3OM6A

Crystal structure of b. megaterium levansucrase mutant y247a
Total Genus 130
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
130
sequence length
448
structure length
448
Chain Sequence
b'SKDFNNSYGISHITRDNMVKIPQQQNSDQFKVPAFDESTIKNIASAKGKNASGNTIDLDVWDSWPLQNADGTVATYHGYQIVFALAGDPKDSNDTSVYLFYKKAGDKSIDSWKNAGRVFKDSDKFVPNDPHLKNQTQEWSGSGTLTKDGKVRLFYTDYSGKQYGKQTLTTAQVNMSQPNDNTLKVDGVEDYKSIFDGDGKIYQTVQQFIDEGGADTGDNHTLRDPHYIEDNGHKYLVFEANTGTEDGYQGEDSLYNRAYYGGNNPFFQSEKKKLLEGSNKEKASLANGALGIIELNDDYTLKKVMKPLITSNTVTDEIERANIFKKDGKWYLFTDSRGSKMTIDGIGQDDVYMLGYVSNTLTGKYKPLNDTGLVLHMDLDPNDKTFTYSHFAVPQTKGDNVVITSYMTNRGFYEDNHSTFAPSFLVNIDGSKTSVVKDRVLEQGQLTV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Levansucrase
publication title Polysaccharide Synthesis of the Levansucrase SacB from Bacillus megaterium Is Controlled by Distinct Surface Motifs.
pubmed doi rcsb
source organism Bacillus megaterium
molecule tags Transferase
total genus 130
structure length 448
sequence length 448
chains with identical sequence B, C, D
ec nomenclature ec 2.4.1.10: Levansucrase.
pdb deposition date 2010-08-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02435 Glyco_hydro_68 Levansucrase/Invertase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 3om6A01
3BYKA 5AYCA 3TAWA 4ONZA 3QEEA 4N4BA 3C7EA 5FKCA 1WL7A 5GLQA 5ANNA 3BYNA 3QC2A 3R67A 4U6BA 4KCBA 4AK5A 2X8SA 4KMIA 3WPUA 1Y4WA 4N2ZA 5FMDA 3VT1A 4D47A 1Y7BA 3LFIA 5A8CA 5JOWA 3UGFA 5JOYA 2EXKA 4MLGA 2AEYA 3VSRA 3WN1A 4FFFA 5AYDA 3R4YA 5FK8A 2X8FA 3P2NA 1YRZA 5FK7A 3AKHA 4O8OA 3BYLA 4KCAA 3VSSA 1W18A 2OXBA 5A7VA 3WAUA 1VKDA 5JOXA 3VSZA 3ZXKA 3C7OA 4AK6A 2YFTA 5FIXA 5FLWA 2AC1A 3WPVA 3LF7A 5C0PA 1PT2A 3LDRA 3WATA 3C7FA 2EXHA 2QQVA 1YIFA 3C2UA 4UDGA 4UDKE 2VDTA 5AY9A 3PIGA 3QEDA 3K1UA 5B6TA 4UDIA 3WPZA 5JOZA 5GLMA 3WN0A 3LEMA 4QQSA 3VT0A 2AEZA 3LIHA 3VT2A 4U6DA 2X8TA 4KC7A 3WMZA 3D61A 3OM2A 3R4ZA 4KC8A 3NQHA 3AKFA 1GYHA 2EXJA 5GLOA 2ADEA 1W2TA 1GYDB 1UV4A 5GLNA 4EQVA 3PIJA 5FKBA 1YI7A 1Y9MA 3D5YA 5GLRA 5A8DA 3LV4A 4O8NA 3AKIA 3OM4A 2QQUA 2YFRA 3VSFA 3AKGA 3KSTA 3OM5A 4N2RA 4UDKA 3WN2A 3U75A 1OYGA 1UYPA 3C7GA 3ZXJA 4COTA 3KF3A 1Y9GA 3D60A 2QQWA 3QZ4A 3WASA 3ZXLA 4FFIA 4FFGA 3U14A 3QEFA 3OM7A 5A7VB 1ST8A 5GLKA 5AYEA 5B6SA 1GYEB 2ADDA 4FFHA 2YFSA 3SC7X 4O8PA 5GLLA 2XQRA 4AK7A 5GLPA 3C7HA 3OM6A 3KF5A 4PVAA 2EXIA 3LIGA 3WMYA 3BYJA 3RWKX 3LDKA 4N1IA 3WPYA 3CU9A 5FMCA 5FMBA 4PVIA 3D5ZA 2B4WA 4NOVA 3UGGA 3UGHA 4UDJA
chains in the Genus database with same CATH superfamily
3BYKA 5AYCA 3TAWA 4ONZA 3QEEA 4N4BA 3C7EA 5FKCA 1WL7A 5GLQA 5ANNA 3BYNA 3QC2A 3R67A 4U6BA 4KCBA 1TL2A 4AK5A 2X8SA 4KMIA 3WPUA 1Y4WA 4N2ZA 5FMDA 3VT1A 4D47A 1Y7BA 3LFIA 5A8CA 5JOWA 3UGFA 5JOYA 2EXKA 4MLGA 2AEYA 3VSRA 3WN1A 4FFFA 5AYDA 3R4YA 5FK8A 2X8FA 3P2NA 1YRZA 5FK7A 3AKHA 4O8OA 3BYLA 4KCAA 3VSSA 1W18A 2OXBA 5A7VA 3WAUA 1VKDA 5JOXA 3VSZA 3ZXKA 3C7OA 4AK6A 2YFTA 5FIXA 5FLWA 2AC1A 3WPVA 3LF7A 5C0PA 1PT2A 3LDRA 3WATA 3C7FA 2EXHA 2QQVA 1YIFA 3C2UA 4UDGA 4UDKE 2VDTA 5AY9A 3PIGA 3QEDA 3K1UA 5B6TA 4UDIA 3WPZA 5JOZA 5GLMA 3WN0A 3LEMA 4QQSA 3VT0A 2AEZA 3LIHA 3VT2A 4U6DA 2X8TA 4KC7A 3WMZA 3D61A 3OM2A 3R4ZA 4KC8A 3NQHA 3AKFA 1GYHA 2EXJA 5GLOA 2ADEA 1W2TA 1GYDB 1UV4A 5GLNA 4EQVA 3PIJA 5FKBA 1YI7A 1Y9MA 3D5YA 5GLRA 5A8DA 3LV4A 4O8NA 3AKIA 3OM4A 2QQUA 2YFRA 3VSFA 3AKGA 3KSTA 3OM5A 4N2RA 4UDKA 3WN2A 3U75A 1OYGA 1UYPA 3C7GA 3ZXJA 4COTA 3KF3A 1Y9GA 3D60A 2QQWA 3QZ4A 3WASA 3ZXLA 4FFIA 4FFGA 3U14A 3QEFA 3OM7A 5A7VB 1ST8A 5GLKA 5AYEA 5B6SA 1GYEB 2ADDA 4FFHA 2YFSA 3SC7X 4O8PA 5GLLA 2XQRA 4AK7A 5GLPA 3C7HA 3OM6A 3KF5A 4PVAA 2EXIA 3LIGA 3WMYA 3BYJA 3RWKX 3LDKA 4N1IA 3WPYA 3CU9A 5FMCA 5C2MA 5FMBA 4PVIA 3D5ZA 2B4WA 4NOVA 3UGGA 3UGHA 4UDJA
chains in the Genus database with same CATH topology
3BYKA 5AYCA 3TAWA 4ONZA 3QEEA 4N4BA 3C7EA 5FKCA 1WL7A 5GLQA 5ANNA 3BYNA 3QC2A 3R67A 4U6BA 4KCBA 4AK5A 2X8SA 4KMIA 3WPUA 1Y4WA 4N2ZA 5FMDA 3VT1A 4D47A 1Y7BA 3LFIA 5A8CA 5JOWA 3UGFA 5JOYA 2EXKA 4MLGA 2AEYA 3VSRA 3WN1A 4FFFA 5AYDA 3R4YA 5FK8A 2X8FA 3P2NA 1YRZA 5FK7A 3AKHA 4O8OA 3BYLA 4KCAA 3VSSA 1W18A 2OXBA 5A7VA 3WAUA 1VKDA 5JOXA 3VSZA 3ZXKA 3C7OA 4AK6A 2YFTA 5FIXA 5FLWA 2AC1A 3WPVA 3LF7A 5C0PA 1PT2A 3LDRA 3WATA 3C7FA 2EXHA 2QQVA 1YIFA 3C2UA 4UDGA 4UDKE 2VDTA 5AY9A 3PIGA 3QEDA 3K1UA 5B6TA 4UDIA 3WPZA 5JOZA 5GLMA 3WN0A 3LEMA 4QQSA 3VT0A 2AEZA 3LIHA 3VT2A 4U6DA 2X8TA 4KC7A 3WMZA 3D61A 3OM2A 3R4ZA 4KC8A 3NQHA 3AKFA 1GYHA 2EXJA 5GLOA 2ADEA 1W2TA 1GYDB 1UV4A 5GLNA 4EQVA 3PIJA 5FKBA 1YI7A 1Y9MA 3D5YA 5GLRA 5A8DA 3LV4A 4O8NA 3AKIA 3OM4A 2QQUA 2YFRA 3VSFA 3AKGA 3KSTA 3OM5A 4N2RA 4UDKA 3WN2A 3U75A 1OYGA 1UYPA 3C7GA 3ZXJA 4COTA 3KF3A 1Y9GA 3D60A 2QQWA 3QZ4A 3WASA 3ZXLA 4FFIA 4FFGA 3U14A 3QEFA 3OM7A 5A7VB 1ST8A 5GLKA 5AYEA 5B6SA 1GYEB 2ADDA 4FFHA 2YFSA 3SC7X 4O8PA 5GLLA 2XQRA 4AK7A 5GLPA 3C7HA 3OM6A 3KF5A 4PVAA 2EXIA 3LIGA 3WMYA 3BYJA 3RWKX 3LDKA 4N1IA 3WPYA 3CU9A 5FMCA 5FMBA 4PVIA 3D5ZA 2B4WA 4NOVA 3UGGA 3UGHA 4UDJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BYK A;  5AYC A;  3TAW A;  4ONZ A;  3QEE A;  4N4B A;  3C7E A;  5FKC A;  1WL7 A;  5GLQ A;  5ANN A;  3BYN A;  3QC2 A;  3R67 A;  4U6B A;  4KCB A;  4AK5 A;  2X8S A;  4KMI A;  3WPU A;  1Y4W A;  4N2Z A;  5FMD A;  3VT1 A;  4D47 A;  1Y7B A;  3LFI A;  5A8C A;  5JOW A;  3UGF A;  5JOY A;  2EXK A;  4MLG A;  2AEY A;  3VSR A;  3WN1 A;  4FFF A;  5AYD A;  3R4Y A;  5FK8 A;  2X8F A;  3P2N A;  1YRZ A;  5FK7 A;  3AKH A;  4O8O A;  3BYL A;  4KCA A;  3VSS A;  1W18 A;  2OXB A;  5A7V A;  3WAU A;  1VKD A;  5JOX A;  3VSZ A;  3ZXK A;  3C7O A;  4AK6 A;  2YFT A;  5FIX A;  5FLW A;  2AC1 A;  3WPV A;  3LF7 A;  5C0P A;  1PT2 A;  3LDR A;  3WAT A;  3C7F A;  2EXH A;  2QQV A;  1YIF A;  3C2U A;  4UDG A;  4UDK E;  2VDT A;  5AY9 A;  3PIG A;  3QED A;  3K1U A;  5B6T A;  4UDI A;  3WPZ A;  5JOZ A;  5GLM A;  3WN0 A;  3LEM A;  4QQS A;  3VT0 A;  2AEZ A;  3LIH A;  3VT2 A;  4U6D A;  2X8T A;  4KC7 A;  3WMZ A;  3D61 A;  3OM2 A;  3R4Z A;  4KC8 A;  3NQH A;  3AKF A;  1GYH A;  2EXJ A;  5GLO A;  2ADE A;  1W2T A;  1GYD B;  1UV4 A;  5GLN A;  4EQV A;  3PIJ A;  5FKB A;  1YI7 A;  1Y9M A;  3D5Y A;  5GLR A;  5A8D A;  3LV4 A;  4O8N A;  3AKI A;  3OM4 A;  2QQU A;  2YFR A;  3VSF A;  3AKG A;  3KST A;  3OM5 A;  4N2R A;  4UDK A;  3WN2 A;  3U75 A;  1OYG A;  1UYP A;  3C7G A;  3ZXJ A;  4COT A;  3KF3 A;  1Y9G A;  3D60 A;  2QQW A;  3QZ4 A;  3WAS A;  3ZXL A;  4FFI A;  4FFG A;  3U14 A;  3QEF A;  3OM7 A;  5A7V B;  1ST8 A;  5GLK A;  5AYE A;  5B6S A;  1GYE B;  2ADD A;  4FFH A;  2YFS A;  3SC7 X;  4O8P A;  5GLL A;  2XQR A;  4AK7 A;  5GLP A;  3C7H A;  3OM6 A;  3KF5 A;  4PVA A;  2EXI A;  3LIG A;  3WMY A;  3BYJ A;  3RWK X;  3LDK A;  4N1I A;  3WPY A;  3CU9 A;  5FMC A;  5FMB A;  4PVI A;  3D5Z A;  2B4W A;  4NOV A;  3UGG A;  3UGH A;  4UDJ A; 
#chains in the Genus database with same CATH topology
 3BYK A;  5AYC A;  3TAW A;  4ONZ A;  3QEE A;  4N4B A;  3C7E A;  5FKC A;  1WL7 A;  5GLQ A;  5ANN A;  3BYN A;  3QC2 A;  3R67 A;  4U6B A;  4KCB A;  1TL2 A;  4AK5 A;  2X8S A;  4KMI A;  3WPU A;  1Y4W A;  4N2Z A;  5FMD A;  3VT1 A;  4D47 A;  1Y7B A;  3LFI A;  5A8C A;  5JOW A;  3UGF A;  5JOY A;  2EXK A;  4MLG A;  2AEY A;  3VSR A;  3WN1 A;  4FFF A;  5AYD A;  3R4Y A;  5FK8 A;  2X8F A;  3P2N A;  1YRZ A;  5FK7 A;  3AKH A;  4O8O A;  3BYL A;  4KCA A;  3VSS A;  1W18 A;  2OXB A;  5A7V A;  3WAU A;  1VKD A;  5JOX A;  3VSZ A;  3ZXK A;  3C7O A;  4AK6 A;  2YFT A;  5FIX A;  5FLW A;  2AC1 A;  3WPV A;  3LF7 A;  5C0P A;  1PT2 A;  3LDR A;  3WAT A;  3C7F A;  2EXH A;  2QQV A;  1YIF A;  3C2U A;  4UDG A;  4UDK E;  2VDT A;  5AY9 A;  3PIG A;  3QED A;  3K1U A;  5B6T A;  4UDI A;  3WPZ A;  5JOZ A;  5GLM A;  3WN0 A;  3LEM A;  4QQS A;  3VT0 A;  2AEZ A;  3LIH A;  3VT2 A;  4U6D A;  2X8T A;  4KC7 A;  3WMZ A;  3D61 A;  3OM2 A;  3R4Z A;  4KC8 A;  3NQH A;  3AKF A;  1GYH A;  2EXJ A;  5GLO A;  2ADE A;  1W2T A;  1GYD B;  1UV4 A;  5GLN A;  4EQV A;  3PIJ A;  5FKB A;  1YI7 A;  1Y9M A;  3D5Y A;  5GLR A;  5A8D A;  3LV4 A;  4O8N A;  3AKI A;  3OM4 A;  2QQU A;  2YFR A;  3VSF A;  3AKG A;  3KST A;  3OM5 A;  4N2R A;  4UDK A;  3WN2 A;  3U75 A;  1OYG A;  1UYP A;  3C7G A;  3ZXJ A;  4COT A;  3KF3 A;  1Y9G A;  3D60 A;  2QQW A;  3QZ4 A;  3WAS A;  3ZXL A;  4FFI A;  4FFG A;  3U14 A;  3QEF A;  3OM7 A;  5A7V B;  1ST8 A;  5GLK A;  5AYE A;  5B6S A;  1GYE B;  2ADD A;  4FFH A;  2YFS A;  3SC7 X;  4O8P A;  5GLL A;  2XQR A;  4AK7 A;  5GLP A;  3C7H A;  3OM6 A;  3KF5 A;  4PVA A;  2EXI A;  3LIG A;  3WMY A;  3BYJ A;  3RWK X;  3LDK A;  4N1I A;  3WPY A;  3CU9 A;  5FMC A;  5C2M A;  5FMB A;  4PVI A;  3D5Z A;  2B4W A;  4NOV A;  3UGG A;  3UGH A;  4UDJ A; 
#chains in the Genus database with same CATH homology
 3BYK A;  5AYC A;  3TAW A;  4ONZ A;  3QEE A;  4N4B A;  3C7E A;  5FKC A;  1WL7 A;  5GLQ A;  5ANN A;  3BYN A;  3QC2 A;  3R67 A;  4U6B A;  4KCB A;  4AK5 A;  2X8S A;  4KMI A;  3WPU A;  1Y4W A;  4N2Z A;  5FMD A;  3VT1 A;  4D47 A;  1Y7B A;  3LFI A;  5A8C A;  5JOW A;  3UGF A;  5JOY A;  2EXK A;  4MLG A;  2AEY A;  3VSR A;  3WN1 A;  4FFF A;  5AYD A;  3R4Y A;  5FK8 A;  2X8F A;  3P2N A;  1YRZ A;  5FK7 A;  3AKH A;  4O8O A;  3BYL A;  4KCA A;  3VSS A;  1W18 A;  2OXB A;  5A7V A;  3WAU A;  1VKD A;  5JOX A;  3VSZ A;  3ZXK A;  3C7O A;  4AK6 A;  2YFT A;  5FIX A;  5FLW A;  2AC1 A;  3WPV A;  3LF7 A;  5C0P A;  1PT2 A;  3LDR A;  3WAT A;  3C7F A;  2EXH A;  2QQV A;  1YIF A;  3C2U A;  4UDG A;  4UDK E;  2VDT A;  5AY9 A;  3PIG A;  3QED A;  3K1U A;  5B6T A;  4UDI A;  3WPZ A;  5JOZ A;  5GLM A;  3WN0 A;  3LEM A;  4QQS A;  3VT0 A;  2AEZ A;  3LIH A;  3VT2 A;  4U6D A;  2X8T A;  4KC7 A;  3WMZ A;  3D61 A;  3OM2 A;  3R4Z A;  4KC8 A;  3NQH A;  3AKF A;  1GYH A;  2EXJ A;  5GLO A;  2ADE A;  1W2T A;  1GYD B;  1UV4 A;  5GLN A;  4EQV A;  3PIJ A;  5FKB A;  1YI7 A;  1Y9M A;  3D5Y A;  5GLR A;  5A8D A;  3LV4 A;  4O8N A;  3AKI A;  3OM4 A;  2QQU A;  2YFR A;  3VSF A;  3AKG A;  3KST A;  3OM5 A;  4N2R A;  4UDK A;  3WN2 A;  3U75 A;  1OYG A;  1UYP A;  3C7G A;  3ZXJ A;  4COT A;  3KF3 A;  1Y9G A;  3D60 A;  2QQW A;  3QZ4 A;  3WAS A;  3ZXL A;  4FFI A;  4FFG A;  3U14 A;  3QEF A;  3OM7 A;  5A7V B;  1ST8 A;  5GLK A;  5AYE A;  5B6S A;  1GYE B;  2ADD A;  4FFH A;  2YFS A;  3SC7 X;  4O8P A;  5GLL A;  2XQR A;  4AK7 A;  5GLP A;  3C7H A;  3OM6 A;  3KF5 A;  4PVA A;  2EXI A;  3LIG A;  3WMY A;  3BYJ A;  3RWK X;  3LDK A;  4N1I A;  3WPY A;  3CU9 A;  5FMC A;  5FMB A;  4PVI A;  3D5Z A;  2B4W A;  4NOV A;  3UGG A;  3UGH A;  4UDJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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