3P4RC

Crystal structure of menaquinol:fumarate oxidoreductase in complex with glutarate
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
130
structure length
130
Chain Sequence
TTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATIVILFVALYW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
source organism Escherichia coli 042
publication title Geometric restraint drives on- and off-pathway catalysis by the Escherichia coli menaquinol:fumarate reductase.
pubmed doi rcsb
molecule keywords Fumarate reductase flavoprotein subunit
total genus 43
structure length 130
sequence length 130
chains with identical sequence O
ec nomenclature
pdb deposition date 2010-10-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF02300 Fumarate_red_C Fumarate reductase subunit C
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 3p4rC00
3AEGC 3AEEC 4YTMD 2BS2C 3AE4D 3P4RC 1NEKC 3AE8D 1NENC 1L0VC 2WU5C 4YTPC 2WDQC 4YXDC 4KX6C 4YTND 2WDVD 3VR8D 2ACZD 3AEFD 3AEBC 2WQYD 2WP9C 4YSZC 4YSXD 3AE5C 2B76D 2H89C 1YQ4C 3AE9C 4YT0C 1QLBC 3CIRC 2BS4C 3AE2D 3AE4C 1KFYD 3AE8C 3AE1D 2FBWD 3SFED 3AE3D 4YTNC 1YQ3D 2WDVC 3AEAD 2ACZC 3AEFC 2WQYC 3VRAD 3P4SD 3AEDD 4YSXC 4YT0D 2B76C 3VR9D 2H88D 3AE7D 4YTMC 1KFYC 1KF6D 3AE1C 2FBWC 3AECD 3P4PD 3P4QD 5C3JD 4KX6D 4YSYD 3AE6D 2WS3D 3SFEC 3VRBD 1YQ3C 3ABVD 3AEAC 2WP9D 4YSZD 3VR8C 3VRAC 1ZOYD 5C2TD 3P4SC 3AEDC 2WU2D 1YQ4D 3VR9C 1ZP0D 2H88C 3SFDD 1E7PC 2WDRD 3AEGD 3AEED 3AE7C 3P4RD 1NEKD 3AE2C 1NEND 1KF6C 3AECC 3P4PC 3P4QC 5C3JC 1L0VD 2WU5D 4YTPD 2WDQD 4YSYC 4YXDD 3AE6C 2WS3C 3VRBC 3AE3C 3ABVC 3AEBD 1ZOYC 2BS3C 5C2TC 2WU2C 3AE5D 2H89D 1ZP0C 3SFDC 2WDRC 3AE9D 3CIRD
chains in the Genus database with same CATH superfamily
3AEGC 3AEEC 4YTMD 2BS2C 3AE4D 3P4RC 1NEKC 3AE8D 1NENC 1L0VC 2WU5C 4YTPC 2WDQC 4YXDC 4KX6C 4YTND 2WDVD 3VR8D 2ACZD 3AEFD 3AEBC 2WQYD 2WP9C 4YSZC 4DHIB 4YSXD 4FJVA 3AE5C 2B76D 2H89C 4DDGA 1YQ4C 4DDIA 3AE9C 4YT0C 1QLBC 3CIRC 2BS4C 3VONA 3AE2D 3AE4C 1KFYD 3AE8C 3AE1D 2FBWD 3SFED 3AE3D 4YTNC 1YQ3D 2WDVC 3AEAD 2ACZC 3AEFC 4DHZA 2WQYC 3VRAD 3P4SD 3AEDD 4YSXC 4YT0D 2B76C 3VR9D 2H88D 3AE7D 4I6LA 4YTMC 1KFYC 1KF6D 3AE1C 2FBWC 3AECD 3P4PD 3P4QD 5C3JD 4KX6D 4YSYD 3AE6D 2WS3D 3SFEC 3VRBD 1YQ3C 3ABVD 3AEAC 2WP9D 4YSZD 3VR8C 3VRAC 1ZOYD 5C2TD 3P4SC 3AEDC 2WU2D 1YQ4D 3VR9C 1ZP0D 2H88C 3SFDD 1E7PC 2WDRD 3AEGD 3AEED 3AE7C 4LDTA 3P4RD 1NEKD 2ZFYA 3AE2C 1NEND 1KF6C 3AECC 3P4PC 3P4QC 5C3JC 1L0VD 2WU5D 4YTPD 2WDQD 4YSYC 4YXDD 3AE6C 2WS3C 3VRBC 3AE3C 3ABVC 3AEBD 4DHJA 1ZOYC 2BS3C 5C2TC 2WU2C 3AE5D 2H89D 1TFFA 1ZP0C 3SFDC 2WDRC 3AE9D 3CIRD
chains in the Genus database with same CATH topology
3AEGC 3AEEC 4YTMD 2BS2C 3AE4D 3P4RC 1NEKC 3AE8D 1NENC 1L0VC 2WU5C 4YTPC 2WDQC 4YXDC 4KX6C 4YTND 2WDVD 3VR8D 2ACZD 3AEFD 3AEBC 2WQYD 2WP9C 4YSZC 4YSXD 3AE5C 2B76D 2H89C 1YQ4C 3AE9C 4YT0C 1QLBC 3CIRC 2BS4C 3AE2D 3AE4C 1KFYD 3AE8C 3AE1D 2FBWD 3SFED 3AE3D 4YTNC 1YQ3D 2WDVC 3AEAD 2ACZC 3AEFC 2WQYC 3VRAD 3P4SD 3AEDD 4YSXC 4YT0D 2B76C 3VR9D 2H88D 3AE7D 4YTMC 1KFYC 1KF6D 3AE1C 2FBWC 3AECD 3P4PD 3P4QD 5C3JD 4KX6D 4YSYD 3AE6D 2WS3D 3SFEC 3VRBD 1YQ3C 3ABVD 3AEAC 2WP9D 4YSZD 3VR8C 3VRAC 1ZOYD 5C2TD 3P4SC 3AEDC 2WU2D 1YQ4D 3VR9C 1ZP0D 2H88C 3SFDD 1E7PC 2WDRD 3AEGD 3AEED 3AE7C 3P4RD 1NEKD 3AE2C 1NEND 1KF6C 3AECC 3P4PC 3P4QC 5C3JC 1L0VD 2WU5D 4YTPD 2WDQD 4YSYC 4YXDD 3AE6C 2WS3C 3VRBC 3AE3C 3ABVC 3AEBD 1ZOYC 2BS3C 5C2TC 2WU2C 3AE5D 2H89D 1ZP0C 3SFDC 2WDRC 3AE9D 3CIRD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AEG C;  3AEE C;  4YTM D;  2BS2 C;  3AE4 D;  3P4R C;  1NEK C;  3AE8 D;  1NEN C;  1L0V C;  2WU5 C;  4YTP C;  2WDQ C;  4YXD C;  4KX6 C;  4YTN D;  2WDV D;  3VR8 D;  2ACZ D;  3AEF D;  3AEB C;  2WQY D;  2WP9 C;  4YSZ C;  4YSX D;  3AE5 C;  2B76 D;  2H89 C;  1YQ4 C;  3AE9 C;  4YT0 C;  1QLB C;  3CIR C;  2BS4 C;  3AE2 D;  3AE4 C;  1KFY D;  3AE8 C;  3AE1 D;  2FBW D;  3SFE D;  3AE3 D;  4YTN C;  1YQ3 D;  2WDV C;  3AEA D;  2ACZ C;  3AEF C;  2WQY C;  3VRA D;  3P4S D;  3AED D;  4YSX C;  4YT0 D;  2B76 C;  3VR9 D;  2H88 D;  3AE7 D;  4YTM C;  1KFY C;  1KF6 D;  3AE1 C;  2FBW C;  3AEC D;  3P4P D;  3P4Q D;  5C3J D;  4KX6 D;  4YSY D;  3AE6 D;  2WS3 D;  3SFE C;  3VRB D;  1YQ3 C;  3ABV D;  3AEA C;  2WP9 D;  4YSZ D;  3VR8 C;  3VRA C;  1ZOY D;  5C2T D;  3P4S C;  3AED C;  2WU2 D;  1YQ4 D;  3VR9 C;  1ZP0 D;  2H88 C;  3SFD D;  1E7P C;  2WDR D;  3AEG D;  3AEE D;  3AE7 C;  3P4R D;  1NEK D;  3AE2 C;  1NEN D;  1KF6 C;  3AEC C;  3P4P C;  3P4Q C;  5C3J C;  1L0V D;  2WU5 D;  4YTP D;  2WDQ D;  4YSY C;  4YXD D;  3AE6 C;  2WS3 C;  3VRB C;  3AE3 C;  3ABV C;  3AEB D;  1ZOY C;  2BS3 C;  5C2T C;  2WU2 C;  3AE5 D;  2H89 D;  1ZP0 C;  3SFD C;  2WDR C;  3AE9 D;  3CIR D; 
#chains in the Genus database with same CATH topology
 3AEG C;  3AEE C;  4YTM D;  2BS2 C;  3AE4 D;  3P4R C;  1NEK C;  3AE8 D;  1NEN C;  1L0V C;  2WU5 C;  4YTP C;  2WDQ C;  4YXD C;  4KX6 C;  4YTN D;  2WDV D;  3VR8 D;  2ACZ D;  3AEF D;  3AEB C;  2WQY D;  2WP9 C;  4YSZ C;  4DHI B;  4YSX D;  4FJV A;  3AE5 C;  2B76 D;  2H89 C;  4DDG A;  1YQ4 C;  4DDI A;  3AE9 C;  4YT0 C;  1QLB C;  3CIR C;  2BS4 C;  3VON A;  3AE2 D;  3AE4 C;  1KFY D;  3AE8 C;  3AE1 D;  2FBW D;  3SFE D;  3AE3 D;  4YTN C;  1YQ3 D;  2WDV C;  3AEA D;  2ACZ C;  3AEF C;  4DHZ A;  2WQY C;  3VRA D;  3P4S D;  3AED D;  4YSX C;  4YT0 D;  2B76 C;  3VR9 D;  2H88 D;  3AE7 D;  4I6L A;  4YTM C;  1KFY C;  1KF6 D;  3AE1 C;  2FBW C;  3AEC D;  3P4P D;  3P4Q D;  5C3J D;  4KX6 D;  4YSY D;  3AE6 D;  2WS3 D;  3SFE C;  3VRB D;  1YQ3 C;  3ABV D;  3AEA C;  2WP9 D;  4YSZ D;  3VR8 C;  3VRA C;  1ZOY D;  5C2T D;  3P4S C;  3AED C;  2WU2 D;  1YQ4 D;  3VR9 C;  1ZP0 D;  2H88 C;  3SFD D;  1E7P C;  2WDR D;  3AEG D;  3AEE D;  3AE7 C;  4LDT A;  3P4R D;  1NEK D;  2ZFY A;  3AE2 C;  1NEN D;  1KF6 C;  3AEC C;  3P4P C;  3P4Q C;  5C3J C;  1L0V D;  2WU5 D;  4YTP D;  2WDQ D;  4YSY C;  4YXD D;  3AE6 C;  2WS3 C;  3VRB C;  3AE3 C;  3ABV C;  3AEB D;  4DHJ A;  1ZOY C;  2BS3 C;  5C2T C;  2WU2 C;  3AE5 D;  2H89 D;  1TFF A;  1ZP0 C;  3SFD C;  2WDR C;  3AE9 D;  3CIR D; 
#chains in the Genus database with same CATH homology
 3AEG C;  3AEE C;  4YTM D;  2BS2 C;  3AE4 D;  3P4R C;  1NEK C;  3AE8 D;  1NEN C;  1L0V C;  2WU5 C;  4YTP C;  2WDQ C;  4YXD C;  4KX6 C;  4YTN D;  2WDV D;  3VR8 D;  2ACZ D;  3AEF D;  3AEB C;  2WQY D;  2WP9 C;  4YSZ C;  4YSX D;  3AE5 C;  2B76 D;  2H89 C;  1YQ4 C;  3AE9 C;  4YT0 C;  1QLB C;  3CIR C;  2BS4 C;  3AE2 D;  3AE4 C;  1KFY D;  3AE8 C;  3AE1 D;  2FBW D;  3SFE D;  3AE3 D;  4YTN C;  1YQ3 D;  2WDV C;  3AEA D;  2ACZ C;  3AEF C;  2WQY C;  3VRA D;  3P4S D;  3AED D;  4YSX C;  4YT0 D;  2B76 C;  3VR9 D;  2H88 D;  3AE7 D;  4YTM C;  1KFY C;  1KF6 D;  3AE1 C;  2FBW C;  3AEC D;  3P4P D;  3P4Q D;  5C3J D;  4KX6 D;  4YSY D;  3AE6 D;  2WS3 D;  3SFE C;  3VRB D;  1YQ3 C;  3ABV D;  3AEA C;  2WP9 D;  4YSZ D;  3VR8 C;  3VRA C;  1ZOY D;  5C2T D;  3P4S C;  3AED C;  2WU2 D;  1YQ4 D;  3VR9 C;  1ZP0 D;  2H88 C;  3SFD D;  1E7P C;  2WDR D;  3AEG D;  3AEE D;  3AE7 C;  3P4R D;  1NEK D;  3AE2 C;  1NEN D;  1KF6 C;  3AEC C;  3P4P C;  3P4Q C;  5C3J C;  1L0V D;  2WU5 D;  4YTP D;  2WDQ D;  4YSY C;  4YXD D;  3AE6 C;  2WS3 C;  3VRB C;  3AE3 C;  3ABV C;  3AEB D;  1ZOY C;  2BS3 C;  5C2T C;  2WU2 C;  3AE5 D;  2H89 D;  1ZP0 C;  3SFD C;  2WDR C;  3AE9 D;  3CIR D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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