XM6A 2C8AA 5D1UA 1QS1A 5D1SA 2BOVB 4H0XA 2J3ZA 2WN4A 4FK7A 4FMLA 3NTSA 1OJQA 2GWMA 2WN8A 2C8EE 5DZQA 3BW8A 2C8DA 1GZFA 4XSGB 2WN5A 2A9KB 4TR5A 2A78B 5BWMB 1R45A 2WN7A 1PWUA 4H0VA 4ELNA 5H03A 1QS2A 4PKVA 1R4BA 4FXQA 1OG1A 1OG4A 4H03A 1PWPA 5D1TA 2J3XA 4WF6A 2C8CA 3U0JA 4XM7A 1PWVA 4DV8A 4XSHB 2C8HA 4PKQA 4PKRA 1OG3A 1UZIA 1GIRA 1G24A 4H0TA 5H04A 1PWWA 1GIQA 2WN6A 4GY2A
chains in the Genus database with same CATH superfamily
1GY0A 1PWQA 1J7NA 2J3VA 1JKYA 5GTTA 2C8GA 2C8BX 4H0YA 1ZXVA 1GXZA 1GZEA 2C8FE 2GWLA 4GF1A 4PKTA 4PKUA 4PKWA 4XM8A 3BUZA 1YQYA 1OJZA 4PKSA 1GXYA 2C89A 4XM6A 2C8AA 5D1UA 1QS1A 5D1SA 2BOVB 4H0XA 2J3ZA 2WN4A 4FK7A 4FMLA 3NTSA 1OJQA 2GWMA 2WN8A 2C8EE 5DZQA 3BW8A 2C8DA 1GZFA 4XSGB 2WN5A 2A9KB 4TR5A 2A78B 5BWMB 1R45A 2WN7A 1PWUA 4H0VA 4ELNA 5H03A 1QS2A 4PKVA 1R4BA 4FXQA 1OG1A 1OG4A 4H03A 1PWPA 5D1TA 2J3XA 4WF6A 2C8CA 3U0JA 4XM7A 1PWVA 4DV8A 4XSHB 2C8HA 4PKQA 4PKRA 1OG3A 1UZIA 1GIRA 1G24A 4H0TA 5H04A 1PWWA 1GIQA 2WN6A 4GY2A
chains in the Genus database with same CATH topology
1GY0A 1PWQA 1J7NA 2J3VA 1JKYA 5GTTA 2C8GA 2C8BX 4H0YA 1ZXVA 1GXZA 1GZEA 2C8FE 2GWLA 4GF1A 4PKTA 4PKUA 4PKWA 4XM8A 3BUZA 1YQYA 1OJZA 4PKSA 1GXYA 2C89A 4XM6A 2C8AA 5D1UA 1QS1A 5D1SA 2BOVB 4H0XA 2J3ZA 2WN4A 4FK7A 4FMLA 3NTSA 1OJQA 2GWMA 2WN8A 2C8EE 5DZQA 3BW8A 2C8DA 1GZFA 4XSGB 2WN5A 2A9KB 4TR5A 2A78B 5BWMB 1R45A 2WN7A 1PWUA 4H0VA 4ELNA 5H03A 1QS2A 4PKVA 1R4BA 4FXQA 1OG1A 1OG4A 4H03A 1PWPA 5D1TA 2J3XA 4WF6A 2C8CA 3U0JA 4XM7A 1PWVA 4DV8A 4XSHB 2C8HA 4PKQA 4PKRA 1OG3A 1UZIA 1GIRA 1G24A 4H0TA 5H04A 1PWWA 1GIQA 2WN6A 4GY2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GY0 A;  1PWQ A;  1J7N A;  2J3V A;  1JKY A;  5GTT A;  2C8G A;  2C8B X;  4H0Y A;  1ZXV A;  1GXZ A;  1GZE A;  2C8F E;  2GWL A;  4GF1 A;  4PKT A;  4PKU A;  4PKW A;  4XM8 A;  3BUZ A;  1YQY A;  1OJZ A;  4PKS A;  1GXY A;  2C89 A;  4XM6 A;  2C8A A;  5D1U A;  1QS1 A;  5D1S A;  2BOV B;  4H0X A;  2J3Z A;  2WN4 A;  4FK7 A;  4FML A;  3NTS A;  1OJQ A;  2GWM A;  2WN8 A;  2C8E E;  5DZQ A;  3BW8 A;  2C8D A;  1GZF A;  4XSG B;  2WN5 A;  2A9K B;  4TR5 A;  2A78 B;  5BWM B;  1R45 A;  2WN7 A;  1PWU A;  4H0V A;  4ELN A;  5H03 A;  1QS2 A;  4PKV A;  1R4B A;  4FXQ A;  1OG1 A;  1OG4 A;  4H03 A;  1PWP A;  5D1T A;  2J3X A;  4WF6 A;  2C8C A;  3U0J A;  4XM7 A;  1PWV A;  4DV8 A;  4XSH B;  2C8H A;  4PKQ A;  4PKR A;  1OG3 A;  1UZI A;  1GIR A;  1G24 A;  4H0T A;  5H04 A;  1PWW A;  1GIQ A;  2WN6 A;  4GY2 A; 
#chains in the Genus database with same CATH topology
 1GY0 A;  1PWQ A;  1J7N A;  2J3V A;  1JKY A;  5GTT A;  2C8G A;  2C8B X;  4H0Y A;  1ZXV A;  1GXZ A;  1GZE A;  2C8F E;  2GWL A;  4GF1 A;  4PKT A;  4PKU A;  4PKW A;  4XM8 A;  3BUZ A;  1YQY A;  1OJZ A;  4PKS A;  1GXY A;  2C89 A;  4XM6 A;  2C8A A;  5D1U A;  1QS1 A;  5D1S A;  2BOV B;  4H0X A;  2J3Z A;  2WN4 A;  4FK7 A;  4FML A;  3NTS A;  1OJQ A;  2GWM A;  2WN8 A;  2C8E E;  5DZQ A;  3BW8 A;  2C8D A;  1GZF A;  4XSG B;  2WN5 A;  2A9K B;  4TR5 A;  2A78 B;  5BWM B;  1R45 A;  2WN7 A;  1PWU A;  4H0V A;  4ELN A;  5H03 A;  1QS2 A;  4PKV A;  1R4B A;  4FXQ A;  1OG1 A;  1OG4 A;  4H03 A;  1PWP A;  5D1T A;  2J3X A;  4WF6 A;  2C8C A;  3U0J A;  4XM7 A;  1PWV A;  4DV8 A;  4XSH B;  2C8H A;  4PKQ A;  4PKR A;  1OG3 A;  1UZI A;  1GIR A;  1G24 A;  4H0T A;  5H04 A;  1PWW A;  1GIQ A;  2WN6 A;  4GY2 A; 
#chains in the Genus database with same CATH homology
 1GY0 A;  1PWQ A;  1J7N A;  2J3V A;  1JKY A;  5GTT A;  2C8G A;  2C8B X;  4H0Y A;  1ZXV A;  1GXZ A;  1GZE A;  2C8F E;  2GWL A;  4GF1 A;  4PKT A;  4PKU A;  4PKW A;  4XM8 A;  3BUZ A;  1YQY A;  1OJZ A;  4PKS A;  1GXY A;  2C89 A;  4XM6 A;  2C8A A;  5D1U A;  1QS1 A;  5D1S A;  2BOV B;  4H0X A;  2J3Z A;  2WN4 A;  4FK7 A;  4FML A;  3NTS A;  1OJQ A;  2GWM A;  2WN8 A;  2C8E E;  5DZQ A;  3BW8 A;  2C8D A;  1GZF A;  4XSG B;  2WN5 A;  2A9K B;  4TR5 A;  2A78 B;  5BWM B;  1R45 A;  2WN7 A;  1PWU A;  4H0V A;  4ELN A;  5H03 A;  1QS2 A;  4PKV A;  1R4B A;  4FXQ A;  1OG1 A;  1OG4 A;  4H03 A;  1PWP A;  5D1T A;  2J3X A;  4WF6 A;  2C8C A;  3U0J A;  4XM7 A;  1PWV A;  4DV8 A;  4XSH B;  2C8H A;  4PKQ A;  4PKR A;  1OG3 A;  1UZI A;  1GIR A;  1G24 A;  4H0T A;  5H04 A;  1PWW A;  1GIQ A;  2WN6 A;  4GY2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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