3P2NA

Discovery and structural characterization of a new glycoside hydrolase family abundant in coastal waters that was annotated as 'hypothetical protein'
Total Genus 94
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
94
sequence length
362
structure length
362
Chain Sequence
TFTPEQIDHLGITDTNHLSAASKRALKWPTDLGNEWFIQFGPLQPLKGDLAYEEGVVRRDPSAIIKENGKYYVWYSKSTGPTQGFGGDIEKDKVFPWDRCDIWYATSEDGWTWKEEGPAVTRGEKGAYDDRSVFTVEIMKWEDKYYLCYQTVKSPYNVRVKNQVGLAWADSPDGPWTKSEEPILSPADNGVWKGEEQDRFAVIKKGDFDSHKVHDPCIIPYKGKFYLYYKGEQMGEAITFGGRQIRHGVAIADNPKGPYVKSPYNPISNSGHEICVWPYNGGIASLITTDGPEKNTIQWAPDGINFEIKSVIPGVNAHAIGLNRTADVEKEPTEILRWGLTHIYNNGDYQSIMRFSSERKTR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords 3,6-anhydro-alpha-L-galactosidase
publication title Discovery and structural characterization of a novel glycosidase family of marine origin.
pubmed doi rcsb
source organism Zobellia galactanivorans
total genus 94
structure length 362
sequence length 362
chains with identical sequence B
ec nomenclature ec 3.2.1.159: Alpha-neoagaro-oligosaccharide hydrolase.
pdb deposition date 2010-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04616 Glyco_hydro_43 Glycosyl hydrolases family 43
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 3p2nA00
1YIFA 4UDGA 2EXKA 2EXJA 1UYPA 3C2UA 4COTA 3ZXJA 3WMZA 5GLNA 2X8FA 5FMDA 3AKIA 5FMCA 5GLQA 4N2ZA 5FK8A 4O8PA 3D5YA 3KF5A 3VSZA 5AYDA 3WN2A 3AKFA 3QC2A 5A8DA 4N2RA 1UV4A 4FFFA 4KC8A 4AK5A 3R4YA 5FMBA 5GLOA 3BYNA 2YFSA 5C0PA 1YI7A 3LEMA 3OM7A 3OM2A 5B6TA 3PIGA 1PT2A 3VSFA 3AKGA 3ZXKA 2VDTA 4KMIA 1GYHA 5ANNA 5FIXA 5B6SA 3AKHA 2AEZA 4FFGA 3LIHA 5GLPA 3VSSA 1OYGA 5A8CA 3PIJA 1GYEB 3WMYA 2X8SA 2QQVA 5AY9A 3WN0A 4FFHA 3C7HA 3OM5A 3R67A 3OM6A 4KCBA 3WPYA 2B4WA 3LV4A 4UDKA 5GLMA 1YRZA 3WASA 4EQVA 4MLGA 4PVIA 2QQUA 4KCAA 3QEEA 3OM4A 3BYJA 3C7OA 3UGGA 1Y9MA 3WPZA 4NOVA 4AK6A 1W18A 3P2NA 3WAUA 3C7FA 3D61A 5JOWA 3LDKA 3NQHA 3C7EA 3VT1A 4KC7A 2AC1A 1VKDA 3C7GA 1Y7BA 3LFIA 3LDRA 4AK7A 1GYDB 4U6DA 5A7VB 3K1UA 5AYEA 4O8OA 1Y4WA 2AEYA 2EXHA 5FKCA 3WN1A 3LF7A 5AYCA 2OXBA 1WL7A 5JOXA 3KSTA 4N4BA 3WPUA 2EXIA 3QEDA 5GLRA 4O8NA 3WATA 3KF3A 3CU9A 3R4ZA 3LIGA 2X8TA 5FKBA 3VT0A 3U14A 5FK7A 2ADEA 4PVAA 4UDIA 4U6BA 3TAWA 2QQWA 5GLKA 3VT2A 5JOYA 3VSRA 3QEFA 3UGHA 5JOZA 3D5ZA 4N1IA 3SC7X 3D60A 3BYKA 2YFRA 5FLWA 3BYLA 3ZXLA 4D47A 2XQRA 5A7VA 4ONZA 3UGFA 3QZ4A 1W2TA 4UDKE 3WPVA 5GLLA 3RWKX 4QQSA 4FFIA 4UDJA 1ST8A 3U75A 2YFTA 1Y9GA 2ADDA
chains in the Genus database with same CATH superfamily
1YIFA 4UDGA 2EXKA 2EXJA 1UYPA 3C2UA 4COTA 3ZXJA 3WMZA 5GLNA 2X8FA 5FMDA 3AKIA 5FMCA 5GLQA 4N2ZA 5FK8A 4O8PA 3D5YA 3KF5A 3VSZA 5AYDA 3WN2A 5C2MA 3AKFA 3QC2A 5A8DA 4N2RA 1UV4A 4FFFA 4KC8A 4AK5A 3R4YA 5FMBA 5GLOA 3BYNA 2YFSA 5C0PA 1YI7A 3LEMA 3OM7A 3OM2A 1TL2A 5B6TA 3PIGA 1PT2A 3VSFA 3AKGA 3ZXKA 2VDTA 4KMIA 1GYHA 5ANNA 5FIXA 5B6SA 3AKHA 2AEZA 4FFGA 3LIHA 5GLPA 3VSSA 1OYGA 5A8CA 3PIJA 1GYEB 3WMYA 2X8SA 2QQVA 5AY9A 3WN0A 4FFHA 3C7HA 3OM5A 3R67A 3OM6A 4KCBA 3WPYA 2B4WA 3LV4A 4UDKA 5GLMA 1YRZA 3WASA 4EQVA 4MLGA 4PVIA 2QQUA 4KCAA 3QEEA 3OM4A 3BYJA 3C7OA 3UGGA 1Y9MA 3WPZA 4NOVA 4AK6A 1W18A 3P2NA 3WAUA 3C7FA 3D61A 5JOWA 3LDKA 3NQHA 3C7EA 3VT1A 4KC7A 2AC1A 1VKDA 3C7GA 1Y7BA 3LFIA 3LDRA 4AK7A 1GYDB 4U6DA 5A7VB 3K1UA 5AYEA 4O8OA 1Y4WA 2AEYA 2EXHA 5FKCA 3WN1A 3LF7A 5AYCA 2OXBA 1WL7A 5JOXA 3KSTA 4N4BA 3WPUA 2EXIA 3QEDA 5GLRA 4O8NA 3WATA 3KF3A 3CU9A 3R4ZA 3LIGA 2X8TA 5FKBA 3VT0A 3U14A 5FK7A 2ADEA 4PVAA 4UDIA 4U6BA 3TAWA 2QQWA 5GLKA 3VT2A 5JOYA 3VSRA 3QEFA 3UGHA 5JOZA 3D5ZA 4N1IA 3SC7X 3D60A 3BYKA 2YFRA 5FLWA 3BYLA 3ZXLA 4D47A 2XQRA 5A7VA 4ONZA 3UGFA 3QZ4A 1W2TA 4UDKE 3WPVA 5GLLA 3RWKX 4QQSA 4FFIA 4UDJA 1ST8A 3U75A 2YFTA 1Y9GA 2ADDA
chains in the Genus database with same CATH topology
1YIFA 4UDGA 2EXKA 2EXJA 1UYPA 3C2UA 4COTA 3ZXJA 3WMZA 5GLNA 2X8FA 5FMDA 3AKIA 5FMCA 5GLQA 4N2ZA 5FK8A 4O8PA 3D5YA 3KF5A 3VSZA 5AYDA 3WN2A 3AKFA 3QC2A 5A8DA 4N2RA 1UV4A 4FFFA 4KC8A 4AK5A 3R4YA 5FMBA 5GLOA 3BYNA 2YFSA 5C0PA 1YI7A 3LEMA 3OM7A 3OM2A 5B6TA 3PIGA 1PT2A 3VSFA 3AKGA 3ZXKA 2VDTA 4KMIA 1GYHA 5ANNA 5FIXA 5B6SA 3AKHA 2AEZA 4FFGA 3LIHA 5GLPA 3VSSA 1OYGA 5A8CA 3PIJA 1GYEB 3WMYA 2X8SA 2QQVA 5AY9A 3WN0A 4FFHA 3C7HA 3OM5A 3R67A 3OM6A 4KCBA 3WPYA 2B4WA 3LV4A 4UDKA 5GLMA 1YRZA 3WASA 4EQVA 4MLGA 4PVIA 2QQUA 4KCAA 3QEEA 3OM4A 3BYJA 3C7OA 3UGGA 1Y9MA 3WPZA 4NOVA 4AK6A 1W18A 3P2NA 3WAUA 3C7FA 3D61A 5JOWA 3LDKA 3NQHA 3C7EA 3VT1A 4KC7A 2AC1A 1VKDA 3C7GA 1Y7BA 3LFIA 3LDRA 4AK7A 1GYDB 4U6DA 5A7VB 3K1UA 5AYEA 4O8OA 1Y4WA 2AEYA 2EXHA 5FKCA 3WN1A 3LF7A 5AYCA 2OXBA 1WL7A 5JOXA 3KSTA 4N4BA 3WPUA 2EXIA 3QEDA 5GLRA 4O8NA 3WATA 3KF3A 3CU9A 3R4ZA 3LIGA 2X8TA 5FKBA 3VT0A 3U14A 5FK7A 2ADEA 4PVAA 4UDIA 4U6BA 3TAWA 2QQWA 5GLKA 3VT2A 5JOYA 3VSRA 3QEFA 3UGHA 5JOZA 3D5ZA 4N1IA 3SC7X 3D60A 3BYKA 2YFRA 5FLWA 3BYLA 3ZXLA 4D47A 2XQRA 5A7VA 4ONZA 3UGFA 3QZ4A 1W2TA 4UDKE 3WPVA 5GLLA 3RWKX 4QQSA 4FFIA 4UDJA 1ST8A 3U75A 2YFTA 1Y9GA 2ADDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YIF A;  4UDG A;  2EXK A;  2EXJ A;  1UYP A;  3C2U A;  4COT A;  3ZXJ A;  3WMZ A;  5GLN A;  2X8F A;  5FMD A;  3AKI A;  5FMC A;  5GLQ A;  4N2Z A;  5FK8 A;  4O8P A;  3D5Y A;  3KF5 A;  3VSZ A;  5AYD A;  3WN2 A;  3AKF A;  3QC2 A;  5A8D A;  4N2R A;  1UV4 A;  4FFF A;  4KC8 A;  4AK5 A;  3R4Y A;  5FMB A;  5GLO A;  3BYN A;  2YFS A;  5C0P A;  1YI7 A;  3LEM A;  3OM7 A;  3OM2 A;  5B6T A;  3PIG A;  1PT2 A;  3VSF A;  3AKG A;  3ZXK A;  2VDT A;  4KMI A;  1GYH A;  5ANN A;  5FIX A;  5B6S A;  3AKH A;  2AEZ A;  4FFG A;  3LIH A;  5GLP A;  3VSS A;  1OYG A;  5A8C A;  3PIJ A;  1GYE B;  3WMY A;  2X8S A;  2QQV A;  5AY9 A;  3WN0 A;  4FFH A;  3C7H A;  3OM5 A;  3R67 A;  3OM6 A;  4KCB A;  3WPY A;  2B4W A;  3LV4 A;  4UDK A;  5GLM A;  1YRZ A;  3WAS A;  4EQV A;  4MLG A;  4PVI A;  2QQU A;  4KCA A;  3QEE A;  3OM4 A;  3BYJ A;  3C7O A;  3UGG A;  1Y9M A;  3WPZ A;  4NOV A;  4AK6 A;  1W18 A;  3P2N A;  3WAU A;  3C7F A;  3D61 A;  5JOW A;  3LDK A;  3NQH A;  3C7E A;  3VT1 A;  4KC7 A;  2AC1 A;  1VKD A;  3C7G A;  1Y7B A;  3LFI A;  3LDR A;  4AK7 A;  1GYD B;  4U6D A;  5A7V B;  3K1U A;  5AYE A;  4O8O A;  1Y4W A;  2AEY A;  2EXH A;  5FKC A;  3WN1 A;  3LF7 A;  5AYC A;  2OXB A;  1WL7 A;  5JOX A;  3KST A;  4N4B A;  3WPU A;  2EXI A;  3QED A;  5GLR A;  4O8N A;  3WAT A;  3KF3 A;  3CU9 A;  3R4Z A;  3LIG A;  2X8T A;  5FKB A;  3VT0 A;  3U14 A;  5FK7 A;  2ADE A;  4PVA A;  4UDI A;  4U6B A;  3TAW A;  2QQW A;  5GLK A;  3VT2 A;  5JOY A;  3VSR A;  3QEF A;  3UGH A;  5JOZ A;  3D5Z A;  4N1I A;  3SC7 X;  3D60 A;  3BYK A;  2YFR A;  5FLW A;  3BYL A;  3ZXL A;  4D47 A;  2XQR A;  5A7V A;  4ONZ A;  3UGF A;  3QZ4 A;  1W2T A;  4UDK E;  3WPV A;  5GLL A;  3RWK X;  4QQS A;  4FFI A;  4UDJ A;  1ST8 A;  3U75 A;  2YFT A;  1Y9G A;  2ADD A; 
#chains in the Genus database with same CATH topology
 1YIF A;  4UDG A;  2EXK A;  2EXJ A;  1UYP A;  3C2U A;  4COT A;  3ZXJ A;  3WMZ A;  5GLN A;  2X8F A;  5FMD A;  3AKI A;  5FMC A;  5GLQ A;  4N2Z A;  5FK8 A;  4O8P A;  3D5Y A;  3KF5 A;  3VSZ A;  5AYD A;  3WN2 A;  5C2M A;  3AKF A;  3QC2 A;  5A8D A;  4N2R A;  1UV4 A;  4FFF A;  4KC8 A;  4AK5 A;  3R4Y A;  5FMB A;  5GLO A;  3BYN A;  2YFS A;  5C0P A;  1YI7 A;  3LEM A;  3OM7 A;  3OM2 A;  1TL2 A;  5B6T A;  3PIG A;  1PT2 A;  3VSF A;  3AKG A;  3ZXK A;  2VDT A;  4KMI A;  1GYH A;  5ANN A;  5FIX A;  5B6S A;  3AKH A;  2AEZ A;  4FFG A;  3LIH A;  5GLP A;  3VSS A;  1OYG A;  5A8C A;  3PIJ A;  1GYE B;  3WMY A;  2X8S A;  2QQV A;  5AY9 A;  3WN0 A;  4FFH A;  3C7H A;  3OM5 A;  3R67 A;  3OM6 A;  4KCB A;  3WPY A;  2B4W A;  3LV4 A;  4UDK A;  5GLM A;  1YRZ A;  3WAS A;  4EQV A;  4MLG A;  4PVI A;  2QQU A;  4KCA A;  3QEE A;  3OM4 A;  3BYJ A;  3C7O A;  3UGG A;  1Y9M A;  3WPZ A;  4NOV A;  4AK6 A;  1W18 A;  3P2N A;  3WAU A;  3C7F A;  3D61 A;  5JOW A;  3LDK A;  3NQH A;  3C7E A;  3VT1 A;  4KC7 A;  2AC1 A;  1VKD A;  3C7G A;  1Y7B A;  3LFI A;  3LDR A;  4AK7 A;  1GYD B;  4U6D A;  5A7V B;  3K1U A;  5AYE A;  4O8O A;  1Y4W A;  2AEY A;  2EXH A;  5FKC A;  3WN1 A;  3LF7 A;  5AYC A;  2OXB A;  1WL7 A;  5JOX A;  3KST A;  4N4B A;  3WPU A;  2EXI A;  3QED A;  5GLR A;  4O8N A;  3WAT A;  3KF3 A;  3CU9 A;  3R4Z A;  3LIG A;  2X8T A;  5FKB A;  3VT0 A;  3U14 A;  5FK7 A;  2ADE A;  4PVA A;  4UDI A;  4U6B A;  3TAW A;  2QQW A;  5GLK A;  3VT2 A;  5JOY A;  3VSR A;  3QEF A;  3UGH A;  5JOZ A;  3D5Z A;  4N1I A;  3SC7 X;  3D60 A;  3BYK A;  2YFR A;  5FLW A;  3BYL A;  3ZXL A;  4D47 A;  2XQR A;  5A7V A;  4ONZ A;  3UGF A;  3QZ4 A;  1W2T A;  4UDK E;  3WPV A;  5GLL A;  3RWK X;  4QQS A;  4FFI A;  4UDJ A;  1ST8 A;  3U75 A;  2YFT A;  1Y9G A;  2ADD A; 
#chains in the Genus database with same CATH homology
 1YIF A;  4UDG A;  2EXK A;  2EXJ A;  1UYP A;  3C2U A;  4COT A;  3ZXJ A;  3WMZ A;  5GLN A;  2X8F A;  5FMD A;  3AKI A;  5FMC A;  5GLQ A;  4N2Z A;  5FK8 A;  4O8P A;  3D5Y A;  3KF5 A;  3VSZ A;  5AYD A;  3WN2 A;  3AKF A;  3QC2 A;  5A8D A;  4N2R A;  1UV4 A;  4FFF A;  4KC8 A;  4AK5 A;  3R4Y A;  5FMB A;  5GLO A;  3BYN A;  2YFS A;  5C0P A;  1YI7 A;  3LEM A;  3OM7 A;  3OM2 A;  5B6T A;  3PIG A;  1PT2 A;  3VSF A;  3AKG A;  3ZXK A;  2VDT A;  4KMI A;  1GYH A;  5ANN A;  5FIX A;  5B6S A;  3AKH A;  2AEZ A;  4FFG A;  3LIH A;  5GLP A;  3VSS A;  1OYG A;  5A8C A;  3PIJ A;  1GYE B;  3WMY A;  2X8S A;  2QQV A;  5AY9 A;  3WN0 A;  4FFH A;  3C7H A;  3OM5 A;  3R67 A;  3OM6 A;  4KCB A;  3WPY A;  2B4W A;  3LV4 A;  4UDK A;  5GLM A;  1YRZ A;  3WAS A;  4EQV A;  4MLG A;  4PVI A;  2QQU A;  4KCA A;  3QEE A;  3OM4 A;  3BYJ A;  3C7O A;  3UGG A;  1Y9M A;  3WPZ A;  4NOV A;  4AK6 A;  1W18 A;  3P2N A;  3WAU A;  3C7F A;  3D61 A;  5JOW A;  3LDK A;  3NQH A;  3C7E A;  3VT1 A;  4KC7 A;  2AC1 A;  1VKD A;  3C7G A;  1Y7B A;  3LFI A;  3LDR A;  4AK7 A;  1GYD B;  4U6D A;  5A7V B;  3K1U A;  5AYE A;  4O8O A;  1Y4W A;  2AEY A;  2EXH A;  5FKC A;  3WN1 A;  3LF7 A;  5AYC A;  2OXB A;  1WL7 A;  5JOX A;  3KST A;  4N4B A;  3WPU A;  2EXI A;  3QED A;  5GLR A;  4O8N A;  3WAT A;  3KF3 A;  3CU9 A;  3R4Z A;  3LIG A;  2X8T A;  5FKB A;  3VT0 A;  3U14 A;  5FK7 A;  2ADE A;  4PVA A;  4UDI A;  4U6B A;  3TAW A;  2QQW A;  5GLK A;  3VT2 A;  5JOY A;  3VSR A;  3QEF A;  3UGH A;  5JOZ A;  3D5Z A;  4N1I A;  3SC7 X;  3D60 A;  3BYK A;  2YFR A;  5FLW A;  3BYL A;  3ZXL A;  4D47 A;  2XQR A;  5A7V A;  4ONZ A;  3UGF A;  3QZ4 A;  1W2T A;  4UDK E;  3WPV A;  5GLL A;  3RWK X;  4QQS A;  4FFI A;  4UDJ A;  1ST8 A;  3U75 A;  2YFT A;  1Y9G A;  2ADD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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