3OSJA

X-ray structure of phycobilisome lcm core-membrane linker polypeptide (fragment 254-400) from synechocystis sp. pcc 6803, northeast structural genomics consortium target sgr209c
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
135
structure length
135
Chain Sequence
QKYAMKPGLSALEKNAVIKAAYRQIFERDITKAYSQSISYLESQVRNGDISMKEFVRRLAKSPLYRKQFFEPFINSRALELAFRHILGRGPSSREEVQKYFSIVSSGGLPALVDALVDSQEYADYFGEETVPYLR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Phycobilisome LCM core-membrane linker polypeptide
publication title Northeast Structural Genomics Consortium Target SgR209C
rcsb
molecule tags Protein binding
total genus 47
structure length 135
sequence length 135
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2010-09-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00427 PBS_linker_poly Phycobilisome Linker polypeptide
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3130.20 Mainly Alpha Orthogonal Bundle serine acetyltransferase, domain 1 serine acetyltransferase, domain 1 3osjA01
3OSJA 2L3WA 2L06A 3NPHB 3OHWA 2KY4A 3PRUA 2L8VA
chains in the Genus database with same CATH superfamily
3OSJA 2L3WA 1SSMA 2L06A 3NPHB 4N69A 4H7OA 3F1XA 1SSQA 3MC4A 1T3DA 3P1BA 2L8VA 3P47A 4HZCA 3Q1XA 4HZDA 4N6BA 1SSTA 2KY4A 3PRUA 4N6AA 3OHWA 1S80A 3GVDA
chains in the Genus database with same CATH topology
3OSJA 2L3WA 1SSMA 2L06A 3NPHB 4N69A 4H7OA 3F1XA 1SSQA 3MC4A 1T3DA 3P1BA 2L8VA 3P47A 4HZCA 3Q1XA 4HZDA 4N6BA 1SSTA 2KY4A 3PRUA 4N6AA 3OHWA 1S80A 3GVDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OSJ A;  2L3W A;  2L06 A;  3NPH B;  3OHW A;  2KY4 A;  3PRU A;  2L8V A; 
#chains in the Genus database with same CATH topology
 3OSJ A;  2L3W A;  1SSM A;  2L06 A;  3NPH B;  4N69 A;  4H7O A;  3F1X A;  1SSQ A;  3MC4 A;  1T3D A;  3P1B A;  2L8V A;  3P47 A;  4HZC A;  3Q1X A;  4HZD A;  4N6B A;  1SST A;  2KY4 A;  3PRU A;  4N6A A;  3OHW A;  1S80 A;  3GVD A; 
#chains in the Genus database with same CATH homology
 3OSJ A;  2L3W A;  1SSM A;  2L06 A;  3NPH B;  4N69 A;  4H7O A;  3F1X A;  1SSQ A;  3MC4 A;  1T3D A;  3P1B A;  2L8V A;  3P47 A;  4HZC A;  3Q1X A;  4HZD A;  4N6B A;  1SST A;  2KY4 A;  3PRU A;  4N6A A;  3OHW A;  1S80 A;  3GVD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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