3O98A

Glutathionylspermidine synthetase/amidase c59a complex with adp and gsp
Total Genus 155
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
155
sequence length
609
structure length
599
Chain Sequence
APFGTLLGYAPGGVAIYSSDYSSDAVFRSYIDDEYMGHKWQAVEFARRFLFLNYGVVFTDVGMAWEIFSLRFLREVVNDNILPLQAFPNGSPRAPVAGALLIWDKGGEFKDTGHVAIITQLHGNKVRIAEQNVIHSPLPQGQQWTRELEMVVENGCYTLKDTFDDTTILGWMIQTEDTEYSLPQPEIAGELLKISGARLENKGQFDGKWLDEKDPLQNAYVQANGQVINQDPYHYYTITESAEQELIKATNELHLMYLHATDKVLKDDNLLALFDIPKILWPRLRLSWQRRRHHMITGRMDFCMDERGLKVYEYNADSASCHTEAGLILERWAEQGYKGNGFNPAEGLINELAGAWKHSRARPFVHIMQDKDIEENYHAQFMEQALHQAGFETRILRGLDELGWDAAGQLIDGEGRLVNCVWKTWAWETAFDQIREVREFAAVPIRTGHPQNEVRLIDVLLRPEVLVFEPLWTVIPGNKAILPILWSLFPHHRYLLDTDFTVNDELVKTGYAVKPIAGRCGSNIDLVSHHEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGDESLVIKKESDIEPLIVVK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase, hydrolase
molecule keywords Bifunctional glutathionylspermidine synthetase/amidase
publication title Structure and mechanism of Escherichia coli glutathionylspermidine amidase belonging to the family of cysteine; histidine-dependent amidohydrolases/peptidases
pubmed doi rcsb
source organism Escherichia coli
total genus 155
structure length 599
sequence length 609
chains with identical sequence B
ec nomenclature ec 3.5.1.78: Glutathionylspermidine amidase.
pdb deposition date 2010-08-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03738 GSP_synth Glutathionylspermidine synthase preATP-grasp
A PF05257 CHAP CHAP domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 3o98A01
4EOBA 3KW0A 3PVQA 4Q4TA 4FQAA 3NE0A 4CT3A 4F4MA 4FGIA 4FGDA 4HZ9A 3O98A 3M1UA 4FDYA 4F0WA 2IO7A 4EQAA 4Q4GX 4Q4NA 3PBIA 4EQ8A 2HBWA 2K3AA 2LRJA 2IOAA 2IO9A 3I86A 4CGKA 3PBCA 2IF6A 2FG0A 4LJ1A 3VPIA 4FQBA 2EVRA 2IOBA 4FGEA 4JXBA 2IO8A 4CSHA 4F0VA 4OLKA 3A2YA 2XIVA 2VPSA 3A2ZA 3VPJA 4R0KA 3A30A 2K1GA 3GT2A 3NPFA 4HZBA 3S0QA 2VPMA 3H41A 4HPEA 2VOBA
chains in the Genus database with same CATH superfamily
2WP7A 4EOBA 3KW0A 3PVQA 4Q4TA 4FQAA 3NE0A 4J32A 4JURA 4CT3A 4F4MA 4FGIA 4FGDA 4HZ9A 3O98A 3M1UA 4FDYA 4F0WA 4HFLA 2IO7A 4EQAA 4Q4GX 4Q4NA 3PBIA 4EQ8A 2HBWA 2K3AA 2LRJA 2IOAA 2IO9A 3I86A 4CGKA 3PBCA 2IF6A 2FG0A 4LJ1A 3VPIA 4FQBA 2EVRA 2IOBA 4FGEA 4JXBA 2IO8A 4CSHA 4HFKA 4F0VA 4HFFA 4J30A 4OLKA 3A2YA 2XIVA 2VPSA 3A2ZA 3VPJA 4R0KA 3A30A 2K1GA 3GT2A 3NPFA 4HZBA 3S0QA 2VPMA 3EBQA 3H41A 4HPEA 2VOBA
chains in the Genus database with same CATH topology
4EOBA 3KW0A 3PVQA 4Q4TA 4FQAA 3NE0A 4CT3A 4F4MA 4FGIA 4FGDA 4HZ9A 3O98A 3M1UA 4FDYA 4F0WA 2IO7A 4EQAA 4Q4GX 4Q4NA 3PBIA 4EQ8A 2HBWA 2K3AA 2LRJA 2IOAA 2IO9A 3I86A 4CGKA 3PBCA 2IF6A 2FG0A 4LJ1A 3VPIA 4FQBA 2EVRA 2IOBA 4FGEA 4JXBA 2IO8A 4CSHA 4F0VA 4OLKA 3A2YA 2XIVA 2VPSA 3A2ZA 3VPJA 4R0KA 3A30A 2K1GA 3GT2A 3NPFA 4HZBA 3S0QA 2VPMA 3H41A 4HPEA 2VOBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EOB A;  3KW0 A;  3PVQ A;  4Q4T A;  4FQA A;  3NE0 A;  4CT3 A;  4F4M A;  4FGI A;  4FGD A;  4HZ9 A;  3O98 A;  3M1U A;  4FDY A;  4F0W A;  2IO7 A;  4EQA A;  4Q4G X;  4Q4N A;  3PBI A;  4EQ8 A;  2HBW A;  2K3A A;  2LRJ A;  2IOA A;  2IO9 A;  3I86 A;  4CGK A;  3PBC A;  2IF6 A;  2FG0 A;  4LJ1 A;  3VPI A;  4FQB A;  2EVR A;  2IOB A;  4FGE A;  4JXB A;  2IO8 A;  4CSH A;  4F0V A;  4OLK A;  3A2Y A;  2XIV A;  2VPS A;  3A2Z A;  3VPJ A;  4R0K A;  3A30 A;  2K1G A;  3GT2 A;  3NPF A;  4HZB A;  3S0Q A;  2VPM A;  3H41 A;  4HPE A;  2VOB A; 
#chains in the Genus database with same CATH topology
 2WP7 A;  4EOB A;  3KW0 A;  3PVQ A;  4Q4T A;  4FQA A;  3NE0 A;  4J32 A;  4JUR A;  4CT3 A;  4F4M A;  4FGI A;  4FGD A;  4HZ9 A;  3O98 A;  3M1U A;  4FDY A;  4F0W A;  4HFL A;  2IO7 A;  4EQA A;  4Q4G X;  4Q4N A;  3PBI A;  4EQ8 A;  2HBW A;  2K3A A;  2LRJ A;  2IOA A;  2IO9 A;  3I86 A;  4CGK A;  3PBC A;  2IF6 A;  2FG0 A;  4LJ1 A;  3VPI A;  4FQB A;  2EVR A;  2IOB A;  4FGE A;  4JXB A;  2IO8 A;  4CSH A;  4HFK A;  4F0V A;  4HFF A;  4J30 A;  4OLK A;  3A2Y A;  2XIV A;  2VPS A;  3A2Z A;  3VPJ A;  4R0K A;  3A30 A;  2K1G A;  3GT2 A;  3NPF A;  4HZB A;  3S0Q A;  2VPM A;  3EBQ A;  3H41 A;  4HPE A;  2VOB A; 
#chains in the Genus database with same CATH homology
 4EOB A;  3KW0 A;  3PVQ A;  4Q4T A;  4FQA A;  3NE0 A;  4CT3 A;  4F4M A;  4FGI A;  4FGD A;  4HZ9 A;  3O98 A;  3M1U A;  4FDY A;  4F0W A;  2IO7 A;  4EQA A;  4Q4G X;  4Q4N A;  3PBI A;  4EQ8 A;  2HBW A;  2K3A A;  2LRJ A;  2IOA A;  2IO9 A;  3I86 A;  4CGK A;  3PBC A;  2IF6 A;  2FG0 A;  4LJ1 A;  3VPI A;  4FQB A;  2EVR A;  2IOB A;  4FGE A;  4JXB A;  2IO8 A;  4CSH A;  4F0V A;  4OLK A;  3A2Y A;  2XIV A;  2VPS A;  3A2Z A;  3VPJ A;  4R0K A;  3A30 A;  2K1G A;  3GT2 A;  3NPF A;  4HZB A;  3S0Q A;  2VPM A;  3H41 A;  4HPE A;  2VOB A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...