3OURB

Crystal structure of complex between eiia and a novel pyruvate decarboxylase
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
150
structure length
150
Chain Sequence
AIEIIAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKMVAPVNGTIGKIFETNHAFSIESDDGVELFVHFGIDTVELKGEGFTRIAEEGQTVKAGDTVIEFDLALLEEKAKSTLTPVVISNMDEIKELNKLSGSVVVGETPVLRVTK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase/transferase
molecule keywords UPF0255 protein VV1_0328
publication title FrsA functions as a cofactor-independent decarboxylase to control metabolic flux
pubmed doi rcsb
source organism Vibrio vulnificus
total genus 35
structure length 150
sequence length 150
chains with identical sequence D, F, H
ec nomenclature
pdb deposition date 2010-09-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.70.10 Mainly Beta Distorted Sandwich Glucose Permease (Domain IIA) Glucose Permease (Domain IIA) 3ourB00
4RNYA 5KVPA 1O2FA 2GPRA 3IT7A 4QP5A 1GLAF 3UZ0B 4BH5A 1GLEF 5B0HA 1GLCF 2MP0B 2B0PA 4JBWM 1F3GA 4LXCA 4ZYBA 3NYYA 1GLDF 3IT5A 4QPBA 1F3ZA 2HSIA 1GGRA 2GU1A 1AX3A 1GPRA 2B13A 2B44A 1GLBF 3TUFB 1QWYA 3OURB 3SLUA 4RNZA 3CSQA 2F3GA
chains in the Genus database with same CATH superfamily
4RNYA 5KVPA 1O2FA 2GPRA 3IT7A 4QP5A 1GLAF 3UZ0B 4BH5A 1GLEF 5B0HA 1GLCF 2MP0B 2B0PA 4JBWM 1F3GA 4LXCA 4ZYBA 3NYYA 1GLDF 3IT5A 4QPBA 1F3ZA 2HSIA 1GGRA 2GU1A 1AX3A 1GPRA 2B13A 2B44A 1GLBF 3TUFB 1QWYA 3OURB 3SLUA 4RNZA 3CSQA 2F3GA
chains in the Genus database with same CATH topology
4RNYA 5KVPA 1O2FA 2GPRA 3IT7A 4QP5A 1GLAF 3UZ0B 4BH5A 1GLEF 5B0HA 1GLCF 2MP0B 2B0PA 4JBWM 1F3GA 4LXCA 4ZYBA 3NYYA 1GLDF 3IT5A 4QPBA 1F3ZA 2HSIA 1GGRA 2GU1A 1AX3A 1GPRA 2B13A 2B44A 1GLBF 3TUFB 1QWYA 3OURB 3SLUA 4RNZA 3CSQA 2F3GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RNY A;  5KVP A;  1O2F A;  2GPR A;  3IT7 A;  4QP5 A;  1GLA F;  3UZ0 B;  4BH5 A;  1GLE F;  5B0H A;  1GLC F;  2MP0 B;  2B0P A;  4JBW M;  1F3G A;  4LXC A;  4ZYB A;  3NYY A;  1GLD F;  3IT5 A;  4QPB A;  1F3Z A;  2HSI A;  1GGR A;  2GU1 A;  1AX3 A;  1GPR A;  2B13 A;  2B44 A;  1GLB F;  3TUF B;  1QWY A;  3OUR B;  3SLU A;  4RNZ A;  3CSQ A;  2F3G A; 
#chains in the Genus database with same CATH topology
 4RNY A;  5KVP A;  1O2F A;  2GPR A;  3IT7 A;  4QP5 A;  1GLA F;  3UZ0 B;  4BH5 A;  1GLE F;  5B0H A;  1GLC F;  2MP0 B;  2B0P A;  4JBW M;  1F3G A;  4LXC A;  4ZYB A;  3NYY A;  1GLD F;  3IT5 A;  4QPB A;  1F3Z A;  2HSI A;  1GGR A;  2GU1 A;  1AX3 A;  1GPR A;  2B13 A;  2B44 A;  1GLB F;  3TUF B;  1QWY A;  3OUR B;  3SLU A;  4RNZ A;  3CSQ A;  2F3G A; 
#chains in the Genus database with same CATH homology
 4RNY A;  5KVP A;  1O2F A;  2GPR A;  3IT7 A;  4QP5 A;  1GLA F;  3UZ0 B;  4BH5 A;  1GLE F;  5B0H A;  1GLC F;  2MP0 B;  2B0P A;  4JBW M;  1F3G A;  4LXC A;  4ZYB A;  3NYY A;  1GLD F;  3IT5 A;  4QPB A;  1F3Z A;  2HSI A;  1GGR A;  2GU1 A;  1AX3 A;  1GPR A;  2B13 A;  2B44 A;  1GLB F;  3TUF B;  1QWY A;  3OUR B;  3SLU A;  4RNZ A;  3CSQ A;  2F3G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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