3NVIA

Structure of n-terminal truncated nop56/58 bound with l7ae and box c/d rna
Total Genus 93
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
93
sequence length
247
structure length
247
Chain Sequence
QSGARDKMVIQAIEALDDVDKVINLLVARLREWYSLHFPELDELLPKHPQYVAFVKTVGHRDNINEEVLRELGLSEEKIKKILEAKEKTMGAWMDQTDIEVVRQLAEEIDRLYQLRKKLEDYIDRAMDDVAPNLKALVGAKLAARLISLAGGLRELAMMPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEYIAEELKKELEARIREIKEKY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase/rna
molecule keywords NOP5/NOP56 related protein
publication title Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle.
pubmed doi rcsb
source organism Pyrococcus furiosus
total genus 93
structure length 247
sequence length 247
chains with identical sequence C
ec nomenclature
pdb deposition date 2010-07-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01798 Nop snoRNA binding domain, fibrillarin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.90 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 3nviA02
3NMUA 5GIPA 2OZBB 3GQXA 4BY9C 3NVIA 1NT2B 3NVKA 3PLAA 2NNWA 3ICXA 3NVMA 5GIOA 3SIVB 3SIUB 3GQUA 5GINA
chains in the Genus database with same CATH superfamily
5ID9A 3V09A 1BKEA 1IJGA 4FJCB 4D7XA 2VUEA 4K2CA 4GG2A 2LQHA 2XSIA 2BXIA 4F5VA 3SIUB 3MHHB 2QMCA 1HK3A 2XVWA 4TQ0A 4ZBKA 3VQIA 1H5WA 2KBZA 2Z8IA 1VFIA 3GQUA 4TQ1A 3A75A 1VZSA 4GDXA 2GUTA 4PO0A 2QHBA 4BKEA 2BXHA 2NNWA 1E7EA 3FWBC 2BXPA 4OR0A 2YDFA 1MIWA 4N0FD 4W4UB 2I2ZA 4GDKB 4N3ZA 4ZBQA 3KJLA 1E78A 4IW2A 1TXUA 2AJEA 1H9ZA 3NVMA 1O9XA 4WA6B 2K0NA 5DQFA 1GNJA 3BPJA 4OT2A 2NQOA 4G01A 3MHSB 2EFCA 2I30A 4LB9A 3NVKA 3JQZA 1NT2B 4HGKA 3KIKA 1J7EA 5IIUA 2BXMA 1MUSA 1SB0A 1TF0A 4ZC6A 4EMXA 2EFHA 2LXTA 4K71A 2OZBB 2E0YA 3A73A 4G04A 4MBEC 2DYOA 1HK2A 4M70B 1E7HA 5GHKA 3M99C 2DBWA 4F5SA 1LOTA 5D7GA 5BPKA 2XVQA 3FWCC 1HK4A 4I9OA 1E7GA 4OTTA 2KWFA 4G03A 4NAWB 2BXAA 2VUFA 4BY9C 3H37A 4LUFA 1KW2A 4OTUA 3GA9L 3LU8A 4C31B 5GIPA 4ZCGA 3UIVA 4J2VA 1MA9A 4F5TA 1KDXA 4E99A 2V36A 4FK5B 2BXEA 1E7AA 1J78A 2BXDA 2VDBA 4ZUXV 1UORA 3PLAA 2BXFA 1E7FA 2EFDA 3CX9A 1MIVA 5IJEA 2Z8KA 4L9KA 1MUHA 2BXGA 2DYMA 4Z9OA 2LQIA 3TDLA 3NMUA 5IIXA 2BXCA 3H3AA 4DM0A 4LA0A 4DHXB 4N0UD 3LU7A 2XVVA 1GNIA 3WHQA 3W1SA 2OT3A 2BXQA 1E7BA 4LB2A 3B9LA 5GINA 2DBXA 5IFOA 2AGHB 3G9KD 5ID7A 3B9MA 4S1YA 1HK1A 4IW1A 1E7IA 4FIPB 1HA2A 1HK5A 2XW1A 3GQXA 5HOZA 2LXSA 2BXKA 2DBUA 3JRYA 5GIOA 2XVUA 1BJ5A 4Z69A 1MIYA 2BXOA 4JK4A 1LNSA 2JUHA 1BM0A 4L9QA 2LOQA 2BXNA 2EFEA 2XW0A 5IJFA 1JNBA 1FOUA 3V03A 2BXBA 3V08A 4HGMB 1MM8A 3ECPA 1E7CA 3LU6A 3WHRA 5IJ5A 1N5UA 5B5TA 4LUHA 2CKXA 2QM6A 2Z8JA 3ICXA 2XMOA 5DBYA 3SIVB 3FNMA 2BX8A 4F5UA 2E0XA 5IIHA 3NVIA 1KXPD 3SQJA 2BXLA 4L8UA 3WHSA 1AO6A 5FUOA 2DG5A 2ROHA 4GDLB 4ZBRA
chains in the Genus database with same CATH topology
5ID9A 3V09A 1BKEA 1IJGA 4FJCB 2VUEA 4K2CA 4GG2A 2XSIA 2BXIA 4F5VA 3SIUB 3MHHB 2QMCA 1HK3A 2XVWA 4TQ0A 4ZBKA 3VQIA 1H5WA 2KBZA 2Z8IA 1VFIA 3GQUA 4TQ1A 3A75A 1VZSA 4GDXA 4PO0A 2QHBA 4BKEA 2BXHA 2NNWA 1E7EA 3FWBC 2BXPA 4OR0A 2YDFA 1MIWA 4N0FD 4W4UB 2I2ZA 4GDKB 4N3ZA 4ZBQA 3KJLA 1E78A 4IW2A 1TXUA 2AJEA 1H9ZA 3NVMA 1O9XA 4WA6B 5DQFA 1GNJA 4OT2A 2NQOA 4G01A 3MHSB 2EFCA 2I30A 4LB9A 3NVKA 3JQZA 1NT2B 4HGKA 3KIKA 1J7EA 5IIUA 2BXMA 1TF0A 4ZC6A 4EMXA 2EFHA 4K71A 2OZBB 2E0YA 3A73A 4G04A 4MBEC 2DYOA 1HK2A 4M70B 1E7HA 5GHKA 3M99C 2DBWA 4F5SA 1LOTA 5D7GA 5BPKA 2XVQA 3FWCC 1HK4A 1E7GA 4OTTA 4NAWB 4G03A 4BY9C 2BXAA 2VUFA 3H37A 4LUFA 1KW2A 4OTUA 3GA9L 3LU8A 4C31B 5GIPA 4ZCGA 3UIVA 4J2VA 1MA9A 4F5TA 4E99A 2V36A 4FK5B 2BXEA 1E7AA 1J78A 2BXDA 2VDBA 4ZUXV 1UORA 3PLAA 2BXFA 1E7FA 2EFDA 3CX9A 1MIVA 5IJEA 2Z8KA 4L9KA 2BXGA 2DYMA 4Z9OA 3NMUA 3TDLA 5IIXA 2BXCA 3H3AA 4LA0A 4DHXB 4N0UD 3LU7A 2XVVA 1GNIA 3WHQA 3W1SA 2OT3A 2BXQA 1E7BA 4LB2A 3B9LA 5GINA 2DBXA 5IFOA 3G9KD 5ID7A 3B9MA 4S1YA 1HK1A 4IW1A 1E7IA 4FIPB 1HA2A 1HK5A 2XW1A 3GQXA 5HOZA 2BXKA 2DBUA 3JRYA 5GIOA 2XVUA 1BJ5A 4Z69A 1MIYA 2BXOA 4JK4A 1LNSA 2JUHA 1BM0A 4L9QA 2LOQA 2BXNA 2EFEA 2XW0A 5IJFA 1JNBA 1FOUA 3V03A 2BXBA 3V08A 4HGMB 1E7CA 3LU6A 3WHRA 5IJ5A 1N5UA 5B5TA 4LUHA 2CKXA 2QM6A 2Z8JA 3ICXA 2XMOA 5DBYA 3SIVB 3FNMA 2BX8A 4F5UA 2E0XA 5IIHA 3NVIA 1KXPD 3SQJA 2BXLA 4L8UA 3WHSA 1AO6A 5FUOA 2DG5A 2ROHA 4GDLB 4ZBRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NMU A;  5GIP A;  2OZB B;  3GQX A;  4BY9 C;  3NVI A;  1NT2 B;  3NVK A;  3PLA A;  2NNW A;  3ICX A;  3NVM A;  5GIO A;  3SIV B;  3SIU B;  3GQU A;  5GIN A; 
#chains in the Genus database with same CATH topology
 5ID9 A;  3V09 A;  1BKE A;  1IJG A;  4FJC B;  4D7X A;  2VUE A;  4K2C A;  4GG2 A;  2LQH A;  2XSI A;  2BXI A;  4F5V A;  3SIU B;  3MHH B;  2QMC A;  1HK3 A;  2XVW A;  4TQ0 A;  4ZBK A;  3VQI A;  1H5W A;  2KBZ A;  2Z8I A;  1VFI A;  3GQU A;  4TQ1 A;  3A75 A;  1VZS A;  4GDX A;  2GUT A;  4PO0 A;  2QHB A;  4BKE A;  2BXH A;  2NNW A;  1E7E A;  3FWB C;  2BXP A;  4OR0 A;  2YDF A;  1MIW A;  4N0F D;  4W4U B;  2I2Z A;  4GDK B;  4N3Z A;  4ZBQ A;  3KJL A;  1E78 A;  4IW2 A;  1TXU A;  2AJE A;  1H9Z A;  3NVM A;  1O9X A;  4WA6 B;  2K0N A;  5DQF A;  1GNJ A;  3BPJ A;  4OT2 A;  2NQO A;  4G01 A;  3MHS B;  2EFC A;  2I30 A;  4LB9 A;  3NVK A;  3JQZ A;  1NT2 B;  4HGK A;  3KIK A;  1J7E A;  5IIU A;  2BXM A;  1MUS A;  1SB0 A;  1TF0 A;  4ZC6 A;  4EMX A;  2EFH A;  2LXT A;  4K71 A;  2OZB B;  2E0Y A;  3A73 A;  4G04 A;  4MBE C;  2DYO A;  1HK2 A;  4M70 B;  1E7H A;  5GHK A;  3M99 C;  2DBW A;  4F5S A;  1LOT A;  5D7G A;  5BPK A;  2XVQ A;  3FWC C;  1HK4 A;  4I9O A;  1E7G A;  4OTT A;  2KWF A;  4G03 A;  4NAW B;  2BXA A;  2VUF A;  4BY9 C;  3H37 A;  4LUF A;  1KW2 A;  4OTU A;  3GA9 L;  3LU8 A;  4C31 B;  5GIP A;  4ZCG A;  3UIV A;  4J2V A;  1MA9 A;  4F5T A;  1KDX A;  4E99 A;  2V36 A;  4FK5 B;  2BXE A;  1E7A A;  1J78 A;  2BXD A;  2VDB A;  4ZUX V;  1UOR A;  3PLA A;  2BXF A;  1E7F A;  2EFD A;  3CX9 A;  1MIV A;  5IJE A;  2Z8K A;  4L9K A;  1MUH A;  2BXG A;  2DYM A;  4Z9O A;  2LQI A;  3TDL A;  3NMU A;  5IIX A;  2BXC A;  3H3A A;  4DM0 A;  4LA0 A;  4DHX B;  4N0U D;  3LU7 A;  2XVV A;  1GNI A;  3WHQ A;  3W1S A;  2OT3 A;  2BXQ A;  1E7B A;  4LB2 A;  3B9L A;  5GIN A;  2DBX A;  5IFO A;  2AGH B;  3G9K D;  5ID7 A;  3B9M A;  4S1Y A;  1HK1 A;  4IW1 A;  1E7I A;  4FIP B;  1HA2 A;  1HK5 A;  2XW1 A;  3GQX A;  5HOZ A;  2LXS A;  2BXK A;  2DBU A;  3JRY A;  5GIO A;  2XVU A;  1BJ5 A;  4Z69 A;  1MIY A;  2BXO A;  4JK4 A;  1LNS A;  2JUH A;  1BM0 A;  4L9Q A;  2LOQ A;  2BXN A;  2EFE A;  2XW0 A;  5IJF A;  1JNB A;  1FOU A;  3V03 A;  2BXB A;  3V08 A;  4HGM B;  1MM8 A;  3ECP A;  1E7C A;  3LU6 A;  3WHR A;  5IJ5 A;  1N5U A;  5B5T A;  4LUH A;  2CKX A;  2QM6 A;  2Z8J A;  3ICX A;  2XMO A;  5DBY A;  3SIV B;  3FNM A;  2BX8 A;  4F5U A;  2E0X A;  5IIH A;  3NVI A;  1KXP D;  3SQJ A;  2BXL A;  4L8U A;  3WHS A;  1AO6 A;  5FUO A;  2DG5 A;  2ROH A;  4GDL B;  4ZBR A; 
#chains in the Genus database with same CATH homology
 5ID9 A;  3V09 A;  1BKE A;  1IJG A;  4FJC B;  2VUE A;  4K2C A;  4GG2 A;  2XSI A;  2BXI A;  4F5V A;  3SIU B;  3MHH B;  2QMC A;  1HK3 A;  2XVW A;  4TQ0 A;  4ZBK A;  3VQI A;  1H5W A;  2KBZ A;  2Z8I A;  1VFI A;  3GQU A;  4TQ1 A;  3A75 A;  1VZS A;  4GDX A;  4PO0 A;  2QHB A;  4BKE A;  2BXH A;  2NNW A;  1E7E A;  3FWB C;  2BXP A;  4OR0 A;  2YDF A;  1MIW A;  4N0F D;  4W4U B;  2I2Z A;  4GDK B;  4N3Z A;  4ZBQ A;  3KJL A;  1E78 A;  4IW2 A;  1TXU A;  2AJE A;  1H9Z A;  3NVM A;  1O9X A;  4WA6 B;  5DQF A;  1GNJ A;  4OT2 A;  2NQO A;  4G01 A;  3MHS B;  2EFC A;  2I30 A;  4LB9 A;  3NVK A;  3JQZ A;  1NT2 B;  4HGK A;  3KIK A;  1J7E A;  5IIU A;  2BXM A;  1TF0 A;  4ZC6 A;  4EMX A;  2EFH A;  4K71 A;  2OZB B;  2E0Y A;  3A73 A;  4G04 A;  4MBE C;  2DYO A;  1HK2 A;  4M70 B;  1E7H A;  5GHK A;  3M99 C;  2DBW A;  4F5S A;  1LOT A;  5D7G A;  5BPK A;  2XVQ A;  3FWC C;  1HK4 A;  1E7G A;  4OTT A;  4NAW B;  4G03 A;  4BY9 C;  2BXA A;  2VUF A;  3H37 A;  4LUF A;  1KW2 A;  4OTU A;  3GA9 L;  3LU8 A;  4C31 B;  5GIP A;  4ZCG A;  3UIV A;  4J2V A;  1MA9 A;  4F5T A;  4E99 A;  2V36 A;  4FK5 B;  2BXE A;  1E7A A;  1J78 A;  2BXD A;  2VDB A;  4ZUX V;  1UOR A;  3PLA A;  2BXF A;  1E7F A;  2EFD A;  3CX9 A;  1MIV A;  5IJE A;  2Z8K A;  4L9K A;  2BXG A;  2DYM A;  4Z9O A;  3NMU A;  3TDL A;  5IIX A;  2BXC A;  3H3A A;  4LA0 A;  4DHX B;  4N0U D;  3LU7 A;  2XVV A;  1GNI A;  3WHQ A;  3W1S A;  2OT3 A;  2BXQ A;  1E7B A;  4LB2 A;  3B9L A;  5GIN A;  2DBX A;  5IFO A;  3G9K D;  5ID7 A;  3B9M A;  4S1Y A;  1HK1 A;  4IW1 A;  1E7I A;  4FIP B;  1HA2 A;  1HK5 A;  2XW1 A;  3GQX A;  5HOZ A;  2BXK A;  2DBU A;  3JRY A;  5GIO A;  2XVU A;  1BJ5 A;  4Z69 A;  1MIY A;  2BXO A;  4JK4 A;  1LNS A;  2JUH A;  1BM0 A;  4L9Q A;  2LOQ A;  2BXN A;  2EFE A;  2XW0 A;  5IJF A;  1JNB A;  1FOU A;  3V03 A;  2BXB A;  3V08 A;  4HGM B;  1E7C A;  3LU6 A;  3WHR A;  5IJ5 A;  1N5U A;  5B5T A;  4LUH A;  2CKX A;  2QM6 A;  2Z8J A;  3ICX A;  2XMO A;  5DBY A;  3SIV B;  3FNM A;  2BX8 A;  4F5U A;  2E0X A;  5IIH A;  3NVI A;  1KXP D;  3SQJ A;  2BXL A;  4L8U A;  3WHS A;  1AO6 A;  5FUO A;  2DG5 A;  2ROH A;  4GDL B;  4ZBR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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