3NUTA

Crystal structure of the methyltransferase cobj
Total Genus 66
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
sequence length
240
structure length
240
Chain Sequence
b'SGWVTVAGLGPGREDLVTPEVTAALAEATDIVGYIPYVARIAPREGLTLHPTDNRVELDRATHALEMAAEGRRVVVVSSGDPGVFAMASALFEALEAHPEHAGTEIRILPGITAMLAAAAAAGAPLGHDFCAINLSDNLKPFEILEKRLRHAARGDFAMAFYNPRSKSRPHQFTRVLEILREECEPGRLILFARAVTTPEQAISVVELRDATPEMADMRTVVLVGNAATRRVGPWVYTPR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Precorrin-3 methylase
publication title Crystal structure of the methyltransferase CobJ
rcsb
molecule tags Transferase
total genus 66
structure length 240
sequence length 240
chains with identical sequence B, C, D
ec nomenclature ec 2.1.1.-:
pdb deposition date 2010-07-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 3nutA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 3nutA01
3FFYA 2P5FA 2EHLA 2YBOA 1VA0A 2PB4A 1PJQA 2BB3A 2EMRA 2EK4A 1WDEA 2DSHA 2EK7A 2DV4A 2P2XA 2P6LA 4E16A 2HR8A 2DSGA 2E8QA 2EGLA 2EGBA 3NEIA 2P5CA 2EL0A 2Z6RA 2ED3A 3FQ6A 1PJTA 3NDCA 2E4RA 2EGSA 1PJSA 2OWFA 2DXXA 2OWUA 2HUXA 2E4NA 2E8HA 2CBFA 2DV3A 2ED5A 5HW4A 1VCEA 2EH4A 2E8SA 2E7RA 2DV5A 2DXVA 2EJKA 3KWPA 2PCMA 2PCIA 2P6KA 2DXWA 2EHCA 2PB6A 2P9DA 3HH1A 2OWKA 2ELEA 3I4TA 2E07A 2EMUA 2E15A 1S4DA 2E0KA 2EKAA 2EH2A 2EK3A 2DV7A 2EL2A 2PCKA 1VE2A 2EN5A 2YBQA 2HUTA 1V9AA 2ZVCA 2PB5A 2PCHA 1WNGA 2QBUA 2PCGA 2OWGA 2EJZA 2EL1A 2OWVA 2EH5A 2E08A 1CBFA 2ENIA 2EK2A 2E16A 2P6DA 3NUTA 2E0NA 2E8RA 2PCAA 2DEKA 2DSIA 2EEQA 2ZVBA 2P6IA 2ELDA 1WYZA 2HUQA 2EJJA 2E17A 3ND1A 2HUVA 2NPNA 1VHVA 2EL3A
chains in the Genus database with same CATH superfamily
3FFYA 2P5FA 2EHLA 3URKA 2YBOA 1VA0A 2PB4A 3SZUA 1PJQA 2BB3A 2EMRA 2EK4A 1WDEA 4MUXA 2DSHA 2EK7A 2DV4A 2P2XA 2P6LA 4E16A 2HR8A 2DSGA 2E8QA 3DNFA 3KEFA 2EGLA 2EGBA 4H4DA 3TIXB 3NEIA 2P5CA 2EL0A 2Z6RA 2ED3A 3FQ6A 1PJTA 3NDCA 2E4RA 4MUYA 2EGSA 1PJSA 3UTDA 2OWFA 2DXXA 2OWUA 2HUXA 2E4NA 2E8HA 2CBFA 2DV3A 2ED5A 5HW4A 3T0GA 3KE8A 1VCEA 2EH4A 2E8SA 2E7RA 2DV5A 2DXVA 2EJKA 3KWPA 2PCMA 2PCIA 3F7TA 3ZGNA 2P6KA 2DXWA 2EHCA 3SZOA 2PB6A 2P9DA 3UWMA 3ZGLA 3HH1A 4EB3A 2OWKA 2ELEA 2KYYA 3I4TA 2E07A 2EMUA 2E15A 1S4DA 2E0KA 2EKAA 2EH2A 3KELA 4H4CA 2EK3A 2DV7A 2EL2A 2PCKA 1VE2A 2EN5A 2YBQA 2HUTA 1V9AA 4MV5A 2ZVCA 2PB5A 2PCHA 3T0FA 3KE9A 1WNGA 2QBUA 2PCGA 3UV7A 2OWGA 2EJZA 3KEMA 3UV6A 2EL1A 2OWVA 2EH5A 2E08A 1CBFA 2ENIA 3UV3A 4H4EA 3UTCA 2EK2A 2E16A 2P6DA 3NUTA 2E0NA 2E8RA 2PCAA 2DEKA 2DSIA 2EEQA 2ZVBA 2P6IA 2ELDA 1WYZA 2HUQA 2EJJA 2E17A 4MV0A 3SZLA 3ND1A 2HUVA 4N7BA 3LMMA 2NPNA 1VHVA 2EL3A
chains in the Genus database with same CATH topology
3FFYA 2P5FA 2EHLA 3URKA 2YBOA 1VA0A 2PB4A 3SZUA 1PJQA 2BB3A 2EMRA 2EK4A 1WDEA 4MUXA 2DSHA 2EK7A 2DV4A 2P2XA 2P6LA 4E16A 2HR8A 2DSGA 2E8QA 3DNFA 3KEFA 2EGLA 2EGBA 4H4DA 3TIXB 3NEIA 2P5CA 2EL0A 2Z6RA 2ED3A 3FQ6A 1PJTA 3NDCA 2E4RA 4MUYA 2EGSA 1PJSA 3UTDA 2OWFA 2DXXA 2OWUA 2HUXA 2E4NA 2E8HA 2CBFA 2DV3A 2ED5A 5HW4A 3T0GA 3KE8A 1VCEA 2EH4A 2E8SA 2E7RA 2DV5A 2DXVA 2EJKA 3KWPA 2PCMA 2PCIA 3F7TA 3ZGNA 2P6KA 2DXWA 2EHCA 3SZOA 2PB6A 2P9DA 3UWMA 3ZGLA 3HH1A 4EB3A 2OWKA 2ELEA 2KYYA 3I4TA 2E07A 2EMUA 2E15A 1S4DA 2E0KA 2EKAA 2EH2A 3KELA 4H4CA 2EK3A 2DV7A 2EL2A 2PCKA 1VE2A 2EN5A 2YBQA 2HUTA 1V9AA 4MV5A 2ZVCA 2PB5A 2PCHA 3T0FA 3KE9A 1WNGA 2QBUA 2PCGA 3UV7A 2OWGA 2EJZA 3KEMA 3UV6A 2EL1A 2OWVA 2EH5A 2E08A 1CBFA 2ENIA 3UV3A 4H4EA 3UTCA 2EK2A 2E16A 2P6DA 3NUTA 2E0NA 2E8RA 2PCAA 2DEKA 2DSIA 2EEQA 2ZVBA 2P6IA 2ELDA 1WYZA 2HUQA 2EJJA 2E17A 4MV0A 3SZLA 3ND1A 2HUVA 4N7BA 3LMMA 2NPNA 1VHVA 2EL3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FFY A;  2P5F A;  2EHL A;  2YBO A;  1VA0 A;  2PB4 A;  1PJQ A;  2BB3 A;  2EMR A;  2EK4 A;  1WDE A;  2DSH A;  2EK7 A;  2DV4 A;  2P2X A;  2P6L A;  4E16 A;  2HR8 A;  2DSG A;  2E8Q A;  2EGL A;  2EGB A;  3NEI A;  2P5C A;  2EL0 A;  2Z6R A;  2ED3 A;  3FQ6 A;  1PJT A;  3NDC A;  2E4R A;  2EGS A;  1PJS A;  2OWF A;  2DXX A;  2OWU A;  2HUX A;  2E4N A;  2E8H A;  2CBF A;  2DV3 A;  2ED5 A;  5HW4 A;  1VCE A;  2EH4 A;  2E8S A;  2E7R A;  2DV5 A;  2DXV A;  2EJK A;  3KWP A;  2PCM A;  2PCI A;  2P6K A;  2DXW A;  2EHC A;  2PB6 A;  2P9D A;  3HH1 A;  2OWK A;  2ELE A;  3I4T A;  2E07 A;  2EMU A;  2E15 A;  1S4D A;  2E0K A;  2EKA A;  2EH2 A;  2EK3 A;  2DV7 A;  2EL2 A;  2PCK A;  1VE2 A;  2EN5 A;  2YBQ A;  2HUT A;  1V9A A;  2ZVC A;  2PB5 A;  2PCH A;  1WNG A;  2QBU A;  2PCG A;  2OWG A;  2EJZ A;  2EL1 A;  2OWV A;  2EH5 A;  2E08 A;  1CBF A;  2ENI A;  2EK2 A;  2E16 A;  2P6D A;  3NUT A;  2E0N A;  2E8R A;  2PCA A;  2DEK A;  2DSI A;  2EEQ A;  2ZVB A;  2P6I A;  2ELD A;  1WYZ A;  2HUQ A;  2EJJ A;  2E17 A;  3ND1 A;  2HUV A;  2NPN A;  1VHV A;  2EL3 A; 
#chains in the Genus database with same CATH topology
 3FFY A;  2P5F A;  2EHL A;  3URK A;  2YBO A;  1VA0 A;  2PB4 A;  3SZU A;  1PJQ A;  2BB3 A;  2EMR A;  2EK4 A;  1WDE A;  4MUX A;  2DSH A;  2EK7 A;  2DV4 A;  2P2X A;  2P6L A;  4E16 A;  2HR8 A;  2DSG A;  2E8Q A;  3DNF A;  3KEF A;  2EGL A;  2EGB A;  4H4D A;  3TIX B;  3NEI A;  2P5C A;  2EL0 A;  2Z6R A;  2ED3 A;  3FQ6 A;  1PJT A;  3NDC A;  2E4R A;  4MUY A;  2EGS A;  1PJS A;  3UTD A;  2OWF A;  2DXX A;  2OWU A;  2HUX A;  2E4N A;  2E8H A;  2CBF A;  2DV3 A;  2ED5 A;  5HW4 A;  3T0G A;  3KE8 A;  1VCE A;  2EH4 A;  2E8S A;  2E7R A;  2DV5 A;  2DXV A;  2EJK A;  3KWP A;  2PCM A;  2PCI A;  3F7T A;  3ZGN A;  2P6K A;  2DXW A;  2EHC A;  3SZO A;  2PB6 A;  2P9D A;  3UWM A;  3ZGL A;  3HH1 A;  4EB3 A;  2OWK A;  2ELE A;  2KYY A;  3I4T A;  2E07 A;  2EMU A;  2E15 A;  1S4D A;  2E0K A;  2EKA A;  2EH2 A;  3KEL A;  4H4C A;  2EK3 A;  2DV7 A;  2EL2 A;  2PCK A;  1VE2 A;  2EN5 A;  2YBQ A;  2HUT A;  1V9A A;  4MV5 A;  2ZVC A;  2PB5 A;  2PCH A;  3T0F A;  3KE9 A;  1WNG A;  2QBU A;  2PCG A;  3UV7 A;  2OWG A;  2EJZ A;  3KEM A;  3UV6 A;  2EL1 A;  2OWV A;  2EH5 A;  2E08 A;  1CBF A;  2ENI A;  3UV3 A;  4H4E A;  3UTC A;  2EK2 A;  2E16 A;  2P6D A;  3NUT A;  2E0N A;  2E8R A;  2PCA A;  2DEK A;  2DSI A;  2EEQ A;  2ZVB A;  2P6I A;  2ELD A;  1WYZ A;  2HUQ A;  2EJJ A;  2E17 A;  4MV0 A;  3SZL A;  3ND1 A;  2HUV A;  4N7B A;  3LMM A;  2NPN A;  1VHV A;  2EL3 A; 
#chains in the Genus database with same CATH homology
 3FFY A;  2P5F A;  2EHL A;  3URK A;  2YBO A;  1VA0 A;  2PB4 A;  3SZU A;  1PJQ A;  2BB3 A;  2EMR A;  2EK4 A;  1WDE A;  4MUX A;  2DSH A;  2EK7 A;  2DV4 A;  2P2X A;  2P6L A;  4E16 A;  2HR8 A;  2DSG A;  2E8Q A;  3DNF A;  3KEF A;  2EGL A;  2EGB A;  4H4D A;  3TIX B;  3NEI A;  2P5C A;  2EL0 A;  2Z6R A;  2ED3 A;  3FQ6 A;  1PJT A;  3NDC A;  2E4R A;  4MUY A;  2EGS A;  1PJS A;  3UTD A;  2OWF A;  2DXX A;  2OWU A;  2HUX A;  2E4N A;  2E8H A;  2CBF A;  2DV3 A;  2ED5 A;  5HW4 A;  3T0G A;  3KE8 A;  1VCE A;  2EH4 A;  2E8S A;  2E7R A;  2DV5 A;  2DXV A;  2EJK A;  3KWP A;  2PCM A;  2PCI A;  3F7T A;  3ZGN A;  2P6K A;  2DXW A;  2EHC A;  3SZO A;  2PB6 A;  2P9D A;  3UWM A;  3ZGL A;  3HH1 A;  4EB3 A;  2OWK A;  2ELE A;  2KYY A;  3I4T A;  2E07 A;  2EMU A;  2E15 A;  1S4D A;  2E0K A;  2EKA A;  2EH2 A;  3KEL A;  4H4C A;  2EK3 A;  2DV7 A;  2EL2 A;  2PCK A;  1VE2 A;  2EN5 A;  2YBQ A;  2HUT A;  1V9A A;  4MV5 A;  2ZVC A;  2PB5 A;  2PCH A;  3T0F A;  3KE9 A;  1WNG A;  2QBU A;  2PCG A;  3UV7 A;  2OWG A;  2EJZ A;  3KEM A;  3UV6 A;  2EL1 A;  2OWV A;  2EH5 A;  2E08 A;  1CBF A;  2ENI A;  3UV3 A;  4H4E A;  3UTC A;  2EK2 A;  2E16 A;  2P6D A;  3NUT A;  2E0N A;  2E8R A;  2PCA A;  2DEK A;  2DSI A;  2EEQ A;  2ZVB A;  2P6I A;  2ELD A;  1WYZ A;  2HUQ A;  2EJJ A;  2E17 A;  4MV0 A;  3SZL A;  3ND1 A;  2HUV A;  4N7B A;  3LMM A;  2NPN A;  1VHV A;  2EL3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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