3OW2H

Crystal structure of enhanced macrolide bound to 50s ribosomal subunit
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
167
structure length
156
Chain Sequence
KPGAMYRNSSKPAYTRREYISGIPGKKIAQFDMGNNGAGPTYPAQVELVVEKPVQIRHNALEAARVAANRYVQNSGAAANYKFRIRKFPFHVIRENKDGMRAPFGKPVGTAARVHGANHIFIAWVNPDPNVEEAWRRAKMKVTPTINIDSSPAGNA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S RIBOSOMAL RNA
total genus 27
structure length 156
sequence length 167
ec nomenclature
pdb deposition date 2010-09-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 3ow2H00
1QVFH 3CCQH 5DM7J 1Q7YJ 5H1SO 1VQLH 1YJ9H 1Q82J 1QVGH 3J7ZM 1YHQH 4IOAJ 4WCEJ 1VQPH 3CCEH 1Q86J 3CMAH 1YJNH 3CCUH 1S72H 2ZJRJ 3I56H 1KD1J 1NJIJ 1M90J 5MLCO 1YITH 3DLLJ 4WF9J 3CC2H 3PIPJ 1VQ4H 3CD6H 5GADN 3I55H 3CCLH 1K8AJ 5HL7J 3CCSH 3OW2H 3G4SH 3CCMH 1KC8J 5JVGJ 1JJ2H 5JVHJ 2ZJQJ 4WFNJ 5GAEN 1Q81J 1K9MJ 4U67J 4WFAJ 5AN9F 3PIOJ 3G71H 3CC7H 4IO9J 1YI2H 2QEXH 2OTJH 1VQOH 5DM6J 1VQ9H 3CXCH 3CCVH 3CC4H 4WFBJ 1N8RJ 1WKIA 1K73J 3CPWH 3CCJH 1VQ5H 1YIJH 4UY8M 1VQ8H 1VQNH 5GAGN 3G6EH 1Y69K 1VQMH 3CCRH 2ZJPJ 1VQ6H 2PA2A 2QA4H 1YJWH 3CF5J 1VQ7H 3CMEH 5GAHN 1W2BH 1M1KJ 2OTLH 1KQSH 1VQKH 4IOCJ
chains in the Genus database with same CATH superfamily
1QVFH 3WO0A 4IOCJ 3CCQH 1YTDA 5DM7J 1Q7YJ 5H1SO 2W3RB 1AZYA 1VQLH 1FFUB 1YJ9H 3NVVC 1NVIE 3FAHA 1Q82J 1QVGH 3J7ZM 4USAA 4ZOHA 1YHQH 3B9JC 4IOAJ 3NVWC 3L4PA 2I14A 3TQVA 4KWWA 4WCEJ 1VQPH 1OTPA 4AP8A 2QIEA 3WO1A 3CCEH 3ETRC 1Q86J 1QPOA 2W55B 3CMAH 1YJNH 5HULA 3AM9A 4C80A 3CCUH 1S72H 2J0FA 1VLBA 3L0GA 2ZJRJ 2WK5A 1ZXIB 4I9AA 3RPFA 1YTKA 3I56H 1KD1J 2B7NA 1NJIJ 5HUOA 1QPRA 3C2VA 1FFVB 3C2OA 4YYYA 3FC4A 1M90J 5MLCO 1RM6A 1SIJA 4EAFA 1YITH 2W3SB 3DLLJ 4WF9J 2B7QA 2Q5WE 1QAPA 3CC2H 4LHMA 1VQKH 1YTEA 3PIPJ 1VQ4H 1N61B 3CD6H 3WNZA 2DSJA 1N5WB 5GADN 4KWVA 4GA5A 2OMDA 1NVJA 4GA4A 3I55H 1DGJA 3CCLH 1K8AJ 2I1OA 1FMAE 5HL7J 3CCSH 3OW2H 2W54B 1VDVA 3G4SH 2TPTA 3CCMH 5JVGJ 1KC8J 4US9A 1JJ2H 5JVHJ 3C2EA 4YEKA 2ZJQJ 3NVZC 4WFNJ 5GAEN 1V97A 1Q81J 1K9MJ 2B7PA 4U67J 3GNNA 4WFAJ 5AN9F 1BRWA 2WK6A 3AMZA 3NS1C 3PIOJ 3G71H 1WYGA 3CC7H 1FM0E 4IO9J 1N60B 1YI2H 5HUPA 2QEXH 1X1OA 4GA6A 1VQOH 2OTJH 1QPQA 5DM6J 1VQ9H 1O4UA 3CXCH 3CCVH 5AYZA 3CC4H 2E3TA 4C7ZA 3NVYC 3EUB4 1N8RJ 1WKIA 1N63B 3C2RA 5AYXA 5EY3A 1K73J 3CCJH 1JROB 3CPWH 3NRZC 5MPOC 5EP8A 1QPNA 5AYYA 1VQ5H 1YIJH 4UY8M 1VQ8H 1VQNH 1N62B 5GAGN 3G6EH 3VMMA 1Y69K 1VQMH 3CCRH 3C2FA 2WP4A 4XR5A 2ZJPJ 4X46A 4US8A 1VQ6H 2PA2A 1SB3A 2QA4H 3BIIE 1YJWH 3CF5J 4C7YA 1FIQC 4EADA 1VQ7H 3AN1A 3PAJA 3H5QA 1FO4A 3CMEH 2JBMA 5GAHN 1JRPB 1W2BH 1UOUA 1M1KJ 2OTLH 1KQSH 1N5XA 4WFBJ 3SR6C
chains in the Genus database with same CATH topology
1QVFH 3CCQH 5DM7J 1Q7YJ 5H1SO 1VQLH 1YJ9H 1Q82J 1QVGH 3J7ZM 1YHQH 4IOAJ 4WCEJ 1VQPH 3CCEH 1Q86J 3CMAH 1YJNH 3CCUH 1S72H 2ZJRJ 3I56H 1KD1J 1NJIJ 1M90J 5MLCO 1YITH 3DLLJ 4WF9J 3CC2H 3PIPJ 1VQ4H 3CD6H 5GADN 3I55H 3CCLH 1K8AJ 5HL7J 3CCSH 3OW2H 3G4SH 3CCMH 1KC8J 5JVGJ 1JJ2H 5JVHJ 2ZJQJ 4WFNJ 5GAEN 1Q81J 1K9MJ 4U67J 4WFAJ 5AN9F 3PIOJ 3G71H 3CC7H 4IO9J 1YI2H 2QEXH 2OTJH 1VQOH 5DM6J 1VQ9H 3CXCH 3CCVH 3CC4H 4WFBJ 1N8RJ 1WKIA 1K73J 3CPWH 3CCJH 1VQ5H 1YIJH 4UY8M 1VQ8H 1VQNH 5GAGN 3G6EH 1Y69K 1VQMH 3CCRH 2ZJPJ 1VQ6H 2PA2A 2QA4H 1YJWH 3CF5J 1VQ7H 3CMEH 5GAHN 1W2BH 1M1KJ 2OTLH 1KQSH 1VQKH 4IOCJ
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QVF H;  3CCQ H;  5DM7 J;  1Q7Y J;  5H1S O;  1VQL H;  1YJ9 H;  1Q82 J;  1QVG H;  3J7Z M;  1YHQ H;  4IOA J;  4WCE J;  1VQP H;  3CCE H;  1Q86 J;  3CMA H;  1YJN H;  3CCU H;  1S72 H;  2ZJR J;  3I56 H;  1KD1 J;  1NJI J;  1M90 J;  5MLC O;  1YIT H;  3DLL J;  4WF9 J;  3CC2 H;  3PIP J;  1VQ4 H;  3CD6 H;  5GAD N;  3I55 H;  3CCL H;  1K8A J;  5HL7 J;  3CCS H;  3OW2 H;  3G4S H;  3CCM H;  1KC8 J;  5JVG J;  1JJ2 H;  5JVH J;  2ZJQ J;  4WFN J;  5GAE N;  1Q81 J;  1K9M J;  4U67 J;  4WFA J;  5AN9 F;  3PIO J;  3G71 H;  3CC7 H;  4IO9 J;  1YI2 H;  2QEX H;  2OTJ H;  1VQO H;  5DM6 J;  1VQ9 H;  3CXC H;  3CCV H;  3CC4 H;  4WFB J;  1N8R J;  1WKI A;  1K73 J;  3CPW H;  3CCJ H;  1VQ5 H;  1YIJ H;  4UY8 M;  1VQ8 H;  1VQN H;  5GAG N;  3G6E H;  1Y69 K;  1VQM H;  3CCR H;  2ZJP J;  1VQ6 H;  2PA2 A;  2QA4 H;  1YJW H;  3CF5 J;  1VQ7 H;  3CME H;  5GAH N;  1W2B H;  1M1K J;  2OTL H;  1KQS H;  1VQK H;  4IOC J; 
#chains in the Genus database with same CATH topology
 1QVF H;  3WO0 A;  4IOC J;  3CCQ H;  1YTD A;  5DM7 J;  1Q7Y J;  5H1S O;  2W3R B;  1AZY A;  1VQL H;  1FFU B;  1YJ9 H;  3NVV C;  1NVI E;  3FAH A;  1Q82 J;  1QVG H;  3J7Z M;  4USA A;  4ZOH A;  1YHQ H;  3B9J C;  4IOA J;  3NVW C;  3L4P A;  2I14 A;  3TQV A;  4KWW A;  4WCE J;  1VQP H;  1OTP A;  4AP8 A;  2QIE A;  3WO1 A;  3CCE H;  3ETR C;  1Q86 J;  1QPO A;  2W55 B;  3CMA H;  1YJN H;  5HUL A;  3AM9 A;  4C80 A;  3CCU H;  1S72 H;  2J0F A;  1VLB A;  3L0G A;  2ZJR J;  2WK5 A;  1ZXI B;  4I9A A;  3RPF A;  1YTK A;  3I56 H;  1KD1 J;  2B7N A;  1NJI J;  5HUO A;  1QPR A;  3C2V A;  1FFV B;  3C2O A;  4YYY A;  3FC4 A;  1M90 J;  5MLC O;  1RM6 A;  1SIJ A;  4EAF A;  1YIT H;  2W3S B;  3DLL J;  4WF9 J;  2B7Q A;  2Q5W E;  1QAP A;  3CC2 H;  4LHM A;  1VQK H;  1YTE A;  3PIP J;  1VQ4 H;  1N61 B;  3CD6 H;  3WNZ A;  2DSJ A;  1N5W B;  5GAD N;  4KWV A;  4GA5 A;  2OMD A;  1NVJ A;  4GA4 A;  3I55 H;  1DGJ A;  3CCL H;  1K8A J;  2I1O A;  1FMA E;  5HL7 J;  3CCS H;  3OW2 H;  2W54 B;  1VDV A;  3G4S H;  2TPT A;  3CCM H;  5JVG J;  1KC8 J;  4US9 A;  1JJ2 H;  5JVH J;  3C2E A;  4YEK A;  2ZJQ J;  3NVZ C;  4WFN J;  5GAE N;  1V97 A;  1Q81 J;  1K9M J;  2B7P A;  4U67 J;  3GNN A;  4WFA J;  5AN9 F;  1BRW A;  2WK6 A;  3AMZ A;  3NS1 C;  3PIO J;  3G71 H;  1WYG A;  3CC7 H;  1FM0 E;  4IO9 J;  1N60 B;  1YI2 H;  5HUP A;  2QEX H;  1X1O A;  4GA6 A;  1VQO H;  2OTJ H;  1QPQ A;  5DM6 J;  1VQ9 H;  1O4U A;  3CXC H;  3CCV H;  5AYZ A;  3CC4 H;  2E3T A;  4C7Z A;  3NVY C;  3EUB 4;  1N8R J;  1WKI A;  1N63 B;  3C2R A;  5AYX A;  5EY3 A;  1K73 J;  3CCJ H;  1JRO B;  3CPW H;  3NRZ C;  5MPO C;  5EP8 A;  1QPN A;  5AYY A;  1VQ5 H;  1YIJ H;  4UY8 M;  1VQ8 H;  1VQN H;  1N62 B;  5GAG N;  3G6E H;  3VMM A;  1Y69 K;  1VQM H;  3CCR H;  3C2F A;  2WP4 A;  4XR5 A;  2ZJP J;  4X46 A;  4US8 A;  1VQ6 H;  2PA2 A;  1SB3 A;  2QA4 H;  3BII E;  1YJW H;  3CF5 J;  4C7Y A;  1FIQ C;  4EAD A;  1VQ7 H;  3AN1 A;  3PAJ A;  3H5Q A;  1FO4 A;  3CME H;  2JBM A;  5GAH N;  1JRP B;  1W2B H;  1UOU A;  1M1K J;  2OTL H;  1KQS H;  1N5X A;  4WFB J;  3SR6 C; 
#chains in the Genus database with same CATH homology
 1QVF H;  3CCQ H;  5DM7 J;  1Q7Y J;  5H1S O;  1VQL H;  1YJ9 H;  1Q82 J;  1QVG H;  3J7Z M;  1YHQ H;  4IOA J;  4WCE J;  1VQP H;  3CCE H;  1Q86 J;  3CMA H;  1YJN H;  3CCU H;  1S72 H;  2ZJR J;  3I56 H;  1KD1 J;  1NJI J;  1M90 J;  5MLC O;  1YIT H;  3DLL J;  4WF9 J;  3CC2 H;  3PIP J;  1VQ4 H;  3CD6 H;  5GAD N;  3I55 H;  3CCL H;  1K8A J;  5HL7 J;  3CCS H;  3OW2 H;  3G4S H;  3CCM H;  1KC8 J;  5JVG J;  1JJ2 H;  5JVH J;  2ZJQ J;  4WFN J;  5GAE N;  1Q81 J;  1K9M J;  4U67 J;  4WFA J;  5AN9 F;  3PIO J;  3G71 H;  3CC7 H;  4IO9 J;  1YI2 H;  2QEX H;  2OTJ H;  1VQO H;  5DM6 J;  1VQ9 H;  3CXC H;  3CCV H;  3CC4 H;  4WFB J;  1N8R J;  1WKI A;  1K73 J;  3CPW H;  3CCJ H;  1VQ5 H;  1YIJ H;  4UY8 M;  1VQ8 H;  1VQN H;  5GAG N;  3G6E H;  1Y69 K;  1VQM H;  3CCR H;  2ZJP J;  1VQ6 H;  2PA2 A;  2QA4 H;  1YJW H;  3CF5 J;  1VQ7 H;  3CME H;  5GAH N;  1W2B H;  1M1K J;  2OTL H;  1KQS H;  1VQK H;  4IOC J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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