3OL0A

Crystal structure of monofoil-4p homo-trimer: de novo designed monomer trefoil-fold sub-domain which forms homo-trimer assembly
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
43
structure length
43
Chain Sequence
HHHPVLLKSTETGQYLRINPDGTVDGTRDRSDPHIQFQISPEG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags De novo protein
molecule keywords de novo designed monomer trefoil-fold sub-domain which forms
publication title Experimental support for the evolution of symmetric protein architecture from a simple peptide motif.
pubmed doi rcsb
source organism Synthetic construct
total genus 5
structure length 43
sequence length 43
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2010-08-25
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.260 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 3ol0A00
3OL0A
chains in the Genus database with same CATH superfamily
1KBEA 1WGTA 1WGCA 2FNFX 2JA1A 3UEJA 2ENNA 5CCMA 1RFHA 2B0UC 2OD1A 2E5RA 1TUSA 2RC4A 1TBOA 1Y1CA 2NU2I 2KCXA 3SGQI 1PTQA 2JW6A 1IY5A 1MJBA 1M8BA 3QTLD 1PCEA 2L8EA 1CT4I 2WCYA 2SGQI 2X3TA 3D00A 1TURA 2N52A 4JCVE 3R5DA 4E1PA 2L7XA 2QQEA 3CXLA 1XBTA 2Y0MA 1HEVA 2SGFI 1FY7A 3OVOA 2GVIA 4DNCA 1PTRA 5DAEA 1SGRI 1MJAA 2E73A 4GI3C 5E3RA 2KMRA 5CCLA 4OVOA 4UXIA 2SGPI 5FUWA 3TO7A 1H0ZA 3VDUA 1SGNI 1CSOI 1IY6A 1CHOI 2CWHA 1BMOA 2N71A 2NU1I 2BUSA 3BJIA 2ROWA 7WGAA 1SGDI 1ULMA 2QQ0A 1W4RA 2PQ8A 3FC3A 3UGDA 2ELIA 3B4VC 3TJQA 1UVGA 1KBFA 2OVOA 2DKVA 1BUSA 1ULKA 1V1HA 2DIPA 4UXHA 2LUYA 3MEKA 2GKVA 1OMTA 2ERWA 2LEOA 2J9RA 4HGUA 1YU6C 2ARPF 1HPTA 1P9ZA 1WTJA 1DS2I 2K9HA 2V53A 5JHWC 5EX3A 1CT0I 1K7TA 1UHAA 2SGDI 2ORVA 3E59A 2A20A 1CGII 1OYVI 2X52A 3OXLA 1K7UA 1SGPI 1N13A 1PPFI 1SGYI 1Z2IA 3OXGA 5FUXA 1UUCA 1VDDA 1FAQA 2WGCA 1TIHA 2GKTI 2XRCA 1DS3I 1MJ9A 3TO9A 2WVJA 2KMPA 1YTPA 1P9GA 3FSYA 1OMUA 1R79A 1TBQR 2KMQA 2QQCA 2UZ3A 3UEYA 2NU3I 1TBNA 2N17A 1NXUA 1ULNA 2SGEI 3R5BA 4FKDA 1V1IA 2P6AC 1AN1I 1MT1A 2QQDA 1Z7KB 3QWPA 3TOAA 1XX6A 3E2IA 1LR9A 2DB6A 1Y1BA 2YQPA 3TOBA 4UXJA 1HJAI 1OVOA 2J87A 4B6DA 1NUBA 9WGAA 1TOTA 5FUYA 2CJSC 2JXDA 1R0RI 4WP4A 3R5AA 1SGQI 1S20A 2GKRI 5J8CA 1LR8A 2ORWA 1KMAA 1U5KA 2JZMA 2VRWB 1FARA 3HH2C 4SGBI 1TGSI 4AMLA 1CT2I 2JYYA 3VDPA 5FUVA 2GIVA 1XA6A 2YUUA 3R5CA 4MPIA 1SGEI 2CWFA 2V1CA 5EX0A 5HQ8A 2F3CI 3QAHA 5J8FA 2M5XA 3SEKC 1FYBA 2NU4I 1M8CA 3SGBI 4A24A 5E3QA 1K7VA 2LB7A 2N1AB 2RIJA 1PJUA 2UVOA 5HI7A 3KY9A 2B8TA 2OU2A 1W3SA 2ENZA 2V1CC 1IW4A 1UVFA 2ODDA 1TBRR 5E3PA 4E1RA 4L9MA 1CE3A 2W0TA 1Q9BA 1WKXA 3FSXA 3OXFA 3PDNA 1HDLA 3UFFA 2QPOA 1CGJI 1X4SA 2NU0I 3RU0A 2KMOA 3UGIA 3UOEA 3VE5A 2CWGA 1X74A 1LR7A 1Y8FA 3OL0A 3TO6A 3GOXA 2OZUA 3UGLA
chains in the Genus database with same CATH topology
1KBEA 2FNFX 2JA1A 3UEJA 2ENNA 5CCMA 1RFHA 2B0UC 2OD1A 2E5RA 1TUSA 1TBOA 1Y1CA 2NU2I 2KCXA 3SGQI 1PTQA 2JW6A 1M8BA 3QTLD 1PCEA 2L8EA 1CT4I 2WCYA 2SGQI 3D00A 1TURA 2N52A 4JCVE 4E1PA 2L7XA 2QQEA 3CXLA 1XBTA 2SGFI 3OVOA 2GVIA 1PTRA 5DAEA 1SGRI 2E73A 4GI3C 2KMRA 5CCLA 4OVOA 4UXIA 2SGPI 5FUWA 1H0ZA 3VDUA 1SGNI 1CSOI 1IY6A 1CHOI 1BMOA 2N71A 2NU1I 2BUSA 3BJIA 2ROWA 1SGDI 2QQ0A 3FC3A 1W4RA 3UGDA 2ELIA 3B4VC 3TJQA 1UVGA 1KBFA 2OVOA 1BUSA 1V1HA 2DIPA 4UXHA 2LUYA 3MEKA 2GKVA 1OMTA 2ERWA 2LEOA 2J9RA 4HGUA 1YU6C 2ARPF 1HPTA 1DS2I 2K9HA 2V53A 5JHWC 1CT0I 2SGDI 2ORVA 3E59A 2A20A 1CGII 1OYVI 5EX3A 3OXLA 1SGPI 3OXGA 1N13A 1PPFI 1SGYI 5FUXA 1UUCA 1VDDA 1FAQA 1TIHA 2GKTI 2XRCA 1DS3I 2WVJA 2KMPA 1YTPA 1OMUA 1R79A 1TBQR 2KMQA 2QQCA 2UZ3A 3UEYA 2NU3I 1TBNA 2N17A 1IY5A 2SGEI 4FKDA 1V1IA 2P6AC 1AN1I 1MT1A 2QQDA 1Z7KB 3QWPA 1XX6A 3E2IA 1LR9A 2DB6A 1Y1BA 2YQPA 4UXJA 1HJAI 1OVOA 2J87A 4B6DA 1NUBA 1TOTA 5FUYA 2CJSC 2JXDA 1R0RI 1SGQI 2GKRI 1LR8A 2ORWA 1KMAA 1U5KA 2JZMA 2VRWB 1FARA 3HH2C 4SGBI 1TGSI 1CT2I 2JYYA 3VDPA 5FUVA 1XA6A 2YUUA 5EX0A 5HQ8A 1SGEI 2V1CA 2F3CI 2M5XA 3SEKC 1FYBA 2NU4I 1M8CA 3SGBI 4A24A 2N1AB 1PJUA 5HI7A 3KY9A 2B8TA 1W3SA 2ENZA 2V1CC 1IW4A 1UVFA 2ODDA 1TBRR 4E1RA 1CE3A 4L9MA 1HDLA 2W0TA 3OXFA 3PDNA 3UFFA 2QPOA 1CGJI 1X4SA 2NU0I 3RU0A 2KMOA 3UGIA 3VE5A 1X74A 1LR7A 1Y8FA 3OL0A 3GOXA 3UGLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OL0 A; 
#chains in the Genus database with same CATH topology
 1KBE A;  1WGT A;  1WGC A;  2FNF X;  2JA1 A;  3UEJ A;  2ENN A;  5CCM A;  1RFH A;  2B0U C;  2OD1 A;  2E5R A;  1TUS A;  2RC4 A;  1TBO A;  1Y1C A;  2NU2 I;  2KCX A;  3SGQ I;  1PTQ A;  2JW6 A;  1IY5 A;  1MJB A;  1M8B A;  3QTL D;  1PCE A;  2L8E A;  1CT4 I;  2WCY A;  2SGQ I;  2X3T A;  3D00 A;  1TUR A;  2N52 A;  4JCV E;  3R5D A;  4E1P A;  2L7X A;  2QQE A;  3CXL A;  1XBT A;  2Y0M A;  1HEV A;  2SGF I;  1FY7 A;  3OVO A;  2GVI A;  4DNC A;  1PTR A;  5DAE A;  1SGR I;  1MJA A;  2E73 A;  4GI3 C;  5E3R A;  2KMR A;  5CCL A;  4OVO A;  4UXI A;  2SGP I;  5FUW A;  3TO7 A;  1H0Z A;  3VDU A;  1SGN I;  1CSO I;  1IY6 A;  1CHO I;  2CWH A;  1BMO A;  2N71 A;  2NU1 I;  2BUS A;  3BJI A;  2ROW A;  7WGA A;  1SGD I;  1ULM A;  2QQ0 A;  1W4R A;  2PQ8 A;  3FC3 A;  3UGD A;  2ELI A;  3B4V C;  3TJQ A;  1UVG A;  1KBF A;  2OVO A;  2DKV A;  1BUS A;  1ULK A;  1V1H A;  2DIP A;  4UXH A;  2LUY A;  3MEK A;  2GKV A;  1OMT A;  2ERW A;  2LEO A;  2J9R A;  4HGU A;  1YU6 C;  2ARP F;  1HPT A;  1P9Z A;  1WTJ A;  1DS2 I;  2K9H A;  2V53 A;  5JHW C;  5EX3 A;  1CT0 I;  1K7T A;  1UHA A;  2SGD I;  2ORV A;  3E59 A;  2A20 A;  1CGI I;  1OYV I;  2X52 A;  3OXL A;  1K7U A;  1SGP I;  1N13 A;  1PPF I;  1SGY I;  1Z2I A;  3OXG A;  5FUX A;  1UUC A;  1VDD A;  1FAQ A;  2WGC A;  1TIH A;  2GKT I;  2XRC A;  1DS3 I;  1MJ9 A;  3TO9 A;  2WVJ A;  2KMP A;  1YTP A;  1P9G A;  3FSY A;  1OMU A;  1R79 A;  1TBQ R;  2KMQ A;  2QQC A;  2UZ3 A;  3UEY A;  2NU3 I;  1TBN A;  2N17 A;  1NXU A;  1ULN A;  2SGE I;  3R5B A;  4FKD A;  1V1I A;  2P6A C;  1AN1 I;  1MT1 A;  2QQD A;  1Z7K B;  3QWP A;  3TOA A;  1XX6 A;  3E2I A;  1LR9 A;  2DB6 A;  1Y1B A;  2YQP A;  3TOB A;  4UXJ A;  1HJA I;  1OVO A;  2J87 A;  4B6D A;  1NUB A;  9WGA A;  1TOT A;  5FUY A;  2CJS C;  2JXD A;  1R0R I;  4WP4 A;  3R5A A;  1SGQ I;  1S20 A;  2GKR I;  5J8C A;  1LR8 A;  2ORW A;  1KMA A;  1U5K A;  2JZM A;  2VRW B;  1FAR A;  3HH2 C;  4SGB I;  1TGS I;  4AML A;  1CT2 I;  2JYY A;  3VDP A;  5FUV A;  2GIV A;  1XA6 A;  2YUU A;  3R5C A;  4MPI A;  1SGE I;  2CWF A;  2V1C A;  5EX0 A;  5HQ8 A;  2F3C I;  3QAH A;  5J8F A;  2M5X A;  3SEK C;  1FYB A;  2NU4 I;  1M8C A;  3SGB I;  4A24 A;  5E3Q A;  1K7V A;  2LB7 A;  2N1A B;  2RIJ A;  1PJU A;  2UVO A;  5HI7 A;  3KY9 A;  2B8T A;  2OU2 A;  1W3S A;  2ENZ A;  2V1C C;  1IW4 A;  1UVF A;  2ODD A;  1TBR R;  5E3P A;  4E1R A;  4L9M A;  1CE3 A;  2W0T A;  1Q9B A;  1WKX A;  3FSX A;  3OXF A;  3PDN A;  1HDL A;  3UFF A;  2QPO A;  1CGJ I;  1X4S A;  2NU0 I;  3RU0 A;  2KMO A;  3UGI A;  3UOE A;  3VE5 A;  2CWG A;  1X74 A;  1LR7 A;  1Y8F A;  3OL0 A;  3TO6 A;  3GOX A;  2OZU A;  3UGL A; 
#chains in the Genus database with same CATH homology
 1KBE A;  2FNF X;  2JA1 A;  3UEJ A;  2ENN A;  5CCM A;  1RFH A;  2B0U C;  2OD1 A;  2E5R A;  1TUS A;  1TBO A;  1Y1C A;  2NU2 I;  2KCX A;  3SGQ I;  1PTQ A;  2JW6 A;  1M8B A;  3QTL D;  1PCE A;  2L8E A;  1CT4 I;  2WCY A;  2SGQ I;  3D00 A;  1TUR A;  2N52 A;  4JCV E;  4E1P A;  2L7X A;  2QQE A;  3CXL A;  1XBT A;  2SGF I;  3OVO A;  2GVI A;  1PTR A;  5DAE A;  1SGR I;  2E73 A;  4GI3 C;  2KMR A;  5CCL A;  4OVO A;  4UXI A;  2SGP I;  5FUW A;  1H0Z A;  3VDU A;  1SGN I;  1CSO I;  1IY6 A;  1CHO I;  1BMO A;  2N71 A;  2NU1 I;  2BUS A;  3BJI A;  2ROW A;  1SGD I;  2QQ0 A;  3FC3 A;  1W4R A;  3UGD A;  2ELI A;  3B4V C;  3TJQ A;  1UVG A;  1KBF A;  2OVO A;  1BUS A;  1V1H A;  2DIP A;  4UXH A;  2LUY A;  3MEK A;  2GKV A;  1OMT A;  2ERW A;  2LEO A;  2J9R A;  4HGU A;  1YU6 C;  2ARP F;  1HPT A;  1DS2 I;  2K9H A;  2V53 A;  5JHW C;  1CT0 I;  2SGD I;  2ORV A;  3E59 A;  2A20 A;  1CGI I;  1OYV I;  5EX3 A;  3OXL A;  1SGP I;  3OXG A;  1N13 A;  1PPF I;  1SGY I;  5FUX A;  1UUC A;  1VDD A;  1FAQ A;  1TIH A;  2GKT I;  2XRC A;  1DS3 I;  2WVJ A;  2KMP A;  1YTP A;  1OMU A;  1R79 A;  1TBQ R;  2KMQ A;  2QQC A;  2UZ3 A;  3UEY A;  2NU3 I;  1TBN A;  2N17 A;  1IY5 A;  2SGE I;  4FKD A;  1V1I A;  2P6A C;  1AN1 I;  1MT1 A;  2QQD A;  1Z7K B;  3QWP A;  1XX6 A;  3E2I A;  1LR9 A;  2DB6 A;  1Y1B A;  2YQP A;  4UXJ A;  1HJA I;  1OVO A;  2J87 A;  4B6D A;  1NUB A;  1TOT A;  5FUY A;  2CJS C;  2JXD A;  1R0R I;  1SGQ I;  2GKR I;  1LR8 A;  2ORW A;  1KMA A;  1U5K A;  2JZM A;  2VRW B;  1FAR A;  3HH2 C;  4SGB I;  1TGS I;  1CT2 I;  2JYY A;  3VDP A;  5FUV A;  1XA6 A;  2YUU A;  5EX0 A;  5HQ8 A;  1SGE I;  2V1C A;  2F3C I;  2M5X A;  3SEK C;  1FYB A;  2NU4 I;  1M8C A;  3SGB I;  4A24 A;  2N1A B;  1PJU A;  5HI7 A;  3KY9 A;  2B8T A;  1W3S A;  2ENZ A;  2V1C C;  1IW4 A;  1UVF A;  2ODD A;  1TBR R;  4E1R A;  1CE3 A;  4L9M A;  1HDL A;  2W0T A;  3OXF A;  3PDN A;  3UFF A;  2QPO A;  1CGJ I;  1X4S A;  2NU0 I;  3RU0 A;  2KMO A;  3UGI A;  3VE5 A;  1X74 A;  1LR7 A;  1Y8F A;  3OL0 A;  3GOX A;  3UGL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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