3NUTA

Crystal structure of the methyltransferase cobj
Total Genus 66
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
sequence length
240
structure length
240
Chain Sequence
SGWVTVAGLGPGREDLVTPEVTAALAEATDIVGYIPYVARIAPREGLTLHPTDNRVELDRATHALEMAAEGRRVVVVSSGDPGVFAMASALFEALEAHPEHAGTEIRILPGITAMLAAAAAAGAPLGHDFCAINLSDNLKPFEILEKRLRHAARGDFAMAFYNPRSKSRPHQFTRVLEILREECEPGRLILFARAVTTPEQAISVVELRDATPEMADMRTVVLVGNAATRRVGPWVYTPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of the methyltransferase CobJ
rcsb
molecule tags Transferase
molecule keywords Precorrin-3 methylase
total genus 66
structure length 240
sequence length 240
chains with identical sequence B, C, D
ec nomenclature ec 2.1.1.-:
pdb deposition date 2010-07-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 3nutA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 3nutA01
2OWFA 2HUQA 2PCAA 3I4TA 2HUTA 2EHLA 2HR8A 2NPNA 2HUVA 3NDCA 1CBFA 2ELEA 2E8QA 2EJZA 3HH1A 2PCGA 2EK4A 2P6KA 2EL2A 2ELDA 2E8RA 2DV5A 5HW4A 2P2XA 2OWGA 2EL0A 2DXXA 2E0KA 2EH4A 2EK7A 2EKAA 2P6DA 2YBQA 2DV4A 2PCKA 2OWUA 1VE2A 2ZVBA 2EN5A 2E8SA 2DSIA 2E4NA 2OWVA 2E16A 1PJQA 1V9AA 1WNGA 3NEIA 1VCEA 2EJKA 2EL1A 2P6LA 2DXVA 2QBUA 2ZVCA 2CBFA 2E7RA 3ND1A 2E15A 1PJTA 4E16A 1WYZA 2DXWA 2ED5A 3KWPA 3NUTA 1S4DA 2EMRA 2EHCA 2DV7A 2PB4A 2OWKA 2EL3A 2E8HA 2DEKA 2PCMA 3FFYA 2HUXA 2P5FA 1VA0A 2EMUA 2P5CA 2BB3A 2EJJA 2DV3A 2EGLA 2ENIA 2DSHA 2E0NA 2P9DA 2PB5A 2E17A 2PB6A 1WDEA 3FQ6A 2EGBA 2E08A 2EGSA 2PCIA 2EH5A 2ED3A 2DSGA 2EH2A 2EEQA 1PJSA 1VHVA 2Z6RA 2EK2A 2PCHA 2E07A 2YBOA 2P6IA 2EK3A 2E4RA
chains in the Genus database with same CATH superfamily
2OWFA 2HUQA 2PCAA 3I4TA 2HUTA 4MV5A 3URKA 2EHLA 2HR8A 2NPNA 2HUVA 3SZUA 3T0GA 3F7TA 3NDCA 1CBFA 2ELEA 2E8QA 4N7BA 2EJZA 3HH1A 2PCGA 2EK4A 2P6KA 3ZGLA 2EL2A 2ELDA 2E8RA 2DV5A 5HW4A 2P2XA 2OWGA 2EL0A 2DXXA 2E0KA 2EH4A 2EK7A 2EKAA 3LMMA 3UWMA 2P6DA 2YBQA 2DV4A 4MUXA 2PCKA 3ZGNA 2OWUA 1VE2A 2ZVBA 2EN5A 2E8SA 2DSIA 2E4NA 2OWVA 2E16A 1PJQA 1V9AA 1WNGA 3NEIA 1VCEA 2EJKA 2EL1A 2P6LA 3UTCA 3SZOA 2DXVA 2QBUA 2ZVCA 2CBFA 2E7RA 3UV7A 3ND1A 2E15A 1PJTA 3TIXB 4E16A 1WYZA 3UV3A 2DXWA 2ED5A 3KWPA 3NUTA 1S4DA 2EMRA 2EHCA 2DV7A 2PB4A 2OWKA 2EL3A 2E8HA 2DEKA 2PCMA 3FFYA 3KE8A 3KEFA 2HUXA 2P5FA 1VA0A 3KE9A 2EMUA 2P5CA 3UTDA 4H4DA 2BB3A 2EJJA 2DV3A 2EGLA 2ENIA 2DSHA 2E0NA 2P9DA 2PB5A 2E17A 2PB6A 1WDEA 3KEMA 3DNFA 4H4EA 3FQ6A 2KYYA 2EGBA 3UV6A 2E08A 2EGSA 2PCIA 3T0FA 2EH5A 3SZLA 2ED3A 2DSGA 2EH2A 2EEQA 1PJSA 1VHVA 2Z6RA 2EK2A 2PCHA 3KELA 4MV0A 2E07A 2YBOA 4H4CA 2P6IA 4MUYA 4EB3A 2EK3A 2E4RA
chains in the Genus database with same CATH topology
2OWFA 2HUQA 2PCAA 3I4TA 2HUTA 4MV5A 3URKA 2EHLA 2HR8A 2NPNA 2HUVA 3SZUA 3T0GA 3F7TA 3NDCA 1CBFA 2ELEA 2E8QA 4N7BA 2EJZA 3HH1A 2PCGA 2EK4A 2P6KA 3ZGLA 2EL2A 2ELDA 2E8RA 2DV5A 5HW4A 2P2XA 2OWGA 2EL0A 2DXXA 2E0KA 2EH4A 2EK7A 2EKAA 3LMMA 3UWMA 2P6DA 2YBQA 2DV4A 4MUXA 2PCKA 3ZGNA 2OWUA 1VE2A 2ZVBA 2EN5A 2E8SA 2DSIA 2E4NA 2OWVA 2E16A 1PJQA 1V9AA 1WNGA 3NEIA 1VCEA 2EJKA 2EL1A 2P6LA 3UTCA 3SZOA 2DXVA 2QBUA 2ZVCA 2CBFA 2E7RA 3UV7A 3ND1A 2E15A 1PJTA 3TIXB 4E16A 1WYZA 3UV3A 2DXWA 2ED5A 3KWPA 3NUTA 1S4DA 2EMRA 2EHCA 2DV7A 2PB4A 2OWKA 2EL3A 2E8HA 2DEKA 2PCMA 3FFYA 3KE8A 3KEFA 2HUXA 2P5FA 1VA0A 3KE9A 2EMUA 2P5CA 3UTDA 4H4DA 2BB3A 2EJJA 2DV3A 2EGLA 2ENIA 2DSHA 2E0NA 2P9DA 2PB5A 2E17A 2PB6A 1WDEA 3KEMA 3DNFA 4H4EA 3FQ6A 2KYYA 2EGBA 3UV6A 2E08A 2EGSA 2PCIA 3T0FA 2EH5A 3SZLA 2ED3A 2DSGA 2EH2A 2EEQA 1PJSA 1VHVA 2Z6RA 2EK2A 2PCHA 3KELA 4MV0A 2E07A 2YBOA 4H4CA 2P6IA 4MUYA 4EB3A 2EK3A 2E4RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OWF A;  2HUQ A;  2PCA A;  3I4T A;  2HUT A;  2EHL A;  2HR8 A;  2NPN A;  2HUV A;  3NDC A;  1CBF A;  2ELE A;  2E8Q A;  2EJZ A;  3HH1 A;  2PCG A;  2EK4 A;  2P6K A;  2EL2 A;  2ELD A;  2E8R A;  2DV5 A;  5HW4 A;  2P2X A;  2OWG A;  2EL0 A;  2DXX A;  2E0K A;  2EH4 A;  2EK7 A;  2EKA A;  2P6D A;  2YBQ A;  2DV4 A;  2PCK A;  2OWU A;  1VE2 A;  2ZVB A;  2EN5 A;  2E8S A;  2DSI A;  2E4N A;  2OWV A;  2E16 A;  1PJQ A;  1V9A A;  1WNG A;  3NEI A;  1VCE A;  2EJK A;  2EL1 A;  2P6L A;  2DXV A;  2QBU A;  2ZVC A;  2CBF A;  2E7R A;  3ND1 A;  2E15 A;  1PJT A;  4E16 A;  1WYZ A;  2DXW A;  2ED5 A;  3KWP A;  3NUT A;  1S4D A;  2EMR A;  2EHC A;  2DV7 A;  2PB4 A;  2OWK A;  2EL3 A;  2E8H A;  2DEK A;  2PCM A;  3FFY A;  2HUX A;  2P5F A;  1VA0 A;  2EMU A;  2P5C A;  2BB3 A;  2EJJ A;  2DV3 A;  2EGL A;  2ENI A;  2DSH A;  2E0N A;  2P9D A;  2PB5 A;  2E17 A;  2PB6 A;  1WDE A;  3FQ6 A;  2EGB A;  2E08 A;  2EGS A;  2PCI A;  2EH5 A;  2ED3 A;  2DSG A;  2EH2 A;  2EEQ A;  1PJS A;  1VHV A;  2Z6R A;  2EK2 A;  2PCH A;  2E07 A;  2YBO A;  2P6I A;  2EK3 A;  2E4R A; 
#chains in the Genus database with same CATH topology
 2OWF A;  2HUQ A;  2PCA A;  3I4T A;  2HUT A;  4MV5 A;  3URK A;  2EHL A;  2HR8 A;  2NPN A;  2HUV A;  3SZU A;  3T0G A;  3F7T A;  3NDC A;  1CBF A;  2ELE A;  2E8Q A;  4N7B A;  2EJZ A;  3HH1 A;  2PCG A;  2EK4 A;  2P6K A;  3ZGL A;  2EL2 A;  2ELD A;  2E8R A;  2DV5 A;  5HW4 A;  2P2X A;  2OWG A;  2EL0 A;  2DXX A;  2E0K A;  2EH4 A;  2EK7 A;  2EKA A;  3LMM A;  3UWM A;  2P6D A;  2YBQ A;  2DV4 A;  4MUX A;  2PCK A;  3ZGN A;  2OWU A;  1VE2 A;  2ZVB A;  2EN5 A;  2E8S A;  2DSI A;  2E4N A;  2OWV A;  2E16 A;  1PJQ A;  1V9A A;  1WNG A;  3NEI A;  1VCE A;  2EJK A;  2EL1 A;  2P6L A;  3UTC A;  3SZO A;  2DXV A;  2QBU A;  2ZVC A;  2CBF A;  2E7R A;  3UV7 A;  3ND1 A;  2E15 A;  1PJT A;  3TIX B;  4E16 A;  1WYZ A;  3UV3 A;  2DXW A;  2ED5 A;  3KWP A;  3NUT A;  1S4D A;  2EMR A;  2EHC A;  2DV7 A;  2PB4 A;  2OWK A;  2EL3 A;  2E8H A;  2DEK A;  2PCM A;  3FFY A;  3KE8 A;  3KEF A;  2HUX A;  2P5F A;  1VA0 A;  3KE9 A;  2EMU A;  2P5C A;  3UTD A;  4H4D A;  2BB3 A;  2EJJ A;  2DV3 A;  2EGL A;  2ENI A;  2DSH A;  2E0N A;  2P9D A;  2PB5 A;  2E17 A;  2PB6 A;  1WDE A;  3KEM A;  3DNF A;  4H4E A;  3FQ6 A;  2KYY A;  2EGB A;  3UV6 A;  2E08 A;  2EGS A;  2PCI A;  3T0F A;  2EH5 A;  3SZL A;  2ED3 A;  2DSG A;  2EH2 A;  2EEQ A;  1PJS A;  1VHV A;  2Z6R A;  2EK2 A;  2PCH A;  3KEL A;  4MV0 A;  2E07 A;  2YBO A;  4H4C A;  2P6I A;  4MUY A;  4EB3 A;  2EK3 A;  2E4R A; 
#chains in the Genus database with same CATH homology
 2OWF A;  2HUQ A;  2PCA A;  3I4T A;  2HUT A;  4MV5 A;  3URK A;  2EHL A;  2HR8 A;  2NPN A;  2HUV A;  3SZU A;  3T0G A;  3F7T A;  3NDC A;  1CBF A;  2ELE A;  2E8Q A;  4N7B A;  2EJZ A;  3HH1 A;  2PCG A;  2EK4 A;  2P6K A;  3ZGL A;  2EL2 A;  2ELD A;  2E8R A;  2DV5 A;  5HW4 A;  2P2X A;  2OWG A;  2EL0 A;  2DXX A;  2E0K A;  2EH4 A;  2EK7 A;  2EKA A;  3LMM A;  3UWM A;  2P6D A;  2YBQ A;  2DV4 A;  4MUX A;  2PCK A;  3ZGN A;  2OWU A;  1VE2 A;  2ZVB A;  2EN5 A;  2E8S A;  2DSI A;  2E4N A;  2OWV A;  2E16 A;  1PJQ A;  1V9A A;  1WNG A;  3NEI A;  1VCE A;  2EJK A;  2EL1 A;  2P6L A;  3UTC A;  3SZO A;  2DXV A;  2QBU A;  2ZVC A;  2CBF A;  2E7R A;  3UV7 A;  3ND1 A;  2E15 A;  1PJT A;  3TIX B;  4E16 A;  1WYZ A;  3UV3 A;  2DXW A;  2ED5 A;  3KWP A;  3NUT A;  1S4D A;  2EMR A;  2EHC A;  2DV7 A;  2PB4 A;  2OWK A;  2EL3 A;  2E8H A;  2DEK A;  2PCM A;  3FFY A;  3KE8 A;  3KEF A;  2HUX A;  2P5F A;  1VA0 A;  3KE9 A;  2EMU A;  2P5C A;  3UTD A;  4H4D A;  2BB3 A;  2EJJ A;  2DV3 A;  2EGL A;  2ENI A;  2DSH A;  2E0N A;  2P9D A;  2PB5 A;  2E17 A;  2PB6 A;  1WDE A;  3KEM A;  3DNF A;  4H4E A;  3FQ6 A;  2KYY A;  2EGB A;  3UV6 A;  2E08 A;  2EGS A;  2PCI A;  3T0F A;  2EH5 A;  3SZL A;  2ED3 A;  2DSG A;  2EH2 A;  2EEQ A;  1PJS A;  1VHV A;  2Z6R A;  2EK2 A;  2PCH A;  3KEL A;  4MV0 A;  2E07 A;  2YBO A;  4H4C A;  2P6I A;  4MUY A;  4EB3 A;  2EK3 A;  2E4R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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