3NTSA

Catalytic domain of vsdc from aeromonas hydrophila
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
199
structure length
185
Chain Sequence
SKADEALRYYSAQGYTLLNNYLRDRPYKQREAIDTLLSRSYLNDEPTSAGEFDKAMKAYVADVEAGLAKLPASPELSFVYRGLALDKPELAALKEQFTGVGNIVVEPGFMSTSPDKAWVNDTLLKIRLPAGHGGRLLGDAAEMLFPTQTRLRVDRVVSSTSGDFDTLLNTIPTSRIKRLIEVSVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Biochemical characterization of an actin-targeting ADP ribosyltransferase from aeromonas hydrophila and the identification of a novel inhibitor for this toxin family
rcsb
molecule keywords VsdC
source organism Aeromonas hydrophila
molecule tags Transferase
total genus 46
structure length 185
sequence length 199
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-07-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 3ntsA00
2C8AA 1GXZA 4GF1A 5H04A 2J3VA 2C8DA 1GXYA 4H0VA 4XM7A 4TR5A 2C8CA 1OG4A 2C8EE 2WN4A 4WF6A 1R4BA 1QS2A 3BUZA 5D1UA 2GWMA 4FK7A 4GY2A 3U0JA 4PKRA 1PWUA 4PKWA 2A9KB 2C8BX 2C89A 1PWPA 1UZIA 4PKQA 1PWVA 5BWMB 1GZEA 2J3XA 2J3ZA 1J7NA 4PKSA 1GIQA 3BW8A 5H03A 1OG3A 4PKVA 4XM8A 2WN7A 5DZQA 2A78B 1GZFA 1OG1A 1R45A 1ZXVA 2GWLA 5D1TA 1GY0A 4H0XA 5D1SA 1G24A 2C8FE 2C8GA 4PKTA 4PKUA 4XSGB 4DV8A 1PWQA 1OJQA 1GIRA 4XSHB 5GTTA 4FMLA 2WN6A 4H0TA 4XM6A 4ELNA 2WN5A 4H0YA 4H03A 2C8HA 1QS1A 1YQYA 4FXQA 1OJZA 1PWWA 2BOVB 1JKYA 2WN8A 3NTSA
chains in the Genus database with same CATH superfamily
2C8AA 1GXZA 4GF1A 5H04A 2J3VA 2C8DA 1GXYA 4H0VA 4XM7A 4TR5A 2C8CA 1OG4A 2C8EE 2WN4A 4WF6A 1R4BA 1QS2A 3BUZA 5D1UA 2GWMA 4FK7A 4GY2A 3U0JA 4PKRA 1PWUA 4PKWA 2A9KB 2C8BX 2C89A 1PWPA 1UZIA 4PKQA 1PWVA 5BWMB 1GZEA 2J3XA 2J3ZA 1J7NA 4PKSA 1GIQA 3BW8A 5H03A 1OG3A 4PKVA 4XM8A 2WN7A 5DZQA 2A78B 1GZFA 1OG1A 1R45A 1ZXVA 2GWLA 5D1TA 1GY0A 4H0XA 5D1SA 1G24A 2C8FE 2C8GA 4PKTA 4PKUA 4XSGB 4DV8A 1PWQA 1OJQA 1GIRA 4XSHB 5GTTA 4FMLA 2WN6A 4H0TA 4XM6A 4ELNA 2WN5A 4H0YA 4H03A 2C8HA 1QS1A 1YQYA 4FXQA 1OJZA 1PWWA 2BOVB 1JKYA 2WN8A 3NTSA
chains in the Genus database with same CATH topology
2C8AA 1GXZA 4GF1A 5H04A 2J3VA 2C8DA 1GXYA 4H0VA 4XM7A 4TR5A 2C8CA 1OG4A 2C8EE 2WN4A 4WF6A 1R4BA 1QS2A 3BUZA 5D1UA 2GWMA 4FK7A 4GY2A 3U0JA 4PKRA 1PWUA 4PKWA 2A9KB 2C8BX 2C89A 1PWPA 1UZIA 4PKQA 1PWVA 5BWMB 1GZEA 2J3XA 2J3ZA 1J7NA 4PKSA 1GIQA 3BW8A 5H03A 1OG3A 4PKVA 4XM8A 2WN7A 5DZQA 2A78B 1GZFA 1OG1A 1R45A 1ZXVA 2GWLA 5D1TA 1GY0A 4H0XA 5D1SA 1G24A 2C8FE 2C8GA 4PKTA 4PKUA 4XSGB 4DV8A 1PWQA 1OJQA 1GIRA 4XSHB 5GTTA 4FMLA 2WN6A 4H0TA 4XM6A 4ELNA 2WN5A 4H0YA 4H03A 2C8HA 1QS1A 1YQYA 4FXQA 1OJZA 1PWWA 2BOVB 1JKYA 2WN8A 3NTSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2C8A A;  1GXZ A;  4GF1 A;  5H04 A;  2J3V A;  2C8D A;  1GXY A;  4H0V A;  4XM7 A;  4TR5 A;  2C8C A;  1OG4 A;  2C8E E;  2WN4 A;  4WF6 A;  1R4B A;  1QS2 A;  3BUZ A;  5D1U A;  2GWM A;  4FK7 A;  4GY2 A;  3U0J A;  4PKR A;  1PWU A;  4PKW A;  2A9K B;  2C8B X;  2C89 A;  1PWP A;  1UZI A;  4PKQ A;  1PWV A;  5BWM B;  1GZE A;  2J3X A;  2J3Z A;  1J7N A;  4PKS A;  1GIQ A;  3BW8 A;  5H03 A;  1OG3 A;  4PKV A;  4XM8 A;  2WN7 A;  5DZQ A;  2A78 B;  1GZF A;  1OG1 A;  1R45 A;  1ZXV A;  2GWL A;  5D1T A;  1GY0 A;  4H0X A;  5D1S A;  1G24 A;  2C8F E;  2C8G A;  4PKT A;  4PKU A;  4XSG B;  4DV8 A;  1PWQ A;  1OJQ A;  1GIR A;  4XSH B;  5GTT A;  4FML A;  2WN6 A;  4H0T A;  4XM6 A;  4ELN A;  2WN5 A;  4H0Y A;  4H03 A;  2C8H A;  1QS1 A;  1YQY A;  4FXQ A;  1OJZ A;  1PWW A;  2BOV B;  1JKY A;  2WN8 A;  3NTS A; 
#chains in the Genus database with same CATH topology
 2C8A A;  1GXZ A;  4GF1 A;  5H04 A;  2J3V A;  2C8D A;  1GXY A;  4H0V A;  4XM7 A;  4TR5 A;  2C8C A;  1OG4 A;  2C8E E;  2WN4 A;  4WF6 A;  1R4B A;  1QS2 A;  3BUZ A;  5D1U A;  2GWM A;  4FK7 A;  4GY2 A;  3U0J A;  4PKR A;  1PWU A;  4PKW A;  2A9K B;  2C8B X;  2C89 A;  1PWP A;  1UZI A;  4PKQ A;  1PWV A;  5BWM B;  1GZE A;  2J3X A;  2J3Z A;  1J7N A;  4PKS A;  1GIQ A;  3BW8 A;  5H03 A;  1OG3 A;  4PKV A;  4XM8 A;  2WN7 A;  5DZQ A;  2A78 B;  1GZF A;  1OG1 A;  1R45 A;  1ZXV A;  2GWL A;  5D1T A;  1GY0 A;  4H0X A;  5D1S A;  1G24 A;  2C8F E;  2C8G A;  4PKT A;  4PKU A;  4XSG B;  4DV8 A;  1PWQ A;  1OJQ A;  1GIR A;  4XSH B;  5GTT A;  4FML A;  2WN6 A;  4H0T A;  4XM6 A;  4ELN A;  2WN5 A;  4H0Y A;  4H03 A;  2C8H A;  1QS1 A;  1YQY A;  4FXQ A;  1OJZ A;  1PWW A;  2BOV B;  1JKY A;  2WN8 A;  3NTS A; 
#chains in the Genus database with same CATH homology
 2C8A A;  1GXZ A;  4GF1 A;  5H04 A;  2J3V A;  2C8D A;  1GXY A;  4H0V A;  4XM7 A;  4TR5 A;  2C8C A;  1OG4 A;  2C8E E;  2WN4 A;  4WF6 A;  1R4B A;  1QS2 A;  3BUZ A;  5D1U A;  2GWM A;  4FK7 A;  4GY2 A;  3U0J A;  4PKR A;  1PWU A;  4PKW A;  2A9K B;  2C8B X;  2C89 A;  1PWP A;  1UZI A;  4PKQ A;  1PWV A;  5BWM B;  1GZE A;  2J3X A;  2J3Z A;  1J7N A;  4PKS A;  1GIQ A;  3BW8 A;  5H03 A;  1OG3 A;  4PKV A;  4XM8 A;  2WN7 A;  5DZQ A;  2A78 B;  1GZF A;  1OG1 A;  1R45 A;  1ZXV A;  2GWL A;  5D1T A;  1GY0 A;  4H0X A;  5D1S A;  1G24 A;  2C8F E;  2C8G A;  4PKT A;  4PKU A;  4XSG B;  4DV8 A;  1PWQ A;  1OJQ A;  1GIR A;  4XSH B;  5GTT A;  4FML A;  2WN6 A;  4H0T A;  4XM6 A;  4ELN A;  2WN5 A;  4H0Y A;  4H03 A;  2C8H A;  1QS1 A;  1YQY A;  4FXQ A;  1OJZ A;  1PWW A;  2BOV B;  1JKY A;  2WN8 A;  3NTS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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