3OJ7A

Crystal structure of a histidine triad family protein from entamoeba histolytica, bound to sulfate
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
109
structure length
109
Chain Sequence
CIFCKIAQKQIPSTIVYEDDEIFAFKDINPIAPIHILVIPKQHIASLNEITEENEAFIGKVLYKVSLIGKKECPEGYRVVNNIGEDAGQTVKHIHFHILGGKKLAWDKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Metal binding protein
molecule keywords Putative histidine triad family protein
publication title Structures of a histidine triad family protein from Entamoeba histolytica bound to sulfate, AMP and GMP.
pubmed doi rcsb
source organism Entamoeba histolytica
total genus 23
structure length 109
sequence length 109
ec nomenclature
pdb deposition date 2010-08-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01230 HIT HIT domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.428.10 Alpha Beta 2-Layer Sandwich HIT family, subunit A HIT-like 3oj7A00
1HXQA 3NRDA 5I2EA 3TW2A 4NDHA 1XMLA 4EQEA 4EGUA 3N1TA 4NDIA 5EMTA 3I4SA 5ED3A 3OMFA 1XMMA 4QDEA 4YKLB 4XBAA 3BL9A 3O1ZA 6RHNA 4INCA 1HXPA 3QGZA 3N1SA 4NK0A 1KPCA 1GUQA 4FITA 4NDFA 1ZWJA 1KPAA 3KSVA 1Y23A 4EQHA 4EQGA 5IPDA 4NJXA 3SPLA 4ZKVA 1KPFA 3WO5A 3FITA 5RHNA 3SZQA 2OIKA 3OJ7A 2H39A 2FITA 4QDVA 3ANOA 5ED6A 1ST4A 1ST0A 1Z84A 5BV3A 5IPCA 3R6FA 6FITA 3SPDA 3RHNA 3O1XA 2FHIA 3P0TA 1FHIA 3BL7A 5I2FA 1VLRA 3OHEA 3I24A 1EMSA 3SP4A 3OXKA 5IPEA 5CS2A 4NJYA 3O0MA 3O1CA 3L7XA 4INIA 2EO4A 5IN3A 3BLAA 1FITA 3IMIA 1GUPA 4NDGA 4QEBA 4ZGLA 4ZKLA 1RZYA 1KPEA 4RHNA 3LB5A 5FITA 5IPBA 2Q4HA 1KPBA 1AV5A 2Q4LA 4NJZA
chains in the Genus database with same CATH superfamily
1HXQA 3NRDA 5I2EA 3TW2A 4NDHA 1XMLA 4EQEA 4EGUA 3N1TA 4NDIA 5EMTA 3I4SA 5ED3A 3OMFA 1XMMA 4QDEA 4YKLB 4XBAA 3BL9A 3O1ZA 4I5WA 4G0AA 6RHNA 4INCA 1HXPA 3QGZA 3N1SA 4NK0A 2R8FA 1KPCA 1GUQA 4FITA 2POFA 4I5VA 4NDFA 1ZWJA 1KPAA 3KSVA 1Y23A 4EQHA 4EQGA 2R7PA 4NJXA 5IPDA 3SPLA 4ZKVA 2GU0A 1KPFA 3WO5A 3FITA 5RHNA 3SZQA 2OIKA 3OJ7A 2H39A 2FITA 4QDVA 3ANOA 4G0JA 5ED6A 1ST4A 1ST0A 1Z84A 2LJWA 5BV3A 5IPCA 3R6FA 6FITA 3SPDA 3RHNA 3O1XA 2FHIA 3P0TA 1FHIA 3BL7A 5I2FA 1VLRA 1L9VA 3OHEA 3I24A 1EMSA 3SP4A 2R7JA 3OXKA 5IPEA 5CS2A 4NJYA 3O0MA 3O1CA 3L7XA 4INIA 2EO4A 5IN3A 3BLAA 1FITA 3IMIA 4I5TA 1GUPA 4NDGA 2R7CA 4QEBA 4ZGLA 4ZKLA 1RZYA 1KPEA 4RHNA 3LB5A 5FITA 5IPBA 2Q4HA 1KPBA 1AV5A 2Q4LA 4NJZA
chains in the Genus database with same CATH topology
1HXQA 3NRDA 5I2EA 3TW2A 4NDHA 1XMLA 4EQEA 4EGUA 3N1TA 4NDIA 5EMTA 3I4SA 5ED3A 3OMFA 1XMMA 4QDEA 4YKLB 4XBAA 3BL9A 3O1ZA 6RHNA 4INCA 1HXPA 3QGZA 3N1SA 4NK0A 1KPCA 1GUQA 4FITA 4NDFA 1ZWJA 1KPAA 3KSVA 1Y23A 4EQHA 4EQGA 5IPDA 4NJXA 3SPLA 4ZKVA 1KPFA 3WO5A 3FITA 5RHNA 3SZQA 2OIKA 3OJ7A 2H39A 2FITA 4QDVA 3ANOA 5ED6A 1ST4A 1ST0A 1Z84A 5BV3A 5IPCA 3R6FA 6FITA 3SPDA 3RHNA 3O1XA 2FHIA 3P0TA 1FHIA 3BL7A 5I2FA 1VLRA 3OHEA 3I24A 1EMSA 3SP4A 3OXKA 5IPEA 5CS2A 4NJYA 3O0MA 3O1CA 3L7XA 4INIA 2EO4A 5IN3A 3BLAA 1FITA 3IMIA 1GUPA 4NDGA 4QEBA 4ZGLA 4ZKLA 1RZYA 1KPEA 4RHNA 3LB5A 5FITA 5IPBA 2Q4HA 1KPBA 1AV5A 2Q4LA 4NJZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HXQ A;  3NRD A;  5I2E A;  3TW2 A;  4NDH A;  1XML A;  4EQE A;  4EGU A;  3N1T A;  4NDI A;  5EMT A;  3I4S A;  5ED3 A;  3OMF A;  1XMM A;  4QDE A;  4YKL B;  4XBA A;  3BL9 A;  3O1Z A;  6RHN A;  4INC A;  1HXP A;  3QGZ A;  3N1S A;  4NK0 A;  1KPC A;  1GUQ A;  4FIT A;  4NDF A;  1ZWJ A;  1KPA A;  3KSV A;  1Y23 A;  4EQH A;  4EQG A;  5IPD A;  4NJX A;  3SPL A;  4ZKV A;  1KPF A;  3WO5 A;  3FIT A;  5RHN A;  3SZQ A;  2OIK A;  3OJ7 A;  2H39 A;  2FIT A;  4QDV A;  3ANO A;  5ED6 A;  1ST4 A;  1ST0 A;  1Z84 A;  5BV3 A;  5IPC A;  3R6F A;  6FIT A;  3SPD A;  3RHN A;  3O1X A;  2FHI A;  3P0T A;  1FHI A;  3BL7 A;  5I2F A;  1VLR A;  3OHE A;  3I24 A;  1EMS A;  3SP4 A;  3OXK A;  5IPE A;  5CS2 A;  4NJY A;  3O0M A;  3O1C A;  3L7X A;  4INI A;  2EO4 A;  5IN3 A;  3BLA A;  1FIT A;  3IMI A;  1GUP A;  4NDG A;  4QEB A;  4ZGL A;  4ZKL A;  1RZY A;  1KPE A;  4RHN A;  3LB5 A;  5FIT A;  5IPB A;  2Q4H A;  1KPB A;  1AV5 A;  2Q4L A;  4NJZ A; 
#chains in the Genus database with same CATH topology
 1HXQ A;  3NRD A;  5I2E A;  3TW2 A;  4NDH A;  1XML A;  4EQE A;  4EGU A;  3N1T A;  4NDI A;  5EMT A;  3I4S A;  5ED3 A;  3OMF A;  1XMM A;  4QDE A;  4YKL B;  4XBA A;  3BL9 A;  3O1Z A;  4I5W A;  4G0A A;  6RHN A;  4INC A;  1HXP A;  3QGZ A;  3N1S A;  4NK0 A;  2R8F A;  1KPC A;  1GUQ A;  4FIT A;  2POF A;  4I5V A;  4NDF A;  1ZWJ A;  1KPA A;  3KSV A;  1Y23 A;  4EQH A;  4EQG A;  2R7P A;  4NJX A;  5IPD A;  3SPL A;  4ZKV A;  2GU0 A;  1KPF A;  3WO5 A;  3FIT A;  5RHN A;  3SZQ A;  2OIK A;  3OJ7 A;  2H39 A;  2FIT A;  4QDV A;  3ANO A;  4G0J A;  5ED6 A;  1ST4 A;  1ST0 A;  1Z84 A;  2LJW A;  5BV3 A;  5IPC A;  3R6F A;  6FIT A;  3SPD A;  3RHN A;  3O1X A;  2FHI A;  3P0T A;  1FHI A;  3BL7 A;  5I2F A;  1VLR A;  1L9V A;  3OHE A;  3I24 A;  1EMS A;  3SP4 A;  2R7J A;  3OXK A;  5IPE A;  5CS2 A;  4NJY A;  3O0M A;  3O1C A;  3L7X A;  4INI A;  2EO4 A;  5IN3 A;  3BLA A;  1FIT A;  3IMI A;  4I5T A;  1GUP A;  4NDG A;  2R7C A;  4QEB A;  4ZGL A;  4ZKL A;  1RZY A;  1KPE A;  4RHN A;  3LB5 A;  5FIT A;  5IPB A;  2Q4H A;  1KPB A;  1AV5 A;  2Q4L A;  4NJZ A; 
#chains in the Genus database with same CATH homology
 1HXQ A;  3NRD A;  5I2E A;  3TW2 A;  4NDH A;  1XML A;  4EQE A;  4EGU A;  3N1T A;  4NDI A;  5EMT A;  3I4S A;  5ED3 A;  3OMF A;  1XMM A;  4QDE A;  4YKL B;  4XBA A;  3BL9 A;  3O1Z A;  6RHN A;  4INC A;  1HXP A;  3QGZ A;  3N1S A;  4NK0 A;  1KPC A;  1GUQ A;  4FIT A;  4NDF A;  1ZWJ A;  1KPA A;  3KSV A;  1Y23 A;  4EQH A;  4EQG A;  5IPD A;  4NJX A;  3SPL A;  4ZKV A;  1KPF A;  3WO5 A;  3FIT A;  5RHN A;  3SZQ A;  2OIK A;  3OJ7 A;  2H39 A;  2FIT A;  4QDV A;  3ANO A;  5ED6 A;  1ST4 A;  1ST0 A;  1Z84 A;  5BV3 A;  5IPC A;  3R6F A;  6FIT A;  3SPD A;  3RHN A;  3O1X A;  2FHI A;  3P0T A;  1FHI A;  3BL7 A;  5I2F A;  1VLR A;  3OHE A;  3I24 A;  1EMS A;  3SP4 A;  3OXK A;  5IPE A;  5CS2 A;  4NJY A;  3O0M A;  3O1C A;  3L7X A;  4INI A;  2EO4 A;  5IN3 A;  3BLA A;  1FIT A;  3IMI A;  1GUP A;  4NDG A;  4QEB A;  4ZGL A;  4ZKL A;  1RZY A;  1KPE A;  4RHN A;  3LB5 A;  5FIT A;  5IPB A;  2Q4H A;  1KPB A;  1AV5 A;  2Q4L A;  4NJZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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