3NUTA

Crystal structure of the methyltransferase cobj
Total Genus 66
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
sequence length
240
structure length
240
Chain Sequence
SGWVTVAGLGPGREDLVTPEVTAALAEATDIVGYIPYVARIAPREGLTLHPTDNRVELDRATHALEMAAEGRRVVVVSSGDPGVFAMASALFEALEAHPEHAGTEIRILPGITAMLAAAAAAGAPLGHDFCAINLSDNLKPFEILEKRLRHAARGDFAMAFYNPRSKSRPHQFTRVLEILREECEPGRLILFARAVTTPEQAISVVELRDATPEMADMRTVVLVGNAATRRVGPWVYTPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of the methyltransferase CobJ
rcsb
molecule tags Transferase
molecule keywords Precorrin-3 methylase
total genus 66
structure length 240
sequence length 240
chains with identical sequence B, C, D
ec nomenclature ec 2.1.1.-:
pdb deposition date 2010-07-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 3nutA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 3nutA01
2E0NA 2DXVA 2E7RA 1WDEA 2EH4A 2CBFA 2PB6A 3ND1A 1WNGA 2PB4A 2PCHA 2P9DA 2EKAA 2E15A 1S4DA 2EK2A 2PCIA 2NPNA 2OWFA 2ENIA 2E07A 2PCMA 2EHCA 2EGLA 2ED3A 2EK7A 2DV3A 2EJZA 4E16A 2EMUA 2E4RA 1CBFA 2P6KA 1VCEA 2HUQA 2ELEA 2ZVCA 3I4TA 2EHLA 2P6IA 2E08A 2E4NA 2EGBA 2P6DA 2DXWA 3NUTA 2EL2A 2EJJA 2DV5A 2HUVA 2YBOA 2ZVBA 2PCGA 2EL3A 3NEIA 2E8SA 2PB5A 2DV4A 3FFYA 1PJQA 2EH5A 2EK3A 2ELDA 2Z6RA 3KWPA 2P6LA 2BB3A 2EL1A 1VA0A 2EH2A 1VHVA 2EK4A 1PJSA 2ED5A 3NDCA 2EGSA 5HW4A 2DSGA 2P5CA 2OWGA 2OWKA 2E8QA 2YBQA 2OWUA 2P2XA 1PJTA 2E0KA 2QBUA 2E8HA 2EEQA 2EMRA 2DSHA 2DSIA 2PCAA 2E17A 1VE2A 2EL0A 2HR8A 2HUTA 1V9AA 3FQ6A 2PCKA 2DXXA 2DV7A 2DEKA 2OWVA 3HH1A 2E8RA 2EJKA 2E16A 2EN5A 2HUXA 2P5FA 1WYZA
chains in the Genus database with same CATH superfamily
2E0NA 3TIXB 2DXVA 2E7RA 1WDEA 2EH4A 2CBFA 2PB6A 3SZUA 4MV0A 3UTCA 3ND1A 3UWMA 1WNGA 4MUXA 2PB4A 2PCHA 3ZGLA 2P9DA 2EKAA 2E15A 3DNFA 1S4DA 2EK2A 2PCIA 2NPNA 2OWFA 2ENIA 2E07A 2PCMA 2EHCA 2EGLA 2ED3A 3UV3A 2EK7A 2DV3A 2EJZA 4E16A 2EMUA 2E4RA 1CBFA 3ZGNA 3KE9A 2P6KA 1VCEA 2HUQA 2ELEA 2ZVCA 3I4TA 2EHLA 3SZLA 2P6IA 2E08A 2E4NA 2KYYA 2EGBA 2P6DA 2DXWA 3NUTA 2EL2A 2EJJA 2DV5A 2HUVA 2YBOA 2ZVBA 2PCGA 2EL3A 4N7BA 3NEIA 3LMMA 3KEMA 2E8SA 2PB5A 2DV4A 3FFYA 3T0FA 1PJQA 3KE8A 2EH5A 2EK3A 2ELDA 2Z6RA 3KWPA 2P6LA 2BB3A 4H4DA 4H4CA 2EL1A 1VA0A 2EH2A 1VHVA 2EK4A 3KEFA 1PJSA 2ED5A 3NDCA 2EGSA 5HW4A 2DSGA 2P5CA 2OWGA 2OWKA 2E8QA 2YBQA 2OWUA 2P2XA 4MUYA 1PJTA 2E0KA 2QBUA 2E8HA 2EEQA 2EMRA 3T0GA 2DSHA 3UV6A 2DSIA 3URKA 2PCAA 2E17A 3KELA 1VE2A 4MV5A 2EL0A 4H4EA 2HR8A 2HUTA 3UTDA 3SZOA 3F7TA 1V9AA 3FQ6A 2PCKA 2DXXA 2DV7A 2DEKA 2OWVA 3HH1A 2E8RA 2EJKA 3UV7A 2E16A 2EN5A 2HUXA 4EB3A 2P5FA 1WYZA
chains in the Genus database with same CATH topology
2E0NA 3TIXB 2DXVA 2E7RA 1WDEA 2EH4A 2CBFA 2PB6A 3SZUA 4MV0A 3UTCA 3ND1A 3UWMA 1WNGA 4MUXA 2PB4A 2PCHA 3ZGLA 2P9DA 2EKAA 2E15A 3DNFA 1S4DA 2EK2A 2PCIA 2NPNA 2OWFA 2ENIA 2E07A 2PCMA 2EHCA 2EGLA 2ED3A 3UV3A 2EK7A 2DV3A 2EJZA 4E16A 2EMUA 2E4RA 1CBFA 3ZGNA 3KE9A 2P6KA 1VCEA 2HUQA 2ELEA 2ZVCA 3I4TA 2EHLA 3SZLA 2P6IA 2E08A 2E4NA 2KYYA 2EGBA 2P6DA 2DXWA 3NUTA 2EL2A 2EJJA 2DV5A 2HUVA 2YBOA 2ZVBA 2PCGA 2EL3A 4N7BA 3NEIA 3LMMA 3KEMA 2E8SA 2PB5A 2DV4A 3FFYA 3T0FA 1PJQA 3KE8A 2EH5A 2EK3A 2ELDA 2Z6RA 3KWPA 2P6LA 2BB3A 4H4DA 4H4CA 2EL1A 1VA0A 2EH2A 1VHVA 2EK4A 3KEFA 1PJSA 2ED5A 3NDCA 2EGSA 5HW4A 2DSGA 2P5CA 2OWGA 2OWKA 2E8QA 2YBQA 2OWUA 2P2XA 4MUYA 1PJTA 2E0KA 2QBUA 2E8HA 2EEQA 2EMRA 3T0GA 2DSHA 3UV6A 2DSIA 3URKA 2PCAA 2E17A 3KELA 1VE2A 4MV5A 2EL0A 4H4EA 2HR8A 2HUTA 3UTDA 3SZOA 3F7TA 1V9AA 3FQ6A 2PCKA 2DXXA 2DV7A 2DEKA 2OWVA 3HH1A 2E8RA 2EJKA 3UV7A 2E16A 2EN5A 2HUXA 4EB3A 2P5FA 1WYZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E0N A;  2DXV A;  2E7R A;  1WDE A;  2EH4 A;  2CBF A;  2PB6 A;  3ND1 A;  1WNG A;  2PB4 A;  2PCH A;  2P9D A;  2EKA A;  2E15 A;  1S4D A;  2EK2 A;  2PCI A;  2NPN A;  2OWF A;  2ENI A;  2E07 A;  2PCM A;  2EHC A;  2EGL A;  2ED3 A;  2EK7 A;  2DV3 A;  2EJZ A;  4E16 A;  2EMU A;  2E4R A;  1CBF A;  2P6K A;  1VCE A;  2HUQ A;  2ELE A;  2ZVC A;  3I4T A;  2EHL A;  2P6I A;  2E08 A;  2E4N A;  2EGB A;  2P6D A;  2DXW A;  3NUT A;  2EL2 A;  2EJJ A;  2DV5 A;  2HUV A;  2YBO A;  2ZVB A;  2PCG A;  2EL3 A;  3NEI A;  2E8S A;  2PB5 A;  2DV4 A;  3FFY A;  1PJQ A;  2EH5 A;  2EK3 A;  2ELD A;  2Z6R A;  3KWP A;  2P6L A;  2BB3 A;  2EL1 A;  1VA0 A;  2EH2 A;  1VHV A;  2EK4 A;  1PJS A;  2ED5 A;  3NDC A;  2EGS A;  5HW4 A;  2DSG A;  2P5C A;  2OWG A;  2OWK A;  2E8Q A;  2YBQ A;  2OWU A;  2P2X A;  1PJT A;  2E0K A;  2QBU A;  2E8H A;  2EEQ A;  2EMR A;  2DSH A;  2DSI A;  2PCA A;  2E17 A;  1VE2 A;  2EL0 A;  2HR8 A;  2HUT A;  1V9A A;  3FQ6 A;  2PCK A;  2DXX A;  2DV7 A;  2DEK A;  2OWV A;  3HH1 A;  2E8R A;  2EJK A;  2E16 A;  2EN5 A;  2HUX A;  2P5F A;  1WYZ A; 
#chains in the Genus database with same CATH topology
 2E0N A;  3TIX B;  2DXV A;  2E7R A;  1WDE A;  2EH4 A;  2CBF A;  2PB6 A;  3SZU A;  4MV0 A;  3UTC A;  3ND1 A;  3UWM A;  1WNG A;  4MUX A;  2PB4 A;  2PCH A;  3ZGL A;  2P9D A;  2EKA A;  2E15 A;  3DNF A;  1S4D A;  2EK2 A;  2PCI A;  2NPN A;  2OWF A;  2ENI A;  2E07 A;  2PCM A;  2EHC A;  2EGL A;  2ED3 A;  3UV3 A;  2EK7 A;  2DV3 A;  2EJZ A;  4E16 A;  2EMU A;  2E4R A;  1CBF A;  3ZGN A;  3KE9 A;  2P6K A;  1VCE A;  2HUQ A;  2ELE A;  2ZVC A;  3I4T A;  2EHL A;  3SZL A;  2P6I A;  2E08 A;  2E4N A;  2KYY A;  2EGB A;  2P6D A;  2DXW A;  3NUT A;  2EL2 A;  2EJJ A;  2DV5 A;  2HUV A;  2YBO A;  2ZVB A;  2PCG A;  2EL3 A;  4N7B A;  3NEI A;  3LMM A;  3KEM A;  2E8S A;  2PB5 A;  2DV4 A;  3FFY A;  3T0F A;  1PJQ A;  3KE8 A;  2EH5 A;  2EK3 A;  2ELD A;  2Z6R A;  3KWP A;  2P6L A;  2BB3 A;  4H4D A;  4H4C A;  2EL1 A;  1VA0 A;  2EH2 A;  1VHV A;  2EK4 A;  3KEF A;  1PJS A;  2ED5 A;  3NDC A;  2EGS A;  5HW4 A;  2DSG A;  2P5C A;  2OWG A;  2OWK A;  2E8Q A;  2YBQ A;  2OWU A;  2P2X A;  4MUY A;  1PJT A;  2E0K A;  2QBU A;  2E8H A;  2EEQ A;  2EMR A;  3T0G A;  2DSH A;  3UV6 A;  2DSI A;  3URK A;  2PCA A;  2E17 A;  3KEL A;  1VE2 A;  4MV5 A;  2EL0 A;  4H4E A;  2HR8 A;  2HUT A;  3UTD A;  3SZO A;  3F7T A;  1V9A A;  3FQ6 A;  2PCK A;  2DXX A;  2DV7 A;  2DEK A;  2OWV A;  3HH1 A;  2E8R A;  2EJK A;  3UV7 A;  2E16 A;  2EN5 A;  2HUX A;  4EB3 A;  2P5F A;  1WYZ A; 
#chains in the Genus database with same CATH homology
 2E0N A;  3TIX B;  2DXV A;  2E7R A;  1WDE A;  2EH4 A;  2CBF A;  2PB6 A;  3SZU A;  4MV0 A;  3UTC A;  3ND1 A;  3UWM A;  1WNG A;  4MUX A;  2PB4 A;  2PCH A;  3ZGL A;  2P9D A;  2EKA A;  2E15 A;  3DNF A;  1S4D A;  2EK2 A;  2PCI A;  2NPN A;  2OWF A;  2ENI A;  2E07 A;  2PCM A;  2EHC A;  2EGL A;  2ED3 A;  3UV3 A;  2EK7 A;  2DV3 A;  2EJZ A;  4E16 A;  2EMU A;  2E4R A;  1CBF A;  3ZGN A;  3KE9 A;  2P6K A;  1VCE A;  2HUQ A;  2ELE A;  2ZVC A;  3I4T A;  2EHL A;  3SZL A;  2P6I A;  2E08 A;  2E4N A;  2KYY A;  2EGB A;  2P6D A;  2DXW A;  3NUT A;  2EL2 A;  2EJJ A;  2DV5 A;  2HUV A;  2YBO A;  2ZVB A;  2PCG A;  2EL3 A;  4N7B A;  3NEI A;  3LMM A;  3KEM A;  2E8S A;  2PB5 A;  2DV4 A;  3FFY A;  3T0F A;  1PJQ A;  3KE8 A;  2EH5 A;  2EK3 A;  2ELD A;  2Z6R A;  3KWP A;  2P6L A;  2BB3 A;  4H4D A;  4H4C A;  2EL1 A;  1VA0 A;  2EH2 A;  1VHV A;  2EK4 A;  3KEF A;  1PJS A;  2ED5 A;  3NDC A;  2EGS A;  5HW4 A;  2DSG A;  2P5C A;  2OWG A;  2OWK A;  2E8Q A;  2YBQ A;  2OWU A;  2P2X A;  4MUY A;  1PJT A;  2E0K A;  2QBU A;  2E8H A;  2EEQ A;  2EMR A;  3T0G A;  2DSH A;  3UV6 A;  2DSI A;  3URK A;  2PCA A;  2E17 A;  3KEL A;  1VE2 A;  4MV5 A;  2EL0 A;  4H4E A;  2HR8 A;  2HUT A;  3UTD A;  3SZO A;  3F7T A;  1V9A A;  3FQ6 A;  2PCK A;  2DXX A;  2DV7 A;  2DEK A;  2OWV A;  3HH1 A;  2E8R A;  2EJK A;  3UV7 A;  2E16 A;  2EN5 A;  2HUX A;  4EB3 A;  2P5F A;  1WYZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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