3OHWA

X-ray structure of phycobilisome lcm core-membrane linker polypeptide (fragment 721-860) from synechocystis sp. pcc 6803, northeast structural genomics consortium target sgr209e
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
127
structure length
127
Chain Sequence
DKVAVKNAIRAAYRQVFERDLEPYIINSEFTALESKLSNNEINVKEFIEGLGTSELYMKEFYAPYPNTKVIEMGTKHFLGRAPLNQKEIQQYNQILASQGLKAFIGAMVNGMEYLQTFGEDTVPYRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Protein binding
molecule keywords Phycobilisome LCM core-membrane linker polypeptide
publication title Northeast Structural Genomics Consortium Target SgR209E
rcsb
source organism Synechocystis sp.
total genus 36
structure length 127
sequence length 127
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00427 PBS_linker_poly Phycobilisome Linker polypeptide
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3130.20 Mainly Alpha Orthogonal Bundle serine acetyltransferase, domain 1 serine acetyltransferase, domain 1 3ohwA00
3OHWA 3OSJA 2L06A 2KY4A 2L3WA 3PRUA 2L8VA 3NPHB
chains in the Genus database with same CATH superfamily
3OHWA 2L06A 1SSQA 4N69A 2L3WA 3Q1XA 4H7OA 4HZCA 4N6BA 2KY4A 4HZDA 3PRUA 2L8VA 3NPHB 3P1BA 4N6AA 3P47A 3GVDA 3F1XA 3MC4A 1T3DA 1SSTA 1SSMA 3OSJA 1S80A
chains in the Genus database with same CATH topology
3OHWA 2L06A 1SSQA 4N69A 2L3WA 3Q1XA 4H7OA 4HZCA 4N6BA 2KY4A 4HZDA 3PRUA 2L8VA 3NPHB 3P1BA 4N6AA 3P47A 3GVDA 3F1XA 3MC4A 1T3DA 1SSTA 1SSMA 3OSJA 1S80A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OHW A;  3OSJ A;  2L06 A;  2KY4 A;  2L3W A;  3PRU A;  2L8V A;  3NPH B; 
#chains in the Genus database with same CATH topology
 3OHW A;  2L06 A;  1SSQ A;  4N69 A;  2L3W A;  3Q1X A;  4H7O A;  4HZC A;  4N6B A;  2KY4 A;  4HZD A;  3PRU A;  2L8V A;  3NPH B;  3P1B A;  4N6A A;  3P47 A;  3GVD A;  3F1X A;  3MC4 A;  1T3D A;  1SST A;  1SSM A;  3OSJ A;  1S80 A; 
#chains in the Genus database with same CATH homology
 3OHW A;  2L06 A;  1SSQ A;  4N69 A;  2L3W A;  3Q1X A;  4H7O A;  4HZC A;  4N6B A;  2KY4 A;  4HZD A;  3PRU A;  2L8V A;  3NPH B;  3P1B A;  4N6A A;  3P47 A;  3GVD A;  3F1X A;  3MC4 A;  1T3D A;  1SST A;  1SSM A;  3OSJ A;  1S80 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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