3OLPA

Crystal structure of a bacterial phosphoglucomutase, an enzyme important in the virulence of multiple human pathogens
Total Genus 181
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
181
sequence length
543
structure length
543
Chain Sequence
AIHNRAGQPAQQSDLINVAQLTAQYYVLKPEAGNAEHAVKFGTSGHRGSAGRHSFNEPHILAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFISVLEVLAANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPPNGGPADTNVTKVVEDRANALLAGGLQGVKRISLDAAMASGHVKAVDLVQPFVEGLADIVDMAAIQKAGLTLGVDPLGGSGIEYWKRIAEHYKLNLTLVNDQVDQTFRFMHLDKDGAIRMDCSSECAMAGLLALRDKFDLAFANDPDYDRHGIVTPAGLMNPNHYLAVAINYLFQHRPLWGKDVAVGKTLVSSAMIDRVVNDLGRKLVEVPVGFKWFVDGLFDGSFGFGGEESAGASFLRFDGTPWSTDKDGIIMCLLAAEITAVTGKNPQEHYNELAARFGAPSYNRLQASATSAQKAALSKLSPEMVSASTLAGDPITARLTAAPGNGASIGGLKVMTDNGWFAARPSGTEDAYKIYCESFLGEEHRKQIEKEAVEIVSEVLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Phosphoglucomutase
publication title Crystal structure of a bacterial phosphoglucomutase, an enzyme involved in the virulence of multiple human pathogens.
pubmed doi rcsb
source organism Salmonella typhimurium
molecule tags Isomerase
total genus 181
structure length 543
sequence length 543
chains with identical sequence B
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 2010-08-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 3olpA04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 3olpA03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 3olpA02
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 3olpA01
3C04A 5JMVD 3OLPA 3ENOC 2DKCA 1P5DX 2H5AX 2DKDA 3BKQX 3RSMA 5F9CA 3PMGA 3ENCA 5BMPA 4WX8A 1WJWA 2FUVA 4QG5A 1WQAA 4WXAA 2H4LX 4MRQA 2JPIA 3I3WA 4HJHA 1C4GA 1LXTA 5HSHA 3UW2A 1KFIA 1P5GX 3PDKA 2EHPA 2DKAA 5EPCA 2FKFA 1PCJX 5JN5A 1PCMX 4IL8A 2F7LA 5KL0A 2Z0FA 1K35A 2EIUA 1K2YX 4BJUA 1JDYA 1C47A 2FKMX 5BMNA 1KFQA 1VKLA 3NA5A 1TUOA
chains in the Genus database with same CATH superfamily
2VJ0A 2EHBD 3F0ZA 1Q9UA 1P5DX 1QN3A 1KO9A 2G30A 5F9CA 3IH7A 3PMGA 3KTUA 1LWVA 1M5Q1 3EIKA 2HZSA 4WX8A 5BMPA 1YQRA 1QNBA 2HKPA 1R4XA 4WXAA 2JPIA 2LAEA 1J3MA 1C4GA 3I3WA 5HSHA 1RM1A 3UW2A 3PDKA 2DKAA 2OOXA 5JN5A 3TE5A 1T6AA 1W80A 2HZMA 4Q11A 2I5WA 4PY5A 1LWYA 5KL0A 4D7QA 3F10A 4BJUA 1B9KA 1JDYA 3I0WA 3D4VA 3CW7A 5BMNA 4EAJA 1QN4A 1VKLA 1VOKA 1K2YX 2YH5A 1D3UA 1QN8A 1EUVA 5JMVD 2QR1A 4EAKA 1QNAA 2NOLA 2DKCA 3CVSA 2DKDA 2HL9A 3OH9A 2Y8LA 3OSMA 1PCZA 1WJWA 2QLVA 2QREA 2H4LX 4HJHA 3T4NA 3CWAA 1NH2A 1KFIA 2HL8A 5IYBP 1P5GX 1TBAB 3ULXA 2NWVA 4WZSD 1PCJX 2NOEA 1QTSA 1TGHA 1QTPA 3EAYA 4TPSA 4ROCB 4B0AA 5IYCP 2Z0FA 3OSEA 2V9JA 1KY6A 1QNEA 1XSZA 4I8OA 3OSTA 3OGDA 2NVMA 2D0CA 3CWTA 3H1ZA 1C9BB 1LWWA 2XHIA 3I0XA 1KYDA 1N3AA 3VN5A 4DULA 3OC3C 2QRCA 2NOHA 3RSMA 2IV9A 2V92A 3DPUA 3SNSA 2NLVA 1KYUA 4EALA 3ENCA 4RODB 3HS9A 2FGTA 3OH6A 1NVPA 1CDWA 2FUVA 1NGMA 1WQAA 2R5XA 3TDHA 2D0AA 3RPJA 4CFFA 1LXTA 2ZFDB 5AN4A 2QRDA 2Z8UA 3OCIA 1QN5A 2NOZA 2D0BA 1YQKA 5EPCA 1YTFA 1MP9A 1PCMX 4IL8A 4EJZA 1N39A 1TBPA 1UT7A 3DPTA 4EAIA 1AISA 1KY7A 1DIZA 1FN7A 2EIUA 1E42A 4D7RA 2NOIA 1YQMA 1KFQA 1TUOA 5IYDP 3C04A 1JFIC 3CWSA 3OLPA 1PZDA 1KYFA 3ENOC 4EAGA 2JHJA 2H5AX 3BKQX 1M3QA 2NOFA 3KRMA 3CVTA 2JHNA 4EJYA 2YA3A 1EBMA 1VTLE 3D7QA 4QG5A 1M3HA 1QN9A 1UT4A 2IV8A 3CWUA 3ASMA 3N89A 4MRQA 1N3CA 1HU0A 1VOLB 2JOIA 4ROEB 1PVSA 2Y8QA 2EHPA 2FKFA 2PWWA 2F7LA 2V8QA 1QNCA 2MZ8A 1YQLA 2O3OA 1QN7A 1YTBA 1MPGA 4C7PA 1VTOA 1QN6A 1K35A 2MJ7A 2OOYA 1C47A 1UL7A 1V5SA 2FKMX 2NOBA 3HS8A 3NA5A
chains in the Genus database with same CATH topology
3C04A 5JMVD 3OLPA 3ENOC 2DKCA 1P5DX 2H5AX 2DKDA 3BKQX 3RSMA 5F9CA 3PMGA 3ENCA 5BMPA 4WX8A 1WJWA 2FUVA 4QG5A 1WQAA 4WXAA 2H4LX 4MRQA 2JPIA 3I3WA 4HJHA 1C4GA 1LXTA 5HSHA 3UW2A 1KFIA 1P5GX 3PDKA 2EHPA 2DKAA 5EPCA 2FKFA 1PCJX 5JN5A 1PCMX 4IL8A 2F7LA 5KL0A 2Z0FA 1K35A 2EIUA 1K2YX 4BJUA 1JDYA 1C47A 2FKMX 5BMNA 1KFQA 1VKLA 3NA5A 1TUOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3C04 A;  5JMV D;  3OLP A;  3ENO C;  2DKC A;  1P5D X;  2H5A X;  2DKD A;  3BKQ X;  3RSM A;  5F9C A;  3PMG A;  3ENC A;  5BMP A;  4WX8 A;  1WJW A;  2FUV A;  4QG5 A;  1WQA A;  4WXA A;  2H4L X;  4MRQ A;  2JPI A;  3I3W A;  4HJH A;  1C4G A;  1LXT A;  5HSH A;  3UW2 A;  1KFI A;  1P5G X;  3PDK A;  2EHP A;  2DKA A;  5EPC A;  2FKF A;  1PCJ X;  5JN5 A;  1PCM X;  4IL8 A;  2F7L A;  5KL0 A;  2Z0F A;  1K35 A;  2EIU A;  1K2Y X;  4BJU A;  1JDY A;  1C47 A;  2FKM X;  5BMN A;  1KFQ A;  1VKL A;  3NA5 A;  1TUO A; 
#chains in the Genus database with same CATH topology
 2VJ0 A;  2EHB D;  3F0Z A;  1Q9U A;  1P5D X;  1QN3 A;  1KO9 A;  2G30 A;  5F9C A;  3IH7 A;  3PMG A;  3KTU A;  1LWV A;  1M5Q 1;  3EIK A;  2HZS A;  4WX8 A;  5BMP A;  1YQR A;  1QNB A;  2HKP A;  1R4X A;  4WXA A;  2JPI A;  2LAE A;  1J3M A;  1C4G A;  3I3W A;  5HSH A;  1RM1 A;  3UW2 A;  3PDK A;  2DKA A;  2OOX A;  5JN5 A;  3TE5 A;  1T6A A;  1W80 A;  2HZM A;  4Q11 A;  2I5W A;  4PY5 A;  1LWY A;  5KL0 A;  4D7Q A;  3F10 A;  4BJU A;  1B9K A;  1JDY A;  3I0W A;  3D4V A;  3CW7 A;  5BMN A;  4EAJ A;  1QN4 A;  1VKL A;  1VOK A;  1K2Y X;  2YH5 A;  1D3U A;  1QN8 A;  1EUV A;  5JMV D;  2QR1 A;  4EAK A;  1QNA A;  2NOL A;  2DKC A;  3CVS A;  2DKD A;  2HL9 A;  3OH9 A;  2Y8L A;  3OSM A;  1PCZ A;  1WJW A;  2QLV A;  2QRE A;  2H4L X;  4HJH A;  3T4N A;  3CWA A;  1NH2 A;  1KFI A;  2HL8 A;  5IYB P;  1P5G X;  1TBA B;  3ULX A;  2NWV A;  4WZS D;  1PCJ X;  2NOE A;  1QTS A;  1TGH A;  1QTP A;  3EAY A;  4TPS A;  4ROC B;  4B0A A;  5IYC P;  2Z0F A;  3OSE A;  2V9J A;  1KY6 A;  1QNE A;  1XSZ A;  4I8O A;  3OST A;  3OGD A;  2NVM A;  2D0C A;  3CWT A;  3H1Z A;  1C9B B;  1LWW A;  2XHI A;  3I0X A;  1KYD A;  1N3A A;  3VN5 A;  4DUL A;  3OC3 C;  2QRC A;  2NOH A;  3RSM A;  2IV9 A;  2V92 A;  3DPU A;  3SNS A;  2NLV A;  1KYU A;  4EAL A;  3ENC A;  4ROD B;  3HS9 A;  2FGT A;  3OH6 A;  1NVP A;  1CDW A;  2FUV A;  1NGM A;  1WQA A;  2R5X A;  3TDH A;  2D0A A;  3RPJ A;  4CFF A;  1LXT A;  2ZFD B;  5AN4 A;  2QRD A;  2Z8U A;  3OCI A;  1QN5 A;  2NOZ A;  2D0B A;  1YQK A;  5EPC A;  1YTF A;  1MP9 A;  1PCM X;  4IL8 A;  4EJZ A;  1N39 A;  1TBP A;  1UT7 A;  3DPT A;  4EAI A;  1AIS A;  1KY7 A;  1DIZ A;  1FN7 A;  2EIU A;  1E42 A;  4D7R A;  2NOI A;  1YQM A;  1KFQ A;  1TUO A;  5IYD P;  3C04 A;  1JFI C;  3CWS A;  3OLP A;  1PZD A;  1KYF A;  3ENO C;  4EAG A;  2JHJ A;  2H5A X;  3BKQ X;  1M3Q A;  2NOF A;  3KRM A;  3CVT A;  2JHN A;  4EJY A;  2YA3 A;  1EBM A;  1VTL E;  3D7Q A;  4QG5 A;  1M3H A;  1QN9 A;  1UT4 A;  2IV8 A;  3CWU A;  3ASM A;  3N89 A;  4MRQ A;  1N3C A;  1HU0 A;  1VOL B;  2JOI A;  4ROE B;  1PVS A;  2Y8Q A;  2EHP A;  2FKF A;  2PWW A;  2F7L A;  2V8Q A;  1QNC A;  2MZ8 A;  1YQL A;  2O3O A;  1QN7 A;  1YTB A;  1MPG A;  4C7P A;  1VTO A;  1QN6 A;  1K35 A;  2MJ7 A;  2OOY A;  1C47 A;  1UL7 A;  1V5S A;  2FKM X;  2NOB A;  3HS8 A;  3NA5 A; 
#chains in the Genus database with same CATH homology
 3C04 A;  5JMV D;  3OLP A;  3ENO C;  2DKC A;  1P5D X;  2H5A X;  2DKD A;  3BKQ X;  3RSM A;  5F9C A;  3PMG A;  3ENC A;  5BMP A;  4WX8 A;  1WJW A;  2FUV A;  4QG5 A;  1WQA A;  4WXA A;  2H4L X;  4MRQ A;  2JPI A;  3I3W A;  4HJH A;  1C4G A;  1LXT A;  5HSH A;  3UW2 A;  1KFI A;  1P5G X;  3PDK A;  2EHP A;  2DKA A;  5EPC A;  2FKF A;  1PCJ X;  5JN5 A;  1PCM X;  4IL8 A;  2F7L A;  5KL0 A;  2Z0F A;  1K35 A;  2EIU A;  1K2Y X;  4BJU A;  1JDY A;  1C47 A;  2FKM X;  5BMN A;  1KFQ A;  1VKL A;  3NA5 A;  1TUO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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