3OMSA

Putative 3-demethylubiquinone-9 3-methyltransferase, phnb protein, from bacillus cereus.
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
129
structure length
129
Chain Sequence
QKITTFLMFEGKAEEAMNFYTSLFDQSEIVSISRYDENGPGKEGTVIHATFTLNGQEFMCIDSYVNHNFTFTPAMSLYVTCETEEEIDTVFHKLAQDGAILMPLGSYPFSKKFGWLNDKYGVSWQLTLA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords PhnB protein
publication title X-ray crystal structure of putative 3-demethylubiquinone-9 3-methyltransferase, PhnB protein, from Bacillus cereus.
rcsb
source organism Bacillus cereus
total genus 30
structure length 129
sequence length 129
ec nomenclature
pdb deposition date 2010-08-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF06983 3-dmu-9_3-mt 3-demethylubiquinone-9 3-methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.720.100 Alpha Beta 2-Layer Sandwich Signal recognition particle alu RNA binding heterodimer, srp9/1 Signal recognition particle alu RNA binding heterodimer, srp9/1 3omsA01
3.30.720.110 Alpha Beta 2-Layer Sandwich Signal recognition particle alu RNA binding heterodimer, srp9/1 Signal recognition particle alu RNA binding heterodimer, srp9/1 3omsA02
3OMSA 2KJZA 3VCXA 3ITWA 3BT3A 3SK1A 1U7IA
chains in the Genus database with same CATH superfamily
3PE4A 2KJZA 3OMSA 1E8OA 4CDRA 5BNWA 4UYJB 2RSFA 3BT3A 3TU3B 4UYKB 2FJDB 4XIFA 1914A 1QMOE 3GYXB 1JNRB 3VCXA 1X4RA 4UYKA 2K4NA 3ITWA 4GZ6A 4GYWA 4N3AA 1JNZB 4N39A 5AOXB 3SK1A 5C1DA 4UYJA 2FJEB 4AY5A 4GZ3A 2DK6A 3V3LA 1U7IA 3TAXA 1UJRA 4GYYA 2X5TA 2X5HA 4AKXB 2FFGA 2W9JA 5AOXA 2X5GA 4GZ5A 4AY6A 1E8OB 4N3CA 2FJBB 2FJAB 3PE3A 4N3BA 4XI9A 2A90A
chains in the Genus database with same CATH topology
3PE4A 2KJZA 3OMSA 1E8OA 4CDRA 5BNWA 4UYJB 2RSFA 3BT3A 3TU3B 4UYKB 2FJDB 4XIFA 1914A 1QMOE 3GYXB 1JNRB 3VCXA 1X4RA 4UYKA 2K4NA 3ITWA 4GZ6A 4GYWA 4N3AA 1JNZB 4N39A 5AOXB 3SK1A 5C1DA 4UYJA 2FJEB 4AY5A 4GZ3A 2DK6A 3V3LA 1U7IA 3TAXA 1UJRA 4GYYA 2X5TA 2X5HA 4AKXB 2FFGA 2W9JA 5AOXA 2X5GA 4GZ5A 4AY6A 1E8OB 4N3CA 2FJBB 2FJAB 3PE3A 4N3BA 4XI9A 2A90A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OMS A;  2KJZ A;  3VCX A;  3ITW A;  3BT3 A;  3SK1 A;  1U7I A; 
#chains in the Genus database with same CATH topology
 3PE4 A;  2KJZ A;  3OMS A;  1E8O A;  4CDR A;  5BNW A;  4UYJ B;  2RSF A;  3BT3 A;  3TU3 B;  4UYK B;  2FJD B;  4XIF A;  1914 A;  1QMO E;  3GYX B;  1JNR B;  3VCX A;  1X4R A;  4UYK A;  2K4N A;  3ITW A;  4GZ6 A;  4GYW A;  4N3A A;  1JNZ B;  4N39 A;  5AOX B;  3SK1 A;  5C1D A;  4UYJ A;  2FJE B;  4AY5 A;  4GZ3 A;  2DK6 A;  3V3L A;  1U7I A;  3TAX A;  1UJR A;  4GYY A;  2X5T A;  2X5H A;  4AKX B;  2FFG A;  2W9J A;  5AOX A;  2X5G A;  4GZ5 A;  4AY6 A;  1E8O B;  4N3C A;  2FJB B;  2FJA B;  3PE3 A;  4N3B A;  4XI9 A;  2A90 A; 
#chains in the Genus database with same CATH homology
 3PE4 A;  2KJZ A;  3OMS A;  1E8O A;  4CDR A;  5BNW A;  4UYJ B;  2RSF A;  3BT3 A;  3TU3 B;  4UYK B;  2FJD B;  4XIF A;  1914 A;  1QMO E;  3GYX B;  1JNR B;  3VCX A;  1X4R A;  4UYK A;  2K4N A;  3ITW A;  4GZ6 A;  4GYW A;  4N3A A;  1JNZ B;  4N39 A;  5AOX B;  3SK1 A;  5C1D A;  4UYJ A;  2FJE B;  4AY5 A;  4GZ3 A;  2DK6 A;  3V3L A;  1U7I A;  3TAX A;  1UJR A;  4GYY A;  2X5T A;  2X5H A;  4AKX B;  2FFG A;  2W9J A;  5AOX A;  2X5G A;  4GZ5 A;  4AY6 A;  1E8O B;  4N3C A;  2FJB B;  2FJA B;  3PE3 A;  4N3B A;  4XI9 A;  2A90 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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