3OLNA

Crystal structure of the sra domain of e3 ubiquitin-protein ligase uhrf2
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
192
structure length
181
Chain Sequence
IVPSNHYGPIPGIPVGSTWRFRVQVSEAGVHRPHVGGIHGRSNDGAYSLVLAGGFADEVDRGDEFTYTGSGGPSADQTLTNMNRALALNCDAPLDDKIGAESRNWRAGKPVRVIRSFKGRKISKYAPEEGNRYDGIYKVVKYWPEISSSHGFLVWRYLLRRDDVEPAPWTSEGIERSRRLC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase
molecule keywords E3 ubiquitin-protein ligase UHRF2
publication title The Set and Ring Associated (SRA) domain of human ubiquitin-like containing PHD and RING finger domains 2 (UHRF2)
rcsb
source organism Homo sapiens
total genus 49
structure length 181
sequence length 192
chains with identical sequence B
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2010-08-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02182 SAD_SRA SAD/SRA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.280.10 Mainly Beta Roll PUA domain-like SRA-YDG 3olnA00
2PB7A 2ZKEA 2ZO1B 3OLNA 4PW5A 2ZKFA 3FDEA 4NJ5A 4PW7A 3F8IA 2ZKGA 3F8JB 2ZO0B 2ZO2B 3BI7A 3CLZA 4PW6A 2ZKDA 3DWHA
chains in the Genus database with same CATH superfamily
2PB7A 2ZKEA 2ZO1B 3OLNA 4F0PA 3Q0BX 4PW5A 2ZKFA 4OC8A 3FDEA 4NJ5A 4PW7A 3Q0DA 3F8IA 3Q0FA 4F0QA 2ZKGA 3Q0CA 3F8JB 2ZO0B 2ZO2B 4YGIA 3BI7A 3CLZA 4PW6A 2ZKDA 3DWHA 4RZLA 4R28A
chains in the Genus database with same CATH topology
2PB7A 2ZKEA 2ZO1B 3OLNA 4PW5A 2ZKFA 3FDEA 4NJ5A 4PW7A 3F8IA 2ZKGA 3F8JB 2ZO0B 2ZO2B 3BI7A 3CLZA 4PW6A 2ZKDA 3DWHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PB7 A;  2ZKE A;  2ZO1 B;  3OLN A;  4PW5 A;  2ZKF A;  3FDE A;  4NJ5 A;  4PW7 A;  3F8I A;  2ZKG A;  3F8J B;  2ZO0 B;  2ZO2 B;  3BI7 A;  3CLZ A;  4PW6 A;  2ZKD A;  3DWH A; 
#chains in the Genus database with same CATH topology
 2PB7 A;  2ZKE A;  2ZO1 B;  3OLN A;  4F0P A;  3Q0B X;  4PW5 A;  2ZKF A;  4OC8 A;  3FDE A;  4NJ5 A;  4PW7 A;  3Q0D A;  3F8I A;  3Q0F A;  4F0Q A;  2ZKG A;  3Q0C A;  3F8J B;  2ZO0 B;  2ZO2 B;  4YGI A;  3BI7 A;  3CLZ A;  4PW6 A;  2ZKD A;  3DWH A;  4RZL A;  4R28 A; 
#chains in the Genus database with same CATH homology
 2PB7 A;  2ZKE A;  2ZO1 B;  3OLN A;  4PW5 A;  2ZKF A;  3FDE A;  4NJ5 A;  4PW7 A;  3F8I A;  2ZKG A;  3F8J B;  2ZO0 B;  2ZO2 B;  3BI7 A;  3CLZ A;  4PW6 A;  2ZKD A;  3DWH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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