3P4PD

Crystal structure of menaquinol:fumarate oxidoreductase in complex with fumarate
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
119
structure length
119
Chain Sequence
MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTLIGVVTI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Fumarate reductase flavoprotein subunit
publication title Geometric restraint drives on- and off-pathway catalysis by the Escherichia coli menaquinol:fumarate reductase.
pubmed doi rcsb
source organism Escherichia coli 042
total genus 43
structure length 119
sequence length 119
chains with identical sequence P
ec nomenclature
pdb deposition date 2010-10-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02313 Fumarate_red_D Fumarate reductase subunit D
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 3p4pD00
3AE3C 1L0VD 3AEBC 1ZOYD 3SFED 1YQ4C 2BS4C 3P4PC 2B76C 4YTMD 3AE4C 1YQ3D 2ACZD 2WU5D 2WDRC 3VRBC 2WDVC 3VRAC 4YTND 3AE6D 4YSYD 3AE9D 2H88C 1ZP0C 4YSXD 5C3JD 1NEND 1KF6D 3AE2C 3CIRD 3AE3D 3AEBD 3AEFD 1QLBC 3P4PD 2WP9C 2B76D 3AE4D 5C2TC 3AEAD 3AEED 2WDRD 3VRBD 2WDQC 4YT0C 3VRAD 4YXDC 3AE8C 3AE7C 3AEGC 3SFDC 1ZP0D 3AE2D 4YTPC 3VR9C 3P4QC 3AECC 2BS3C 3AEDC 2WP9D 4YT0D 3P4RC 3AE7D 4KX6C 1YQ4D 2H89C 3ABVC 4YTPD 3VR9D 3P4QD 3VR8C 3AE1C 4YSZC 2WQYC 2WDVD 1KFYC 2H88D 3P4RD 1YQ3C 2WU5C 3AE5C 3P4SC 2WU2C 4YTNC 5C2TD 3VR8D 3AE1D 2WDQD 2WQYD 4YSZD 4YXDD 3AE9C 2FBWC 3AE8D 1KFYD 3AEGD 4YSXC 1NENC 2WS3C 1NEKC 3CIRC 3SFDD 3AEFC 3AECD 3AE5D 3AEAC 3P4SD 3AEDD 3AEEC 2WU2D 1E7PC 1L0VC 1ZOYC 2FBWD 3SFEC 4YTMC 4KX6D 2ACZC 2WS3D 1NEKD 2H89D 3ABVD 2BS2C 3AE6C 4YSYC 5C3JC 1KF6C
chains in the Genus database with same CATH superfamily
3AE3C 1L0VD 3AEBC 1ZOYD 4DHZA 3SFED 1YQ4C 2BS4C 3P4PC 2B76C 4YTMD 3AE4C 1YQ3D 2ACZD 2WU5D 2WDRC 3VRBC 2WDVC 3VRAC 4YTND 3AE6D 4YSYD 3AE9D 2H88C 3VONA 1ZP0C 4YSXD 5C3JD 1NEND 1KF6D 3AE2C 3CIRD 3AE3D 3AEBD 3AEFD 1QLBC 3P4PD 2WP9C 1TFFA 2B76D 3AE4D 4FJVA 5C2TC 3AEAD 3AEED 2WDRD 3VRBD 2WDQC 4YT0C 3VRAD 4YXDC 3AE8C 3AE7C 3AEGC 3SFDC 1ZP0D 4DDGA 3AE2D 4YTPC 3VR9C 3P4QC 3AECC 2BS3C 3AEDC 2WP9D 4YT0D 3P4RC 3AE7D 4KX6C 1YQ4D 2H89C 3ABVC 4YTPD 3VR9D 3P4QD 3VR8C 3AE1C 4YSZC 2WQYC 2WDVD 1KFYC 2H88D 4I6LA 3P4RD 1YQ3C 2WU5C 3AE5C 3P4SC 2WU2C 4YTNC 5C2TD 3VR8D 3AE1D 2WDQD 2WQYD 4YSZD 4YXDD 3AE9C 2FBWC 3AE8D 1KFYD 3AEGD 4YSXC 1NENC 2WS3C 1NEKC 3CIRC 3SFDD 3AEFC 3AECD 3AE5D 3AEAC 3P4SD 3AEDD 4DHJA 3AEEC 2ZFYA 2WU2D 1E7PC 1L0VC 4DHIB 1ZOYC 2FBWD 3SFEC 4YTMC 4KX6D 2ACZC 2WS3D 1NEKD 2H89D 3ABVD 2BS2C 3AE6C 4YSYC 5C3JC 4DDIA 1KF6C 4LDTA
chains in the Genus database with same CATH topology
3AE3C 1L0VD 3AEBC 1ZOYD 3SFED 1YQ4C 2BS4C 3P4PC 2B76C 4YTMD 3AE4C 1YQ3D 2ACZD 2WU5D 2WDRC 3VRBC 2WDVC 3VRAC 4YTND 3AE6D 4YSYD 3AE9D 2H88C 1ZP0C 4YSXD 5C3JD 1NEND 1KF6D 3AE2C 3CIRD 3AE3D 3AEBD 3AEFD 1QLBC 3P4PD 2WP9C 2B76D 3AE4D 5C2TC 3AEAD 3AEED 2WDRD 3VRBD 2WDQC 4YT0C 3VRAD 4YXDC 3AE8C 3AE7C 3AEGC 3SFDC 1ZP0D 3AE2D 4YTPC 3VR9C 3P4QC 3AECC 2BS3C 3AEDC 2WP9D 4YT0D 3P4RC 3AE7D 4KX6C 1YQ4D 2H89C 3ABVC 4YTPD 3VR9D 3P4QD 3VR8C 3AE1C 4YSZC 2WQYC 2WDVD 1KFYC 2H88D 3P4RD 1YQ3C 2WU5C 3AE5C 3P4SC 2WU2C 4YTNC 5C2TD 3VR8D 3AE1D 2WDQD 2WQYD 4YSZD 4YXDD 3AE9C 2FBWC 3AE8D 1KFYD 3AEGD 4YSXC 1NENC 2WS3C 1NEKC 3CIRC 3SFDD 3AEFC 3AECD 3AE5D 3AEAC 3P4SD 3AEDD 3AEEC 2WU2D 1E7PC 1L0VC 1ZOYC 2FBWD 3SFEC 4YTMC 4KX6D 2ACZC 2WS3D 1NEKD 2H89D 3ABVD 2BS2C 3AE6C 4YSYC 5C3JC 1KF6C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AE3 C;  1L0V D;  3AEB C;  1ZOY D;  3SFE D;  1YQ4 C;  2BS4 C;  3P4P C;  2B76 C;  4YTM D;  3AE4 C;  1YQ3 D;  2ACZ D;  2WU5 D;  2WDR C;  3VRB C;  2WDV C;  3VRA C;  4YTN D;  3AE6 D;  4YSY D;  3AE9 D;  2H88 C;  1ZP0 C;  4YSX D;  5C3J D;  1NEN D;  1KF6 D;  3AE2 C;  3CIR D;  3AE3 D;  3AEB D;  3AEF D;  1QLB C;  3P4P D;  2WP9 C;  2B76 D;  3AE4 D;  5C2T C;  3AEA D;  3AEE D;  2WDR D;  3VRB D;  2WDQ C;  4YT0 C;  3VRA D;  4YXD C;  3AE8 C;  3AE7 C;  3AEG C;  3SFD C;  1ZP0 D;  3AE2 D;  4YTP C;  3VR9 C;  3P4Q C;  3AEC C;  2BS3 C;  3AED C;  2WP9 D;  4YT0 D;  3P4R C;  3AE7 D;  4KX6 C;  1YQ4 D;  2H89 C;  3ABV C;  4YTP D;  3VR9 D;  3P4Q D;  3VR8 C;  3AE1 C;  4YSZ C;  2WQY C;  2WDV D;  1KFY C;  2H88 D;  3P4R D;  1YQ3 C;  2WU5 C;  3AE5 C;  3P4S C;  2WU2 C;  4YTN C;  5C2T D;  3VR8 D;  3AE1 D;  2WDQ D;  2WQY D;  4YSZ D;  4YXD D;  3AE9 C;  2FBW C;  3AE8 D;  1KFY D;  3AEG D;  4YSX C;  1NEN C;  2WS3 C;  1NEK C;  3CIR C;  3SFD D;  3AEF C;  3AEC D;  3AE5 D;  3AEA C;  3P4S D;  3AED D;  3AEE C;  2WU2 D;  1E7P C;  1L0V C;  1ZOY C;  2FBW D;  3SFE C;  4YTM C;  4KX6 D;  2ACZ C;  2WS3 D;  1NEK D;  2H89 D;  3ABV D;  2BS2 C;  3AE6 C;  4YSY C;  5C3J C;  1KF6 C; 
#chains in the Genus database with same CATH topology
 3AE3 C;  1L0V D;  3AEB C;  1ZOY D;  4DHZ A;  3SFE D;  1YQ4 C;  2BS4 C;  3P4P C;  2B76 C;  4YTM D;  3AE4 C;  1YQ3 D;  2ACZ D;  2WU5 D;  2WDR C;  3VRB C;  2WDV C;  3VRA C;  4YTN D;  3AE6 D;  4YSY D;  3AE9 D;  2H88 C;  3VON A;  1ZP0 C;  4YSX D;  5C3J D;  1NEN D;  1KF6 D;  3AE2 C;  3CIR D;  3AE3 D;  3AEB D;  3AEF D;  1QLB C;  3P4P D;  2WP9 C;  1TFF A;  2B76 D;  3AE4 D;  4FJV A;  5C2T C;  3AEA D;  3AEE D;  2WDR D;  3VRB D;  2WDQ C;  4YT0 C;  3VRA D;  4YXD C;  3AE8 C;  3AE7 C;  3AEG C;  3SFD C;  1ZP0 D;  4DDG A;  3AE2 D;  4YTP C;  3VR9 C;  3P4Q C;  3AEC C;  2BS3 C;  3AED C;  2WP9 D;  4YT0 D;  3P4R C;  3AE7 D;  4KX6 C;  1YQ4 D;  2H89 C;  3ABV C;  4YTP D;  3VR9 D;  3P4Q D;  3VR8 C;  3AE1 C;  4YSZ C;  2WQY C;  2WDV D;  1KFY C;  2H88 D;  4I6L A;  3P4R D;  1YQ3 C;  2WU5 C;  3AE5 C;  3P4S C;  2WU2 C;  4YTN C;  5C2T D;  3VR8 D;  3AE1 D;  2WDQ D;  2WQY D;  4YSZ D;  4YXD D;  3AE9 C;  2FBW C;  3AE8 D;  1KFY D;  3AEG D;  4YSX C;  1NEN C;  2WS3 C;  1NEK C;  3CIR C;  3SFD D;  3AEF C;  3AEC D;  3AE5 D;  3AEA C;  3P4S D;  3AED D;  4DHJ A;  3AEE C;  2ZFY A;  2WU2 D;  1E7P C;  1L0V C;  4DHI B;  1ZOY C;  2FBW D;  3SFE C;  4YTM C;  4KX6 D;  2ACZ C;  2WS3 D;  1NEK D;  2H89 D;  3ABV D;  2BS2 C;  3AE6 C;  4YSY C;  5C3J C;  4DDI A;  1KF6 C;  4LDT A; 
#chains in the Genus database with same CATH homology
 3AE3 C;  1L0V D;  3AEB C;  1ZOY D;  3SFE D;  1YQ4 C;  2BS4 C;  3P4P C;  2B76 C;  4YTM D;  3AE4 C;  1YQ3 D;  2ACZ D;  2WU5 D;  2WDR C;  3VRB C;  2WDV C;  3VRA C;  4YTN D;  3AE6 D;  4YSY D;  3AE9 D;  2H88 C;  1ZP0 C;  4YSX D;  5C3J D;  1NEN D;  1KF6 D;  3AE2 C;  3CIR D;  3AE3 D;  3AEB D;  3AEF D;  1QLB C;  3P4P D;  2WP9 C;  2B76 D;  3AE4 D;  5C2T C;  3AEA D;  3AEE D;  2WDR D;  3VRB D;  2WDQ C;  4YT0 C;  3VRA D;  4YXD C;  3AE8 C;  3AE7 C;  3AEG C;  3SFD C;  1ZP0 D;  3AE2 D;  4YTP C;  3VR9 C;  3P4Q C;  3AEC C;  2BS3 C;  3AED C;  2WP9 D;  4YT0 D;  3P4R C;  3AE7 D;  4KX6 C;  1YQ4 D;  2H89 C;  3ABV C;  4YTP D;  3VR9 D;  3P4Q D;  3VR8 C;  3AE1 C;  4YSZ C;  2WQY C;  2WDV D;  1KFY C;  2H88 D;  3P4R D;  1YQ3 C;  2WU5 C;  3AE5 C;  3P4S C;  2WU2 C;  4YTN C;  5C2T D;  3VR8 D;  3AE1 D;  2WDQ D;  2WQY D;  4YSZ D;  4YXD D;  3AE9 C;  2FBW C;  3AE8 D;  1KFY D;  3AEG D;  4YSX C;  1NEN C;  2WS3 C;  1NEK C;  3CIR C;  3SFD D;  3AEF C;  3AEC D;  3AE5 D;  3AEA C;  3P4S D;  3AED D;  3AEE C;  2WU2 D;  1E7P C;  1L0V C;  1ZOY C;  2FBW D;  3SFE C;  4YTM C;  4KX6 D;  2ACZ C;  2WS3 D;  1NEK D;  2H89 D;  3ABV D;  2BS2 C;  3AE6 C;  4YSY C;  5C3J C;  1KF6 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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