3NZLA

Crystal structure of the n-terminal domain of dna-binding protein satb1 from homo sapiens, northeast structural genomics consortium target hr4435b
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
73
structure length
73
Chain Sequence
HHSHMLPPEQWSHTTVRNALKDLLKDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEFGRWYKHFKKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords DNA-binding protein SATB1
publication title Crystal Structure of the N-terminal domain of DNA-binding protein SATB1 from Homo sapiens, Northeast Structural Genomics Consortium Target HR4435B (CASP Target)
rcsb
source organism Homo sapiens
total genus 21
structure length 73
sequence length 73
ec nomenclature
pdb deposition date 2010-07-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.70 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) 434 Repressor (Amino-terminal Domain) 3nzlA00
4Q2JA 2L1PA 3NZLA
chains in the Genus database with same CATH superfamily
2ICTA 2O38A 3ME5A 1UXCA 3GN5A 1QP0A 5A7LA 4X4EA 2EBYA 4O8BA 3A9ZA 1CJGA 4Z58A 3QFIA 2IVGA 3VWSA 1XWRA 1X2LA 1U2ZA 4OB4A 4I8TA 2PXTA 3A9XA 2IV1A 2LYLA 4X4DA 4I6RA 2IVBA 4WVLA 2O4AA 2PUGA 3SCHA 2XIUA 2VEOA 5K98B 2CROA 4I6UA 3LFPA 1LCDA 3ZHMA 2XXPA 5DTQA 3M9LA 2OFYA 1QQAA 2PUAA 3L1PA 3JXDL 1L1MA 3R1FA 1QPZA 1JH9A 2GRLA 4MCTA 2EF8A 2KEJA 3GUUA 3NZLA 1WIZA 4X4FA 3NROA 3F52A 4J1XA 3IVPA 2CSFA 4EK9A 2HCSA 2MQKA 2PUFA 3SR4A 3A9YA 2PXVA 3SX0A 4IWRA 2LCVA 2J7UA 3TFLA 4DE8A 3MEJA 4JQDA 3S8QA 2HINA 3GZCA 3DNVB 3TELA 1PNRA 4IVZA 3GN5B 2AUWA 3QWGA 2AXUA 2KPJA 2KEIA 2BNOA 1DWKA 1CQTA 3F51A 2JQEA 2BNMA 3QF3A 4PU4C 3ZHIA 2PUCA 1Y9QA 1PRVA 3KJXA 3QQ6A 1YSEA 2XI8A 5DRYA 1R69A 3MLFA 3OKZA 1NEQA 1ZVVA 3D1NI 4GQMA 3FYMA 2D5VA 3CLCA 2J7WA 2MEZA 1PERL 4YG7B 1NW3A 1WH8A 1ZZ8A 1ZS4A 4EKGA 2FFHA 1LCCA 1QQBA 4I6TA 1ZUGA 5GAHi 3R09A 2A6CA 5JUWA 2AXVA 2PXUA 1QP4A 1WH6A 2ODRD 3HZIB 4Z59A 1ZZ6A 3BDNA 1HQ1A 2XSDC 2PIJA 1MFQC 1NERA 3BS3A 1ZZ9A 4ER7A 3JXBC 1HF0A 3RZZA 4YARA 2PUDA 3JXCL 4X4HA 2L49A 2HSGA 2LLWA 4YBAA 4X4GA 1LMB3 2GZUA 2HCNA 1ZZ7A 1ZZCA 4ER5A 1ZAYA 2PXDA 2LYPA 2PXLA 1UXDA 2M4HA 1UTXA 2WIUB 4ER0A 3OWQA 3EUSA 3G5GA 4JCXA 4J1WA 4ER6A 4PU8A 4Y42A 2IVQA 3GZDC 2BNNA 4FN3A 1QP7A 2BJCA 3GBFA 1OCTC 5GAGi 4PU3C 3FMYA 3KZ3A 5DTRA 2FJRA 2HFZA 2PUBA 5DRTA 2XXAA 4Z5HA 4HRAA 2L8NA 3OQMA 2V3CC 2H8RA 1PRUA 4GHJA 1PRAA 3PE5A 2PXEA 3ZKCA 3NDBB 1JFSA 1AU7A 2YBDA 2EWTA 2PXFA 2WUSR 2PPXA 1JFTA 4ER3A 1BDHA 1EFAA 2LLVA 4IA8A 2B5AA 2R1JL 4JCYA 2AWIA 2PXQA 4OBMA 4NDWA 2LYJA 1O4XA 2LYSA 4Q2JA 5DT2A 2AW6A 3VK0A 4X4BA 2PXKA 1BDIA 2AXZA 2XXQA 4Z5DA 3ZPXA 2GRMA 3B7HA 3QOXA 3CROL 4X4IA 4YG1A 1S7EA 1LQCA 3TRBA 2PE5A 1WETA 1E3OC 3BD1A 1RIOA 1LLIA 3KXAA 1VPWA 1Y7YA 2LNMA 1X57A 3QYXA 1GT0C 2R63A 4EQZA 1RPEL 2JVLA 3TEPA 1QZXA 2JCGA 4MCXA 3O9XA 3DM5A 1ZPQA 1OSLA 4F8DA 1DW9A 3G0TA 2XCJA 1DULA 2XJ3A 3U3WA 2PXPA 3QOWA 2O49A 3CECA 3SCGA 3SCFA 1RZSA 4EKIA 3LQXA 2OR1L 2IU7A 1POUA 3NXHA 5DSXA 2PXBA 1JWLA 1ZZBA 2MXDA 2ICPA 2IUOA 4Z5CA 3LISA 1RZRD 4DE9A 1IC8A 3FYAA 2KZ8A 3OMTA 4FBIA 2L1PA 2KEKA 3UFDA 1B0NA 2LYRA 3GZDA 3OQNA 2LYKA 4X4CA 3UWPA 3G7DA 3F6WA 1ADRA 1RZRA 3OQOA 4YG4A 4EZIA 3H5TA 3OP9A 2LYQA 3KL4A 4PU7A 5DTMA 1R63A 2PUEA 1SQ8A 1QB2A 3PXPA
chains in the Genus database with same CATH topology
3R09A 3NXHA 5DSXA 4HRAA 3GZDA 4Q2JA 4EKIA 2J7UA 3TFLA 4ER5A 3ME5A 4DE8A 2MXDA 3GZDC 2LNMA 3UWPA 3MEJA 5DT2A 3GUUA 3NZLA 5DRYA 2M4HA 3GZCA 2VEOA 3G0TA 4ER7A 3OKZA 3A9ZA 3PE5A 4ER0A 2XXQA 4EQZA 3NROA 3QOWA 4WVLA 3TELA 3OWQA 3ZPXA 3QFIA 4DE9A 4ER3A 4EZIA 2J7WA 3VWSA 2XXPA 4EK9A 5JUWA 3QOXA 2LLVA 5DTRA 3TEPA 1NW3A 3M9LA 5DTQA 2HCSA 2HFZA 4ER6A 1U2ZA 4EKGA 5DTMA 3A9XA 5DRTA 2ODRD 3SR4A 3A9YA 2L1PA 2LLWA 3SX0A 2YBDA 4OBMA 2HCNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Q2J A;  2L1P A;  3NZL A; 
#chains in the Genus database with same CATH topology
 2ICT A;  2O38 A;  3ME5 A;  1UXC A;  3GN5 A;  1QP0 A;  5A7L A;  4X4E A;  2EBY A;  4O8B A;  3A9Z A;  1CJG A;  4Z58 A;  3QFI A;  2IVG A;  3VWS A;  1XWR A;  1X2L A;  1U2Z A;  4OB4 A;  4I8T A;  2PXT A;  3A9X A;  2IV1 A;  2LYL A;  4X4D A;  4I6R A;  2IVB A;  4WVL A;  2O4A A;  2PUG A;  3SCH A;  2XIU A;  2VEO A;  5K98 B;  2CRO A;  4I6U A;  3LFP A;  1LCD A;  3ZHM A;  2XXP A;  5DTQ A;  3M9L A;  2OFY A;  1QQA A;  2PUA A;  3L1P A;  3JXD L;  1L1M A;  3R1F A;  1QPZ A;  1JH9 A;  2GRL A;  4MCT A;  2EF8 A;  2KEJ A;  3GUU A;  3NZL A;  1WIZ A;  4X4F A;  3NRO A;  3F52 A;  4J1X A;  3IVP A;  2CSF A;  4EK9 A;  2HCS A;  2MQK A;  2PUF A;  3SR4 A;  3A9Y A;  2PXV A;  3SX0 A;  4IWR A;  2LCV A;  2J7U A;  3TFL A;  4DE8 A;  3MEJ A;  4JQD A;  3S8Q A;  2HIN A;  3GZC A;  3DNV B;  3TEL A;  1PNR A;  4IVZ A;  3GN5 B;  2AUW A;  3QWG A;  2AXU A;  2KPJ A;  2KEI A;  2BNO A;  1DWK A;  1CQT A;  3F51 A;  2JQE A;  2BNM A;  3QF3 A;  4PU4 C;  3ZHI A;  2PUC A;  1Y9Q A;  1PRV A;  3KJX A;  3QQ6 A;  1YSE A;  2XI8 A;  5DRY A;  1R69 A;  3MLF A;  3OKZ A;  1NEQ A;  1ZVV A;  3D1N I;  4GQM A;  3FYM A;  2D5V A;  3CLC A;  2J7W A;  2MEZ A;  1PER L;  4YG7 B;  1NW3 A;  1WH8 A;  1ZZ8 A;  1ZS4 A;  4EKG A;  2FFH A;  1LCC A;  1QQB A;  4I6T A;  1ZUG A;  5GAH i;  3R09 A;  2A6C A;  5JUW A;  2AXV A;  2PXU A;  1QP4 A;  1WH6 A;  2ODR D;  3HZI B;  4Z59 A;  1ZZ6 A;  3BDN A;  1HQ1 A;  2XSD C;  2PIJ A;  1MFQ C;  1NER A;  3BS3 A;  1ZZ9 A;  4ER7 A;  3JXB C;  1HF0 A;  3RZZ A;  4YAR A;  2PUD A;  3JXC L;  4X4H A;  2L49 A;  2HSG A;  2LLW A;  4YBA A;  4X4G A;  1LMB 3;  2GZU A;  2HCN A;  1ZZ7 A;  1ZZC A;  4ER5 A;  1ZAY A;  2PXD A;  2LYP A;  2PXL A;  1UXD A;  2M4H A;  1UTX A;  2WIU B;  4ER0 A;  3OWQ A;  3EUS A;  3G5G A;  4JCX A;  4J1W A;  4ER6 A;  4PU8 A;  4Y42 A;  2IVQ A;  3GZD C;  2BNN A;  4FN3 A;  1QP7 A;  2BJC A;  3GBF A;  1OCT C;  5GAG i;  4PU3 C;  3FMY A;  3KZ3 A;  5DTR A;  2FJR A;  2HFZ A;  2PUB A;  5DRT A;  2XXA A;  4Z5H A;  4HRA A;  2L8N A;  3OQM A;  2V3C C;  2H8R A;  1PRU A;  4GHJ A;  1PRA A;  3PE5 A;  2PXE A;  3ZKC A;  3NDB B;  1JFS A;  1AU7 A;  2YBD A;  2EWT A;  2PXF A;  2WUS R;  2PPX A;  1JFT A;  4ER3 A;  1BDH A;  1EFA A;  2LLV A;  4IA8 A;  2B5A A;  2R1J L;  4JCY A;  2AWI A;  2PXQ A;  4OBM A;  4NDW A;  2LYJ A;  1O4X A;  2LYS A;  4Q2J A;  5DT2 A;  2AW6 A;  3VK0 A;  4X4B A;  2PXK A;  1BDI A;  2AXZ A;  2XXQ A;  4Z5D A;  3ZPX A;  2GRM A;  3B7H A;  3QOX A;  3CRO L;  4X4I A;  4YG1 A;  1S7E A;  1LQC A;  3TRB A;  2PE5 A;  1WET A;  1E3O C;  3BD1 A;  1RIO A;  1LLI A;  3KXA A;  1VPW A;  1Y7Y A;  2LNM A;  1X57 A;  3QYX A;  1GT0 C;  2R63 A;  4EQZ A;  1RPE L;  2JVL A;  3TEP A;  1QZX A;  2JCG A;  4MCX A;  3O9X A;  3DM5 A;  1ZPQ A;  1OSL A;  4F8D A;  1DW9 A;  3G0T A;  2XCJ A;  1DUL A;  2XJ3 A;  3U3W A;  2PXP A;  3QOW A;  2O49 A;  3CEC A;  3SCG A;  3SCF A;  1RZS A;  4EKI A;  3LQX A;  2OR1 L;  2IU7 A;  1POU A;  3NXH A;  5DSX A;  2PXB A;  1JWL A;  1ZZB A;  2MXD A;  2ICP A;  2IUO A;  4Z5C A;  3LIS A;  1RZR D;  4DE9 A;  1IC8 A;  3FYA A;  2KZ8 A;  3OMT A;  4FBI A;  2L1P A;  2KEK A;  3UFD A;  1B0N A;  2LYR A;  3GZD A;  3OQN A;  2LYK A;  4X4C A;  3UWP A;  3G7D A;  3F6W A;  1ADR A;  1RZR A;  3OQO A;  4YG4 A;  4EZI A;  3H5T A;  3OP9 A;  2LYQ A;  3KL4 A;  4PU7 A;  5DTM A;  1R63 A;  2PUE A;  1SQ8 A;  1QB2 A;  3PXP A; 
#chains in the Genus database with same CATH homology
 3R09 A;  3NXH A;  5DSX A;  4HRA A;  3GZD A;  4Q2J A;  4EKI A;  2J7U A;  3TFL A;  4ER5 A;  3ME5 A;  4DE8 A;  2MXD A;  3GZD C;  2LNM A;  3UWP A;  3MEJ A;  5DT2 A;  3GUU A;  3NZL A;  5DRY A;  2M4H A;  3GZC A;  2VEO A;  3G0T A;  4ER7 A;  3OKZ A;  3A9Z A;  3PE5 A;  4ER0 A;  2XXQ A;  4EQZ A;  3NRO A;  3QOW A;  4WVL A;  3TEL A;  3OWQ A;  3ZPX A;  3QFI A;  4DE9 A;  4ER3 A;  4EZI A;  2J7W A;  3VWS A;  2XXP A;  4EK9 A;  5JUW A;  3QOX A;  2LLV A;  5DTR A;  3TEP A;  1NW3 A;  3M9L A;  5DTQ A;  2HCS A;  2HFZ A;  4ER6 A;  1U2Z A;  4EKG A;  5DTM A;  3A9X A;  5DRT A;  2ODR D;  3SR4 A;  3A9Y A;  2L1P A;  2LLW A;  3SX0 A;  2YBD A;  4OBM A;  2HCN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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