3NUFA

Crystal structure of a prd-containing transcription regulator (lsei_2718) from lactobacillus casei atcc 334 at 1.38 a resolution
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
118
structure length
118
Chain Sequence
MTPLDANVELPTEVKAMIEQSSDAQAATALVNYVIKLAAAAEIHFTDLQLQVLTNHLIEMLGRSKSGEQLPAVDPTMFAEVSQKSLDLADQVVQHIGHLEVAEKYVLSIHFEAAQDKI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription regulator
molecule keywords PRD-containing transcription regulator
publication title Crystal structure of a PRD-containing transcription regulator (LSEI_2718) from Lactobacillus casei ATCC 334 at 1.38 A resolution
rcsb
source organism Lactobacillus casei
total genus 37
structure length 118
sequence length 118
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-07-06
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1790.10 Mainly Alpha Orthogonal Bundle PTS-regulatory domain, PRD PRD domain 3nufA00
1TLVA 3RIOA 3NUFA 1H99A
chains in the Genus database with same CATH superfamily
3NUFA 3SQNA 1TLVA 3RIOA 1H99A
chains in the Genus database with same CATH topology
1TLVA 3RIOA 3NUFA 1H99A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TLV A;  3RIO A;  3NUF A;  1H99 A; 
#chains in the Genus database with same CATH topology
 3NUF A;  3SQN A;  1TLV A;  3RIO A;  1H99 A; 
#chains in the Genus database with same CATH homology
 1TLV A;  3RIO A;  3NUF A;  1H99 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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