3O98A

Glutathionylspermidine synthetase/amidase c59a complex with adp and gsp
Total Genus 155
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
155
sequence length
609
structure length
599
Chain Sequence
APFGTLLGYAPGGVAIYSSDYSSDAVFRSYIDDEYMGHKWQAVEFARRFLFLNYGVVFTDVGMAWEIFSLRFLREVVNDNILPLQAFPNGSPRAPVAGALLIWDKGGEFKDTGHVAIITQLHGNKVRIAEQNVIHSPLPQGQQWTRELEMVVENGCYTLKDTFDDTTILGWMIQTEDTEYSLPQPEIAGELLKISGARLENKGQFDGKWLDEKDPLQNAYVQANGQVINQDPYHYYTITESAEQELIKATNELHLMYLHATDKVLKDDNLLALFDIPKILWPRLRLSWQRRRHHMITGRMDFCMDERGLKVYEYNADSASCHTEAGLILERWAEQGYKGNGFNPAEGLINELAGAWKHSRARPFVHIMQDKDIEENYHAQFMEQALHQAGFETRILRGLDELGWDAAGQLIDGEGRLVNCVWKTWAWETAFDQIREVREFAAVPIRTGHPQNEVRLIDVLLRPEVLVFEPLWTVIPGNKAILPILWSLFPHHRYLLDTDFTVNDELVKTGYAVKPIAGRCGSNIDLVSHHEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGDESLVIKKESDIEPLIVVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure and mechanism of Escherichia coli glutathionylspermidine amidase belonging to the family of cysteine; histidine-dependent amidohydrolases/peptidases
pubmed doi rcsb
molecule tags Ligase, hydrolase
source organism Escherichia coli
molecule keywords Bifunctional glutathionylspermidine synthetase/amidase
total genus 155
structure length 599
sequence length 609
chains with identical sequence B
ec nomenclature ec 3.5.1.78: Glutathionylspermidine amidase.
pdb deposition date 2010-08-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03738 GSP_synth Glutathionylspermidine synthase preATP-grasp
A PF05257 CHAP CHAP domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 3o98A01
4F0WA 4CGKA 4F4MA 2IOBA 2IO7A 4FDYA 4Q4NA 2K3AA 4OLKA 3O98A 4FGIA 4Q4GX 4CSHA 2VOBA 2IF6A 2K1GA 4CT3A 4FQBA 3S0QA 2IOAA 2VPSA 2VPMA 3KW0A 3NE0A 4Q4TA 2IO8A 3VPJA 3PVQA 4JXBA 4R0KA 3M1UA 3A30A 3PBIA 3A2YA 2FG0A 4F0VA 4EOBA 2LRJA 3PBCA 3A2ZA 3GT2A 4HZBA 3I86A 2XIVA 3NPFA 2EVRA 4FGDA 3VPIA 3H41A 4FQAA 4HPEA 4HZ9A 2IO9A 4EQ8A 4LJ1A 4FGEA 2HBWA 4EQAA
chains in the Genus database with same CATH superfamily
4F0WA 3EBQA 4CGKA 4F4MA 2IOBA 4JURA 2IO7A 4FDYA 4Q4NA 2K3AA 4OLKA 3O98A 4FGIA 4Q4GX 4CSHA 2VOBA 2IF6A 2K1GA 4CT3A 4FQBA 3S0QA 2IOAA 2VPSA 2VPMA 3KW0A 3NE0A 4Q4TA 2IO8A 3VPJA 3PVQA 4JXBA 4HFLA 4R0KA 3M1UA 3A30A 3PBIA 3A2YA 2FG0A 2IO9A 4F0VA 4EOBA 2LRJA 3PBCA 3A2ZA 4J30A 3GT2A 4HZBA 3I86A 4HFKA 2XIVA 3NPFA 2EVRA 4FGDA 4HFFA 3VPIA 4J32A 3H41A 4FQAA 4HPEA 4HZ9A 2WP7A 4EQ8A 4LJ1A 4FGEA 2HBWA 4EQAA
chains in the Genus database with same CATH topology
4F0WA 4CGKA 4F4MA 2IOBA 2IO7A 4FDYA 4Q4NA 2K3AA 4OLKA 3O98A 4FGIA 4Q4GX 4CSHA 2VOBA 2IF6A 2K1GA 4CT3A 4FQBA 3S0QA 2IOAA 2VPSA 2VPMA 3KW0A 3NE0A 4Q4TA 2IO8A 3VPJA 3PVQA 4JXBA 4R0KA 3M1UA 3A30A 3PBIA 3A2YA 2FG0A 4F0VA 4EOBA 2LRJA 3PBCA 3A2ZA 3GT2A 4HZBA 3I86A 2XIVA 3NPFA 2EVRA 4FGDA 3VPIA 3H41A 4FQAA 4HPEA 4HZ9A 2IO9A 4EQ8A 4LJ1A 4FGEA 2HBWA 4EQAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4F0W A;  4CGK A;  4F4M A;  2IOB A;  2IO7 A;  4FDY A;  4Q4N A;  2K3A A;  4OLK A;  3O98 A;  4FGI A;  4Q4G X;  4CSH A;  2VOB A;  2IF6 A;  2K1G A;  4CT3 A;  4FQB A;  3S0Q A;  2IOA A;  2VPS A;  2VPM A;  3KW0 A;  3NE0 A;  4Q4T A;  2IO8 A;  3VPJ A;  3PVQ A;  4JXB A;  4R0K A;  3M1U A;  3A30 A;  3PBI A;  3A2Y A;  2FG0 A;  4F0V A;  4EOB A;  2LRJ A;  3PBC A;  3A2Z A;  3GT2 A;  4HZB A;  3I86 A;  2XIV A;  3NPF A;  2EVR A;  4FGD A;  3VPI A;  3H41 A;  4FQA A;  4HPE A;  4HZ9 A;  2IO9 A;  4EQ8 A;  4LJ1 A;  4FGE A;  2HBW A;  4EQA A; 
#chains in the Genus database with same CATH topology
 4F0W A;  3EBQ A;  4CGK A;  4F4M A;  2IOB A;  4JUR A;  2IO7 A;  4FDY A;  4Q4N A;  2K3A A;  4OLK A;  3O98 A;  4FGI A;  4Q4G X;  4CSH A;  2VOB A;  2IF6 A;  2K1G A;  4CT3 A;  4FQB A;  3S0Q A;  2IOA A;  2VPS A;  2VPM A;  3KW0 A;  3NE0 A;  4Q4T A;  2IO8 A;  3VPJ A;  3PVQ A;  4JXB A;  4HFL A;  4R0K A;  3M1U A;  3A30 A;  3PBI A;  3A2Y A;  2FG0 A;  2IO9 A;  4F0V A;  4EOB A;  2LRJ A;  3PBC A;  3A2Z A;  4J30 A;  3GT2 A;  4HZB A;  3I86 A;  4HFK A;  2XIV A;  3NPF A;  2EVR A;  4FGD A;  4HFF A;  3VPI A;  4J32 A;  3H41 A;  4FQA A;  4HPE A;  4HZ9 A;  2WP7 A;  4EQ8 A;  4LJ1 A;  4FGE A;  2HBW A;  4EQA A; 
#chains in the Genus database with same CATH homology
 4F0W A;  4CGK A;  4F4M A;  2IOB A;  2IO7 A;  4FDY A;  4Q4N A;  2K3A A;  4OLK A;  3O98 A;  4FGI A;  4Q4G X;  4CSH A;  2VOB A;  2IF6 A;  2K1G A;  4CT3 A;  4FQB A;  3S0Q A;  2IOA A;  2VPS A;  2VPM A;  3KW0 A;  3NE0 A;  4Q4T A;  2IO8 A;  3VPJ A;  3PVQ A;  4JXB A;  4R0K A;  3M1U A;  3A30 A;  3PBI A;  3A2Y A;  2FG0 A;  4F0V A;  4EOB A;  2LRJ A;  3PBC A;  3A2Z A;  3GT2 A;  4HZB A;  3I86 A;  2XIV A;  3NPF A;  2EVR A;  4FGD A;  3VPI A;  3H41 A;  4FQA A;  4HPE A;  4HZ9 A;  2IO9 A;  4EQ8 A;  4LJ1 A;  4FGE A;  2HBW A;  4EQA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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