3NY6A

Catalytic fragment of cholix toxin from vibrio cholerae in complex with inhibitor v30
Total Genus 54
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
205
structure length
198
Chain Sequence
HMAVITPQGVTNWTYQELEATHQALTREGYVFVGYHGTNHVAAQTIVNRIAPVNEEKWGGLYVATHAEVAHGYARIKEGTGEYGLPTRAERDARGVMLRVYIPRASLERFYRTNTPLENAEEHITQVIGHSLPLRNEAFTGPESAGGEDETVIGWDMAIHAVAIPSTIPGNAYEELAIDEEAVAKEQSISTKPPYKER
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase/transferase inhibitor
molecule keywords Cholix toxin
publication title Newly discovered and characterized antivirulence compounds inhibit bacterial mono-ADP-ribosyltransferase toxins.
pubmed doi rcsb
source organism Vibrio cholerae
total genus 54
structure length 198
sequence length 205
ec nomenclature ec 2.4.2.36: NAD(+)--diphthamide ADP-ribosyltransferase.
pdb deposition date 2010-07-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09009 Exotox-A_cataly Exotoxin A catalytic
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.175.10 Alpha Beta Alpha-Beta Complex Diphtheria Toxin; domain 1 Diphtheria Toxin, domain 1 3ny6A00
3KI0A 4OW6A 1XDTT 3KI5A 1DMAA 1ZM4B 4AE0A 3NY6A 3Q9OA 1IKPA 3KI4A 3KI6A 3KI7A 1IKQA 3B8HB 1TOXA 1ZM2B 3KI2A 2Q5TA 3ESSA 1DDTA 1SGKA 1XK9A 1ZM9B 1ZM3B 1AERA 3B78B 2Q6MA 3KI1A 4AE1A 1F0LA 1DTPA 3KI3A 5I82A 2ZITB 3B82B 1MDTA
chains in the Genus database with same CATH superfamily
3KI0A 4OW6A 1XDTT 3KI5A 1DMAA 1ZM4B 4AE0A 3NY6A 3Q9OA 1IKPA 3KI4A 3KI6A 3KI7A 1IKQA 3B8HB 1TOXA 1ZM2B 3KI2A 2Q5TA 3ESSA 1DDTA 1SGKA 1XK9A 1ZM9B 1ZM3B 1AERA 3B78B 2Q6MA 3KI1A 4AE1A 1F0LA 1DTPA 3KI3A 5I82A 2ZITB 3B82B 1MDTA
chains in the Genus database with same CATH topology
3KI0A 4OW6A 1XDTT 3KI5A 1DMAA 1ZM4B 4AE0A 3NY6A 3Q9OA 1IKPA 3KI4A 3KI6A 3KI7A 1IKQA 3B8HB 1TOXA 1ZM2B 3KI2A 2Q5TA 3ESSA 1DDTA 1SGKA 1XK9A 1ZM9B 1ZM3B 1AERA 3B78B 2Q6MA 3KI1A 4AE1A 1F0LA 1DTPA 3KI3A 5I82A 2ZITB 3B82B 1MDTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KI0 A;  4OW6 A;  1XDT T;  3KI5 A;  1DMA A;  1ZM4 B;  4AE0 A;  3NY6 A;  3Q9O A;  1IKP A;  3KI4 A;  3KI6 A;  3KI7 A;  1IKQ A;  3B8H B;  1TOX A;  1ZM2 B;  3KI2 A;  2Q5T A;  3ESS A;  1DDT A;  1SGK A;  1XK9 A;  1ZM9 B;  1ZM3 B;  1AER A;  3B78 B;  2Q6M A;  3KI1 A;  4AE1 A;  1F0L A;  1DTP A;  3KI3 A;  5I82 A;  2ZIT B;  3B82 B;  1MDT A; 
#chains in the Genus database with same CATH topology
 3KI0 A;  4OW6 A;  1XDT T;  3KI5 A;  1DMA A;  1ZM4 B;  4AE0 A;  3NY6 A;  3Q9O A;  1IKP A;  3KI4 A;  3KI6 A;  3KI7 A;  1IKQ A;  3B8H B;  1TOX A;  1ZM2 B;  3KI2 A;  2Q5T A;  3ESS A;  1DDT A;  1SGK A;  1XK9 A;  1ZM9 B;  1ZM3 B;  1AER A;  3B78 B;  2Q6M A;  3KI1 A;  4AE1 A;  1F0L A;  1DTP A;  3KI3 A;  5I82 A;  2ZIT B;  3B82 B;  1MDT A; 
#chains in the Genus database with same CATH homology
 3KI0 A;  4OW6 A;  1XDT T;  3KI5 A;  1DMA A;  1ZM4 B;  4AE0 A;  3NY6 A;  3Q9O A;  1IKP A;  3KI4 A;  3KI6 A;  3KI7 A;  1IKQ A;  3B8H B;  1TOX A;  1ZM2 B;  3KI2 A;  2Q5T A;  3ESS A;  1DDT A;  1SGK A;  1XK9 A;  1ZM9 B;  1ZM3 B;  1AER A;  3B78 B;  2Q6M A;  3KI1 A;  4AE1 A;  1F0L A;  1DTP A;  3KI3 A;  5I82 A;  2ZIT B;  3B82 B;  1MDT A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...