3OOLA

I-scei complexed with c/g+4 dna substrate
Total Genus 66
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
sequence length
223
structure length
223
Chain Sequence
NIKKNQVMNLGPNSKLLKEYKSQLIELNIEQFEAGIGLILGDAYIRSRDEGKTYCMQFEWKNKAYMDHVCLLYDQWVLSPPHKKERVNHLGNLVITWGAQTFKHQAFNKLANLFIVNNKKTIPNNLVENYLTPMSLAYWFMDDGGKWDYNKNSTNKSIVLNTQSFTFEEVEYLVKGLRNKFQLNCYVKINKNKPIIYIDSMSYLIFYNLIKPYLIPQMMYKLP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords Intron encoded endonuclease I-SceI
publication title Evolution of I-SceI Homing Endonucleases with Increased DNA Recognition Site Specificity.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 66
structure length 223
sequence length 223
ec nomenclature ec 3.1.-.-:
pdb deposition date 2010-08-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03161 LAGLIDADG_2 LAGLIDADG DNA endonuclease family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 3oolA01
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 3oolA02
5AKNA 3OORA 5E63A 2VBJB 2VBNA 4UT0A 2I3PA 4YHXA 3R7PA 4AAEA 1G9YA 2VBOB 1T9JA 5E5SA 3C0XA 1EF0A 1P8KZ 3MXBB 2VBLB 2VS7A 1MOWA 5A72A 2FLDA 4LOXA 3UVFA 1UM2A 4UN8A 4UN8G 4AADA 1LWSA 5AK9A 4AQXA 5E5OA 4YITA 3MISA 1U0CA 4EFJA 1N3FA 2XE0B 1AF5A 1LWTA 1BP7A 1T9IA 4UNCA 2CW8A 5AKFA 1U0DA 4YISA 3OOLA 4D6NA 2VBNB 3HYJA 3EH8A 2CW7A 4UN9A 5A0MA 4UN9G 4Z1XA 1G9ZA 1DFAA 1VDEA 3FD2A 2VBJA 5A78A 1R7MA 2DCHX 4LQ0A 3E54A 4AAGA 2EX5A 5A74A 3MX9A 2O7MA 4D6OA 3MIPA 3C0WA 3MXBA 2VBLA 2QOJZ 4AQUA 4UNAA 5A0WA 5A77A 3QQYA 2I3QA 1B24A 5E67A 1JVAA 4Z20A 4UNBA 3KO2A 2VS8A 1M5XA 1N3EA 4AAFA 3MXAA 2XE0A 4AABA 4UN7A 1DQ3A 4UN7G 5A0MB 2VBOA 2AB5A 4Z1ZA 3HYIA 5AKMA
chains in the Genus database with same CATH superfamily
5AKNA 3OORA 5E63A 2VBJB 2VBNA 4UT0A 2I3PA 4YHXA 2F4LA 3R7PA 4AAEA 1G9YA 2VBOB 1T9JA 5E5SA 3C0XA 1EF0A 1P8KZ 3MXBB 2VBLB 2VS7A 1MOWA 5A72A 2FLDA 4LOXA 3UVFA 1UM2A 4UN8A 4UN8G 4AADA 1LWSA 5AK9A 4AQXA 5E5OA 4YITA 3MISA 1U0CA 4KZSA 4EFJA 1N3FA 2XE0B 1AF5A 1LWTA 1BP7A 1T9IA 4UNCA 2CW8A 5AKFA 1U0DA 4YISA 3OOLA 4D6NA 2VBNB 3HYJA 3EH8A 2CW7A 4UN9A 5A0MA 4UN9G 4Z1XA 1G9ZA 1DFAA 1VDEA 3FD2A 2VBJA 5A78A 1R7MA 2DCHX 4LQ0A 3E54A 4AAGA 2EX5A 5A74A 3MX9A 2O7MA 4D6OA 3MIPA 3C0WA 3MXBA 2VBLA 2QOJZ 4AQUA 4UNAA 5A0WA 5A77A 3QQYA 2I3QA 1B24A 5E67A 1JVAA 4Z20A 4UNBA 3KO2A 2VS8A 1M5XA 1N3EA 4AAFA 3MXAA 2XE0A 4AABA 4UN7A 1DQ3A 4UN7G 5A0MB 2VBOA 2AB5A 4Z1ZA 3HYIA 5AKMA
chains in the Genus database with same CATH topology
5AKNA 3OORA 5E63A 2VBJB 2VBNA 4UT0A 2I3PA 4YHXA 3R7PA 4AAEA 1G9YA 2VBOB 1T9JA 5E5SA 3C0XA 1EF0A 1P8KZ 3MXBB 2VBLB 2VS7A 1MOWA 5A72A 2FLDA 4LOXA 3UVFA 1UM2A 4UN8A 4UN8G 4AADA 1LWSA 5AK9A 4AQXA 5E5OA 4YITA 3MISA 1U0CA 4EFJA 1N3FA 2XE0B 1AF5A 1LWTA 1BP7A 1T9IA 4UNCA 2CW8A 5AKFA 1U0DA 4YISA 3OOLA 4D6NA 2VBNB 3HYJA 3EH8A 2CW7A 4UN9A 5A0MA 4UN9G 4Z1XA 1G9ZA 1DFAA 1VDEA 3FD2A 2VBJA 5A78A 1R7MA 2DCHX 4LQ0A 3E54A 4AAGA 2EX5A 5A74A 3MX9A 2O7MA 4D6OA 3MIPA 3C0WA 3MXBA 2VBLA 2QOJZ 4AQUA 4UNAA 5A0WA 5A77A 3QQYA 2I3QA 1B24A 5E67A 1JVAA 4Z20A 4UNBA 3KO2A 2VS8A 1M5XA 1N3EA 4AAFA 3MXAA 2XE0A 4AABA 4UN7A 1DQ3A 4UN7G 5A0MB 2VBOA 2AB5A 4Z1ZA 3HYIA 5AKMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AKN A;  3OOR A;  5E63 A;  2VBJ B;  2VBN A;  4UT0 A;  2I3P A;  4YHX A;  3R7P A;  4AAE A;  1G9Y A;  2VBO B;  1T9J A;  5E5S A;  3C0X A;  1EF0 A;  1P8K Z;  3MXB B;  2VBL B;  2VS7 A;  1MOW A;  5A72 A;  2FLD A;  4LOX A;  3UVF A;  1UM2 A;  4UN8 A;  4UN8 G;  4AAD A;  1LWS A;  5AK9 A;  4AQX A;  5E5O A;  4YIT A;  3MIS A;  1U0C A;  4EFJ A;  1N3F A;  2XE0 B;  1AF5 A;  1LWT A;  1BP7 A;  1T9I A;  4UNC A;  2CW8 A;  5AKF A;  1U0D A;  4YIS A;  3OOL A;  4D6N A;  2VBN B;  3HYJ A;  3EH8 A;  2CW7 A;  4UN9 A;  5A0M A;  4UN9 G;  4Z1X A;  1G9Z A;  1DFA A;  1VDE A;  3FD2 A;  2VBJ A;  5A78 A;  1R7M A;  2DCH X;  4LQ0 A;  3E54 A;  4AAG A;  2EX5 A;  5A74 A;  3MX9 A;  2O7M A;  4D6O A;  3MIP A;  3C0W A;  3MXB A;  2VBL A;  2QOJ Z;  4AQU A;  4UNA A;  5A0W A;  5A77 A;  3QQY A;  2I3Q A;  1B24 A;  5E67 A;  1JVA A;  4Z20 A;  4UNB A;  3KO2 A;  2VS8 A;  1M5X A;  1N3E A;  4AAF A;  3MXA A;  2XE0 A;  4AAB A;  4UN7 A;  1DQ3 A;  4UN7 G;  5A0M B;  2VBO A;  2AB5 A;  4Z1Z A;  3HYI A;  5AKM A; 
#chains in the Genus database with same CATH topology
 5AKN A;  3OOR A;  5E63 A;  2VBJ B;  2VBN A;  4UT0 A;  2I3P A;  4YHX A;  2F4L A;  3R7P A;  4AAE A;  1G9Y A;  2VBO B;  1T9J A;  5E5S A;  3C0X A;  1EF0 A;  1P8K Z;  3MXB B;  2VBL B;  2VS7 A;  1MOW A;  5A72 A;  2FLD A;  4LOX A;  3UVF A;  1UM2 A;  4UN8 A;  4UN8 G;  4AAD A;  1LWS A;  5AK9 A;  4AQX A;  5E5O A;  4YIT A;  3MIS A;  1U0C A;  4KZS A;  4EFJ A;  1N3F A;  2XE0 B;  1AF5 A;  1LWT A;  1BP7 A;  1T9I A;  4UNC A;  2CW8 A;  5AKF A;  1U0D A;  4YIS A;  3OOL A;  4D6N A;  2VBN B;  3HYJ A;  3EH8 A;  2CW7 A;  4UN9 A;  5A0M A;  4UN9 G;  4Z1X A;  1G9Z A;  1DFA A;  1VDE A;  3FD2 A;  2VBJ A;  5A78 A;  1R7M A;  2DCH X;  4LQ0 A;  3E54 A;  4AAG A;  2EX5 A;  5A74 A;  3MX9 A;  2O7M A;  4D6O A;  3MIP A;  3C0W A;  3MXB A;  2VBL A;  2QOJ Z;  4AQU A;  4UNA A;  5A0W A;  5A77 A;  3QQY A;  2I3Q A;  1B24 A;  5E67 A;  1JVA A;  4Z20 A;  4UNB A;  3KO2 A;  2VS8 A;  1M5X A;  1N3E A;  4AAF A;  3MXA A;  2XE0 A;  4AAB A;  4UN7 A;  1DQ3 A;  4UN7 G;  5A0M B;  2VBO A;  2AB5 A;  4Z1Z A;  3HYI A;  5AKM A; 
#chains in the Genus database with same CATH homology
 5AKN A;  3OOR A;  5E63 A;  2VBJ B;  2VBN A;  4UT0 A;  2I3P A;  4YHX A;  3R7P A;  4AAE A;  1G9Y A;  2VBO B;  1T9J A;  5E5S A;  3C0X A;  1EF0 A;  1P8K Z;  3MXB B;  2VBL B;  2VS7 A;  1MOW A;  5A72 A;  2FLD A;  4LOX A;  3UVF A;  1UM2 A;  4UN8 A;  4UN8 G;  4AAD A;  1LWS A;  5AK9 A;  4AQX A;  5E5O A;  4YIT A;  3MIS A;  1U0C A;  4EFJ A;  1N3F A;  2XE0 B;  1AF5 A;  1LWT A;  1BP7 A;  1T9I A;  4UNC A;  2CW8 A;  5AKF A;  1U0D A;  4YIS A;  3OOL A;  4D6N A;  2VBN B;  3HYJ A;  3EH8 A;  2CW7 A;  4UN9 A;  5A0M A;  4UN9 G;  4Z1X A;  1G9Z A;  1DFA A;  1VDE A;  3FD2 A;  2VBJ A;  5A78 A;  1R7M A;  2DCH X;  4LQ0 A;  3E54 A;  4AAG A;  2EX5 A;  5A74 A;  3MX9 A;  2O7M A;  4D6O A;  3MIP A;  3C0W A;  3MXB A;  2VBL A;  2QOJ Z;  4AQU A;  4UNA A;  5A0W A;  5A77 A;  3QQY A;  2I3Q A;  1B24 A;  5E67 A;  1JVA A;  4Z20 A;  4UNB A;  3KO2 A;  2VS8 A;  1M5X A;  1N3E A;  4AAF A;  3MXA A;  2XE0 A;  4AAB A;  4UN7 A;  1DQ3 A;  4UN7 G;  5A0M B;  2VBO A;  2AB5 A;  4Z1Z A;  3HYI A;  5AKM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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