3OIRA

Crystal structure of sulfate transporter family protein from wolinella succinogenes
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
122
structure length
122
Chain Sequence
DDPDATSKKVVPLGVEIYEINGPFFFGVADRLKGVLDVIEETPKVFILRMRRVPVIDATGMHALWEFQESCEKRGTILLLSGVSDRLYGALNRFGFIEALGEERVFDHIDKALAYAKLLVET
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transport protein
molecule keywords SULFATE TRANSPORTER SULFATE TRANSPORTER FAMILY PROTEIN
publication title Crystal structure of sulfate transporter family protein from Wolinella succinogenes
rcsb
source organism Wolinella succinogenes
total genus 37
structure length 122
sequence length 122
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-08-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01740 STAS STAS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.24 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA STAS domain 3oirA00
5EUZA 2KLNA 4QTPA 3NY7A 3IF5A 3ZXNA 1AUZA 3AGEA 3IH8A 4DGHA 1VC1A 1THNB 1T6RA 1H4ZA 1BUZA 4XS5A 3MGLA 3OIZA 3IHAA 2KA5A 3LLOA 5EUUA 3T6OA 3ZTBA 3IHBA 1TILB 5EUWA 3IH9A 2VY9A 5EUSA 3AGDA 1TIDB 3OIRA 1TH8B 3F43A 1SBOA 3LKLA 1H4XA 5EZBA 4HYLA 5EUXA 1H4YA 4DGFA
chains in the Genus database with same CATH superfamily
3V97A 2KLNA 1AUZA 3GVJA 3V8VA 2DXLA 2ZO9B 1FC9A 2KA5A 3T6OA 2VY9A 3GK7A 2DXNA 4AEJA 3GVKA 3AGDA 4L1CA 3JU4A 3D03A 1SBOA 1BPLA 3LDFA 4L8KA 5EUXA 1H4YA 4DGFA 3DJAA 3VSEA 3IF5A 3AGEA 2AS0A 1T6RA 1H4ZA 3GHFA 2RRLA 3MGLA 4JC0A 4HIZA 3MOGA 1V0FA 4HYLA 3DUPA 3D3UA 2OASA 2CWWA 3GVLA 1N6FA 3NY7A 1FC7A 3IH8A 4DGHA 1VC1A 3EH7A 3DORA 3GMFA 4XS5A 2ZOAA 1HF2A 1J7XA 4AE2A 1TILB 3C0KA 5EUWA 1N6DA 1TIDB 1K32A 4DMGA 3F43A 3LKLA 1H4XA 1V0EA 5EZBA 3K50A 4GHNA 5EUZA 1WXWA 4QTPA 3ZXNA 1WXXA 1THNB 2B78A 1BUZA 3OIZA 3IHAA 3LLOA 5EUUA 3ZTBA 3IHBA 3IH9A 5EUSA 1FCFA 3OIRA 1TH8B 1N6EA 1FC6A 3QDQA
chains in the Genus database with same CATH topology
5EUZA 2KLNA 4QTPA 3NY7A 3IF5A 3ZXNA 1AUZA 3AGEA 3IH8A 4DGHA 1VC1A 1THNB 1T6RA 1H4ZA 1BUZA 4XS5A 3MGLA 3OIZA 3IHAA 2KA5A 3LLOA 5EUUA 3T6OA 3ZTBA 3IHBA 1TILB 5EUWA 3IH9A 2VY9A 5EUSA 3AGDA 1TIDB 3OIRA 1TH8B 3F43A 1SBOA 3LKLA 1H4XA 5EZBA 4HYLA 5EUXA 1H4YA 4DGFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EUZ A;  2KLN A;  4QTP A;  3NY7 A;  3IF5 A;  3ZXN A;  1AUZ A;  3AGE A;  3IH8 A;  4DGH A;  1VC1 A;  1THN B;  1T6R A;  1H4Z A;  1BUZ A;  4XS5 A;  3MGL A;  3OIZ A;  3IHA A;  2KA5 A;  3LLO A;  5EUU A;  3T6O A;  3ZTB A;  3IHB A;  1TIL B;  5EUW A;  3IH9 A;  2VY9 A;  5EUS A;  3AGD A;  1TID B;  3OIR A;  1TH8 B;  3F43 A;  1SBO A;  3LKL A;  1H4X A;  5EZB A;  4HYL A;  5EUX A;  1H4Y A;  4DGF A; 
#chains in the Genus database with same CATH topology
 3V97 A;  2KLN A;  1AUZ A;  3GVJ A;  3V8V A;  2DXL A;  2ZO9 B;  1FC9 A;  2KA5 A;  3T6O A;  2VY9 A;  3GK7 A;  2DXN A;  4AEJ A;  3GVK A;  3AGD A;  4L1C A;  3JU4 A;  3D03 A;  1SBO A;  1BPL A;  3LDF A;  4L8K A;  5EUX A;  1H4Y A;  4DGF A;  3DJA A;  3VSE A;  3IF5 A;  3AGE A;  2AS0 A;  1T6R A;  1H4Z A;  3GHF A;  2RRL A;  3MGL A;  4JC0 A;  4HIZ A;  3MOG A;  1V0F A;  4HYL A;  3DUP A;  3D3U A;  2OAS A;  2CWW A;  3GVL A;  1N6F A;  3NY7 A;  1FC7 A;  3IH8 A;  4DGH A;  1VC1 A;  3EH7 A;  3DOR A;  3GMF A;  4XS5 A;  2ZOA A;  1HF2 A;  1J7X A;  4AE2 A;  1TIL B;  3C0K A;  5EUW A;  1N6D A;  1TID B;  1K32 A;  4DMG A;  3F43 A;  3LKL A;  1H4X A;  1V0E A;  5EZB A;  3K50 A;  4GHN A;  5EUZ A;  1WXW A;  4QTP A;  3ZXN A;  1WXX A;  1THN B;  2B78 A;  1BUZ A;  3OIZ A;  3IHA A;  3LLO A;  5EUU A;  3ZTB A;  3IHB A;  3IH9 A;  5EUS A;  1FCF A;  3OIR A;  1TH8 B;  1N6E A;  1FC6 A;  3QDQ A; 
#chains in the Genus database with same CATH homology
 5EUZ A;  2KLN A;  4QTP A;  3NY7 A;  3IF5 A;  3ZXN A;  1AUZ A;  3AGE A;  3IH8 A;  4DGH A;  1VC1 A;  1THN B;  1T6R A;  1H4Z A;  1BUZ A;  4XS5 A;  3MGL A;  3OIZ A;  3IHA A;  2KA5 A;  3LLO A;  5EUU A;  3T6O A;  3ZTB A;  3IHB A;  1TIL B;  5EUW A;  3IH9 A;  2VY9 A;  5EUS A;  3AGD A;  1TID B;  3OIR A;  1TH8 B;  3F43 A;  1SBO A;  3LKL A;  1H4X A;  5EZB A;  4HYL A;  5EUX A;  1H4Y A;  4DGF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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