3OIBA

Crystal structure of a putative acyl-coa dehydrogenase from mycobacterium smegmatis, iodide soak
Total Genus 156
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
381
structure length
381
Chain Sequence
SIWTTAEREALRKTVRAFAEREVLPHAHEWERAGEIPRELHRKAAELGLLGAGFPEDAGGSGGDGADPVVICEEMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRADYVVTAARTGGPGAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTGFAQIAAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQAVQNTLAGMARRIDVARVYTRHVVERQLAGETNLIAEVCFAKNTAVEAGEWVANQAVQLFGGMGYMAESEVERQYRDMRILGIGGGTTEILTSLAAKTLGFQS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Acyl-CoA dehydrogenase
publication title SAD phasing using iodide ions in a high-throughput structural genomics environment.
pubmed doi rcsb
source organism Mycobacterium smegmatis
total genus 156
structure length 381
sequence length 381
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 3oibA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 3oibA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 3oibA02
3PFDA 4KCFA 2JBRA 4L3ZA 2RDZA 3S7WA 4Q5CA 1IS2A 2UXWA 1EGCA 1SIQA 1WS9A 2C12A 3D9EA 3BNJA 4P13A 1UDYA 1UKWA 2C0UA 2JBTA 2R0NA 3MXLA 4G5EA 1EGEA 3LGQA 4U83A 3SXQA 4ZXVA 2A1TA 3LG1A 5K3JA 3D9DA 2PG0A 2E80A 2J7AA 2FONA 3AFEA 4Q5BA 3GNCA 3RKHA 1U8VA 3D6BA 3OIBA 4L3XA 3MMOA 3D1IA 2E81A 2YYJA 2YYMA 3EOMA 4JEKA 3OWAA 4IRNA 3BNHA 2ZO5A 2VR0A 4L1FA 4N5FA 3MPIA 4Q4UA 4M9AA 1W07A 3UU9A 4W9UA 2WBIA 4XVXA 2VIGA 3SCEA 2YYIA 5K3IA 5K3HA 2CX9A 1BUCA 2JIFA 4OO2A 2EBAA 3D9GA 3X0XA 3OWMA 2JBSA 2DDHA 3X0YA 3SF6A 1FS9A 1EGDA 2IX5A 3F29A 4X28C 2D29A 1SIRA 3P4TA 4O5MA 3BNGA 2Z1QA 4ZYJA 2OR0A 3D9FA 4L38A 4Q17A 1RX0A 1JQIA 2DVLA 1QDBA 2R0MA 3BNFA 3B96A 4NXLA 3MDEA 3MDDA 5K3GA 1T9GA 3FO3A 1IVHA 2YYKA 1R2JA 3II9A 1GU6A 2RF7A 3M9VA 4IV6A 3SWOA 3TORA 3MKHA 2RFQA 4DOYA 3MPJA 3R7KA 2OT4A 3EONA 1OAHA 2YYGA 4RM7A 3GQTA 4WJYA 2IX6A 1FS8A 4Q1OA 4KTOA 2REHA 2ZAFA 3NF4A 4HR3A 4X28A 1FS7A 2YYLA 3L1TA 4Q0TA 4L3YA 3FCJA 3HWCA 3GM6A 3UBRA 3AFFA 3TTBA
chains in the Genus database with same CATH superfamily
3PFDA 4KCFA 5M4KA 4FF3A 2JBRA 4L3ZA 4DZYA 1K93A 2RDZA 4AKHA 3S7WA 4Q5CA 3KMLA 1IS2A 2UXWA 2BU7A 1EGCA 1SIQA 5M4NA 1WS9A 2C12A 3D9EA 4LQQB 3BNJA 3C2PA 2Q8IA 4E02A 4P13A 3CRLA 1UDYA 2EBFX 3CE2A 3C3LA 1UKWA 3U33A 2R03A 4FZ4A 1Y8NA 4P79A 2C0UA 4MPEA 2JBTA 3C46A 2R0NA 1XFWA 2BU5A 1Y0VA 3VKHA 3MXLA 2BTZA 2BU6A 4G5EA 1EGEA 3LGQA 4U83A 3SXQA 4ZXVA 2A1TA 1RP3A 3LG1A 4MPCA 5K3JA 3D9DA 2OJQA 2PG0A 4KS9A 3VADA 5BRKA 2E80A 2LFWA 1PK0A 2CJ7A 2J7AA 3Q0AA 2FONA 1GJVA 3AFEA 4HKSA 4MP7A 4Q5BA 3GNCA 2ZDYA 1U8VA 3D6BA 3OIBA 4L3XA 3RKHA 2FP2A 3MMOA 3D1IA 2FP1A 2XS1A 2E81A 4FF2A 2YYJA 2YYMA 2ZKJA 3EOMA 4JEKA 1RJ4A 4KSFA 3OWAA 4IRNA 1XFVA 3BNHA 3N0RA 4MPNA 2ZO5A 1GKXA 5B6BA 2VR0A 3Q23A 1SC5A 3X29A 3D2RA 2HJNA 4L1FA 4H7QA 2E0AA 2Q8HA 5B5WA 4N5FA 3MPIA 2EC5A 1XG2B 4Q4UA 1XFXA 4M9AA 3VKGA 1W07A 1RJ1A 3UU9A 4H85A 4W9UA 3TZ2A 4G97A 4V26A 2WBIA 4XVXA 2OEVA 2VIGA 1R3BA 2AO2A 3SCEA 2YYIA 5K3IA 1LVCA 5K3HA 5J71A 2CX9A 1BUCA 2JIFA 2GBBA 2EBAA 3D9GA 3X0XA 3OWMA 4OO2A 2JBSA 2DDHA 3X0YA 3SF6A 1FS9A 1X91A 1XFZA 2CJ8A 1Y8PA 2YGWA 1EGDA 2IX5A 3F29A 4X28C 1K8TA 4J1VA 2Q8GA 2D29A 1SIRA 3P4TA 4O5MA 1JM6A 1GKZA 3BNGA 2Z1QA 1SK6A 4ZYJA 4HKRA 3DJLA 1XFYA 2QR4A 2XQRB 2ZDXA 5GJVE 2OR0A 3D9FA 2CJ4A 4L38A 1XFUA 1X8ZA 4E01A 1PI1A 2CJ6A 5GJWE 4Q17A 2R02A 1S26A 3CRKA 2AZEA 3TZ0A 5B5VA 1RX0A 1JQIA 2DVLA 1QDBA 2R0MA 3BNFA 4KSAA 5BRMA 3B96A 2XS8A 1Y8OA 5M4PA 4NXLA 3MDEA 3MDDA 3Q22A 5K3GA 1T9GA 2BU2A 3FO3A 2Q8FA 1IVHA 2YYKA 1R2JA 3II9A 4AKGA 1GU6A 2OEXA 2RF7A 3TZ4A 3M9VA 2PO4A 4FF4A 4AKIA 4MP2A 4IV6A 3SWOA 1K90A 3TORA 3MKHA 2RFQA 1X90A 4DOYA 3Q24A 4H81A 3MPJA 4JIOA 3R7KA 2OT4A 2CJ5A 3EONA 1OAHA 2EBHX 2YYGA 3TZ5A 4RM7A 4FF1A 5EZ3A 3GQTA 2R05A 4WJYA 2IX6A 1FS8A 4QICA 5M4MA 4Q1OA 4KTOA 5J6AA 2REHA 2ZAFA 4JIZA 4E00A 3NF4A 4HR3A 4X28A 1FS7A 2YYLA 3L1TA 4LQSB 4F0XA 4Q0TA 2VF1A 4L3YA 3FCJA 3HWCA 2BU8A 3GM6A 4V25A 4AI6A 2F6LA 3UBRA 3AFFA 2PNRA 3TTBA
chains in the Genus database with same CATH topology
3PFDA 4KCFA 2JBRA 4L3ZA 2RDZA 3S7WA 4Q5CA 1IS2A 2UXWA 1EGCA 1SIQA 1WS9A 2C12A 3D9EA 3BNJA 4P13A 1UDYA 1UKWA 2C0UA 2JBTA 2R0NA 3MXLA 4G5EA 1EGEA 3LGQA 4U83A 3SXQA 4ZXVA 2A1TA 3LG1A 5K3JA 3D9DA 2PG0A 2E80A 2J7AA 2FONA 3AFEA 4Q5BA 3GNCA 3RKHA 1U8VA 3D6BA 3OIBA 4L3XA 3MMOA 3D1IA 2E81A 2YYJA 2YYMA 3EOMA 4JEKA 3OWAA 4IRNA 3BNHA 2ZO5A 2VR0A 4L1FA 4N5FA 3MPIA 4Q4UA 4M9AA 1W07A 3UU9A 4W9UA 2WBIA 4XVXA 2VIGA 3SCEA 2YYIA 5K3IA 5K3HA 2CX9A 1BUCA 2JIFA 4OO2A 2EBAA 3D9GA 3X0XA 3OWMA 2JBSA 2DDHA 3X0YA 3SF6A 1FS9A 1EGDA 2IX5A 3F29A 4X28C 2D29A 1SIRA 3P4TA 4O5MA 3BNGA 2Z1QA 4ZYJA 2OR0A 3D9FA 4L38A 4Q17A 1RX0A 1JQIA 2DVLA 1QDBA 2R0MA 3BNFA 3B96A 4NXLA 3MDEA 3MDDA 5K3GA 1T9GA 3FO3A 1IVHA 2YYKA 1R2JA 3II9A 1GU6A 2RF7A 3M9VA 4IV6A 3SWOA 3TORA 3MKHA 2RFQA 4DOYA 3MPJA 3R7KA 2OT4A 3EONA 1OAHA 2YYGA 4RM7A 3GQTA 4WJYA 2IX6A 1FS8A 4Q1OA 4KTOA 2REHA 2ZAFA 3NF4A 4HR3A 4X28A 1FS7A 2YYLA 3L1TA 4Q0TA 4L3YA 3FCJA 3HWCA 3GM6A 3UBRA 3AFFA 3TTBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PFD A;  4KCF A;  2JBR A;  4L3Z A;  2RDZ A;  3S7W A;  4Q5C A;  1IS2 A;  2UXW A;  1EGC A;  1SIQ A;  1WS9 A;  2C12 A;  3D9E A;  3BNJ A;  4P13 A;  1UDY A;  1UKW A;  2C0U A;  2JBT A;  2R0N A;  3MXL A;  4G5E A;  1EGE A;  3LGQ A;  4U83 A;  3SXQ A;  4ZXV A;  2A1T A;  3LG1 A;  5K3J A;  3D9D A;  2PG0 A;  2E80 A;  2J7A A;  2FON A;  3AFE A;  4Q5B A;  3GNC A;  3RKH A;  1U8V A;  3D6B A;  3OIB A;  4L3X A;  3MMO A;  3D1I A;  2E81 A;  2YYJ A;  2YYM A;  3EOM A;  4JEK A;  3OWA A;  4IRN A;  3BNH A;  2ZO5 A;  2VR0 A;  4L1F A;  4N5F A;  3MPI A;  4Q4U A;  4M9A A;  1W07 A;  3UU9 A;  4W9U A;  2WBI A;  4XVX A;  2VIG A;  3SCE A;  2YYI A;  5K3I A;  5K3H A;  2CX9 A;  1BUC A;  2JIF A;  4OO2 A;  2EBA A;  3D9G A;  3X0X A;  3OWM A;  2JBS A;  2DDH A;  3X0Y A;  3SF6 A;  1FS9 A;  1EGD A;  2IX5 A;  3F29 A;  4X28 C;  2D29 A;  1SIR A;  3P4T A;  4O5M A;  3BNG A;  2Z1Q A;  4ZYJ A;  2OR0 A;  3D9F A;  4L38 A;  4Q17 A;  1RX0 A;  1JQI A;  2DVL A;  1QDB A;  2R0M A;  3BNF A;  3B96 A;  4NXL A;  3MDE A;  3MDD A;  5K3G A;  1T9G A;  3FO3 A;  1IVH A;  2YYK A;  1R2J A;  3II9 A;  1GU6 A;  2RF7 A;  3M9V A;  4IV6 A;  3SWO A;  3TOR A;  3MKH A;  2RFQ A;  4DOY A;  3MPJ A;  3R7K A;  2OT4 A;  3EON A;  1OAH A;  2YYG A;  4RM7 A;  3GQT A;  4WJY A;  2IX6 A;  1FS8 A;  4Q1O A;  4KTO A;  2REH A;  2ZAF A;  3NF4 A;  4HR3 A;  4X28 A;  1FS7 A;  2YYL A;  3L1T A;  4Q0T A;  4L3Y A;  3FCJ A;  3HWC A;  3GM6 A;  3UBR A;  3AFF A;  3TTB A; 
#chains in the Genus database with same CATH topology
 3PFD A;  4KCF A;  5M4K A;  4FF3 A;  2JBR A;  4L3Z A;  4DZY A;  1K93 A;  2RDZ A;  4AKH A;  3S7W A;  4Q5C A;  3KML A;  1IS2 A;  2UXW A;  2BU7 A;  1EGC A;  1SIQ A;  5M4N A;  1WS9 A;  2C12 A;  3D9E A;  4LQQ B;  3BNJ A;  3C2P A;  2Q8I A;  4E02 A;  4P13 A;  3CRL A;  1UDY A;  2EBF X;  3CE2 A;  3C3L A;  1UKW A;  3U33 A;  2R03 A;  4FZ4 A;  1Y8N A;  4P79 A;  2C0U A;  4MPE A;  2JBT A;  3C46 A;  2R0N A;  1XFW A;  2BU5 A;  1Y0V A;  3VKH A;  3MXL A;  2BTZ A;  2BU6 A;  4G5E A;  1EGE A;  3LGQ A;  4U83 A;  3SXQ A;  4ZXV A;  2A1T A;  1RP3 A;  3LG1 A;  4MPC A;  5K3J A;  3D9D A;  2OJQ A;  2PG0 A;  4KS9 A;  3VAD A;  5BRK A;  2E80 A;  2LFW A;  1PK0 A;  2CJ7 A;  2J7A A;  3Q0A A;  2FON A;  1GJV A;  3AFE A;  4HKS A;  4MP7 A;  4Q5B A;  3GNC A;  2ZDY A;  1U8V A;  3D6B A;  3OIB A;  4L3X A;  3RKH A;  2FP2 A;  3MMO A;  3D1I A;  2FP1 A;  2XS1 A;  2E81 A;  4FF2 A;  2YYJ A;  2YYM A;  2ZKJ A;  3EOM A;  4JEK A;  1RJ4 A;  4KSF A;  3OWA A;  4IRN A;  1XFV A;  3BNH A;  3N0R A;  4MPN A;  2ZO5 A;  1GKX A;  5B6B A;  2VR0 A;  3Q23 A;  1SC5 A;  3X29 A;  3D2R A;  2HJN A;  4L1F A;  4H7Q A;  2E0A A;  2Q8H A;  5B5W A;  4N5F A;  3MPI A;  2EC5 A;  1XG2 B;  4Q4U A;  1XFX A;  4M9A A;  3VKG A;  1W07 A;  1RJ1 A;  3UU9 A;  4H85 A;  4W9U A;  3TZ2 A;  4G97 A;  4V26 A;  2WBI A;  4XVX A;  2OEV A;  2VIG A;  1R3B A;  2AO2 A;  3SCE A;  2YYI A;  5K3I A;  1LVC A;  5K3H A;  5J71 A;  2CX9 A;  1BUC A;  2JIF A;  2GBB A;  2EBA A;  3D9G A;  3X0X A;  3OWM A;  4OO2 A;  2JBS A;  2DDH A;  3X0Y A;  3SF6 A;  1FS9 A;  1X91 A;  1XFZ A;  2CJ8 A;  1Y8P A;  2YGW A;  1EGD A;  2IX5 A;  3F29 A;  4X28 C;  1K8T A;  4J1V A;  2Q8G A;  2D29 A;  1SIR A;  3P4T A;  4O5M A;  1JM6 A;  1GKZ A;  3BNG A;  2Z1Q A;  1SK6 A;  4ZYJ A;  4HKR A;  3DJL A;  1XFY A;  2QR4 A;  2XQR B;  2ZDX A;  5GJV E;  2OR0 A;  3D9F A;  2CJ4 A;  4L38 A;  1XFU A;  1X8Z A;  4E01 A;  1PI1 A;  2CJ6 A;  5GJW E;  4Q17 A;  2R02 A;  1S26 A;  3CRK A;  2AZE A;  3TZ0 A;  5B5V A;  1RX0 A;  1JQI A;  2DVL A;  1QDB A;  2R0M A;  3BNF A;  4KSA A;  5BRM A;  3B96 A;  2XS8 A;  1Y8O A;  5M4P A;  4NXL A;  3MDE A;  3MDD A;  3Q22 A;  5K3G A;  1T9G A;  2BU2 A;  3FO3 A;  2Q8F A;  1IVH A;  2YYK A;  1R2J A;  3II9 A;  4AKG A;  1GU6 A;  2OEX A;  2RF7 A;  3TZ4 A;  3M9V A;  2PO4 A;  4FF4 A;  4AKI A;  4MP2 A;  4IV6 A;  3SWO A;  1K90 A;  3TOR A;  3MKH A;  2RFQ A;  1X90 A;  4DOY A;  3Q24 A;  4H81 A;  3MPJ A;  4JIO A;  3R7K A;  2OT4 A;  2CJ5 A;  3EON A;  1OAH A;  2EBH X;  2YYG A;  3TZ5 A;  4RM7 A;  4FF1 A;  5EZ3 A;  3GQT A;  2R05 A;  4WJY A;  2IX6 A;  1FS8 A;  4QIC A;  5M4M A;  4Q1O A;  4KTO A;  5J6A A;  2REH A;  2ZAF A;  4JIZ A;  4E00 A;  3NF4 A;  4HR3 A;  4X28 A;  1FS7 A;  2YYL A;  3L1T A;  4LQS B;  4F0X A;  4Q0T A;  2VF1 A;  4L3Y A;  3FCJ A;  3HWC A;  2BU8 A;  3GM6 A;  4V25 A;  4AI6 A;  2F6L A;  3UBR A;  3AFF A;  2PNR A;  3TTB A; 
#chains in the Genus database with same CATH homology
 3PFD A;  4KCF A;  2JBR A;  4L3Z A;  2RDZ A;  3S7W A;  4Q5C A;  1IS2 A;  2UXW A;  1EGC A;  1SIQ A;  1WS9 A;  2C12 A;  3D9E A;  3BNJ A;  4P13 A;  1UDY A;  1UKW A;  2C0U A;  2JBT A;  2R0N A;  3MXL A;  4G5E A;  1EGE A;  3LGQ A;  4U83 A;  3SXQ A;  4ZXV A;  2A1T A;  3LG1 A;  5K3J A;  3D9D A;  2PG0 A;  2E80 A;  2J7A A;  2FON A;  3AFE A;  4Q5B A;  3GNC A;  3RKH A;  1U8V A;  3D6B A;  3OIB A;  4L3X A;  3MMO A;  3D1I A;  2E81 A;  2YYJ A;  2YYM A;  3EOM A;  4JEK A;  3OWA A;  4IRN A;  3BNH A;  2ZO5 A;  2VR0 A;  4L1F A;  4N5F A;  3MPI A;  4Q4U A;  4M9A A;  1W07 A;  3UU9 A;  4W9U A;  2WBI A;  4XVX A;  2VIG A;  3SCE A;  2YYI A;  5K3I A;  5K3H A;  2CX9 A;  1BUC A;  2JIF A;  4OO2 A;  2EBA A;  3D9G A;  3X0X A;  3OWM A;  2JBS A;  2DDH A;  3X0Y A;  3SF6 A;  1FS9 A;  1EGD A;  2IX5 A;  3F29 A;  4X28 C;  2D29 A;  1SIR A;  3P4T A;  4O5M A;  3BNG A;  2Z1Q A;  4ZYJ A;  2OR0 A;  3D9F A;  4L38 A;  4Q17 A;  1RX0 A;  1JQI A;  2DVL A;  1QDB A;  2R0M A;  3BNF A;  3B96 A;  4NXL A;  3MDE A;  3MDD A;  5K3G A;  1T9G A;  3FO3 A;  1IVH A;  2YYK A;  1R2J A;  3II9 A;  1GU6 A;  2RF7 A;  3M9V A;  4IV6 A;  3SWO A;  3TOR A;  3MKH A;  2RFQ A;  4DOY A;  3MPJ A;  3R7K A;  2OT4 A;  3EON A;  1OAH A;  2YYG A;  4RM7 A;  3GQT A;  4WJY A;  2IX6 A;  1FS8 A;  4Q1O A;  4KTO A;  2REH A;  2ZAF A;  3NF4 A;  4HR3 A;  4X28 A;  1FS7 A;  2YYL A;  3L1T A;  4Q0T A;  4L3Y A;  3FCJ A;  3HWC A;  3GM6 A;  3UBR A;  3AFF A;  3TTB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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