3P4RC

Crystal structure of menaquinol:fumarate oxidoreductase in complex with glutarate
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
130
structure length
130
Chain Sequence
b'TTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATIVILFVALYW'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Fumarate reductase flavoprotein subunit
publication title Geometric restraint drives on- and off-pathway catalysis by the Escherichia coli menaquinol:fumarate reductase.
pubmed doi rcsb
source organism Escherichia coli 042
molecule tags Oxidoreductase
total genus 43
structure length 130
sequence length 130
chains with identical sequence O
ec nomenclature
pdb deposition date 2010-10-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF02300 Fumarate_red_C Fumarate reductase subunit C
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 3p4rC00
1YQ3D 2WQYC 1KFYD 2WS3C 4YTND 1YQ4C 4YSYD 2BS2C 3AE2D 2WS3D 1YQ4D 2WDRC 3AEEC 3AE3C 1ZOYC 2WDRD 3AEED 4YTPD 1ZOYD 2BS4C 3AE7C 4YT0D 4KX6C 2WU2C 5C3JC 3VRAC 3AEGD 1YQ3C 3AEAD 2WU2D 1E7PC 3AE2C 3P4PD 3VRAD 4YTPC 1QLBC 1NEKC 4YTMC 2WDQC 4YT0C 1NEKD 3VR9D 1ZP0C 3P4SD 4YTMD 2BS3C 3VR8C 2WDQD 3P4RC 1ZP0D 3AEGC 3AEAC 3SFEC 2H89C 3AEBD 3VR8D 3P4RD 3AE9D 3P4PC 4YSXC 3SFED 2H89D 1KF6C 1NENC 4YSXD 1NEND 1KF6D 3P4QC 3CIRD 3P4QD 3AE4C 3AE1D 1L0VD 2B76D 3AE4D 3ABVD 3VR9C 3P4SC 2WP9C 3AE6C 2WP9D 3AEBC 3AE6D 3AE9C 4YSZC 3AE8C 3VRBC 4YSZD 2WQYD 3AE8D 3AEFC 3VRBD 3CIRC 3AE1C 3AEFD 3AE5C 2ACZC 3AE3D 1L0VC 2B76C 3AE5D 2ACZD 2WU5C 3ABVC 4YXDC 2WDVC 4YXDD 2WU5D 2FBWC 3SFDC 3AECC 2WDVD 3AEDC 2H88C 3AE7D 2FBWD 5C2TC 3SFDD 3AECD 3AEDD 4KX6D 2H88D 1KFYC 4YTNC 5C2TD 4YSYC 5C3JD
chains in the Genus database with same CATH superfamily
1YQ3D 2WQYC 1KFYD 2WS3C 4YTND 1YQ4C 4YSYD 2BS2C 3AE2D 2WS3D 1YQ4D 4DDIA 2WDRC 3AEEC 3AE3C 1ZOYC 2WDRD 3AEED 4YTPD 1ZOYD 2BS4C 3AE7C 4YT0D 4KX6C 2WU2C 5C3JC 3VRAC 3AEGD 1YQ3C 3AEAD 2WU2D 1E7PC 3AE2C 3P4PD 3VRAD 4YTPC 1QLBC 1TFFA 4DDGA 1NEKC 4YTMC 2WDQC 4YT0C 1NEKD 3VR9D 1ZP0C 3P4SD 4YTMD 2BS3C 3VR8C 2WDQD 3P4RC 1ZP0D 3AEGC 3AEAC 4DHJA 3SFEC 2H89C 3AEBD 3VR8D 3P4RD 3AE9D 3P4PC 4YSXC 3SFED 2H89D 1KF6C 1NENC 3VONA 4YSXD 1NEND 1KF6D 3P4QC 4LDTA 3CIRD 3P4QD 3AE4C 3AE1D 1L0VD 2B76D 3AE4D 3ABVD 3VR9C 3P4SC 2WP9C 4DHZA 3AE6C 2WP9D 3AEBC 3AE6D 3AE9C 4FJVA 4YSZC 3AE8C 3VRBC 4I6LA 4YSZD 2WQYD 3AE8D 3AEFC 3VRBD 3CIRC 3AE1C 3AEFD 3AE5C 2ACZC 3AE3D 1L0VC 2B76C 3AE5D 2ACZD 2WU5C 3ABVC 4DHIB 4YXDC 2WDVC 4YXDD 2WU5D 2FBWC 2ZFYA 3SFDC 3AECC 2WDVD 3AEDC 2H88C 3AE7D 2FBWD 5C2TC 3SFDD 3AECD 3AEDD 4KX6D 2H88D 1KFYC 4YTNC 5C2TD 4YSYC 5C3JD
chains in the Genus database with same CATH topology
1YQ3D 2WQYC 1KFYD 2WS3C 4YTND 1YQ4C 4YSYD 2BS2C 3AE2D 2WS3D 1YQ4D 2WDRC 3AEEC 3AE3C 1ZOYC 2WDRD 3AEED 4YTPD 1ZOYD 2BS4C 3AE7C 4YT0D 4KX6C 2WU2C 5C3JC 3VRAC 3AEGD 1YQ3C 3AEAD 2WU2D 1E7PC 3AE2C 3P4PD 3VRAD 4YTPC 1QLBC 1NEKC 4YTMC 2WDQC 4YT0C 1NEKD 3VR9D 1ZP0C 3P4SD 4YTMD 2BS3C 3VR8C 2WDQD 3P4RC 1ZP0D 3AEGC 3AEAC 3SFEC 2H89C 3AEBD 3VR8D 3P4RD 3AE9D 3P4PC 4YSXC 3SFED 2H89D 1KF6C 1NENC 4YSXD 1NEND 1KF6D 3P4QC 3CIRD 3P4QD 3AE4C 3AE1D 1L0VD 2B76D 3AE4D 3ABVD 3VR9C 3P4SC 2WP9C 3AE6C 2WP9D 3AEBC 3AE6D 3AE9C 4YSZC 3AE8C 3VRBC 4YSZD 2WQYD 3AE8D 3AEFC 3VRBD 3CIRC 3AE1C 3AEFD 3AE5C 2ACZC 3AE3D 1L0VC 2B76C 3AE5D 2ACZD 2WU5C 3ABVC 4YXDC 2WDVC 4YXDD 2WU5D 2FBWC 3SFDC 3AECC 2WDVD 3AEDC 2H88C 3AE7D 2FBWD 5C2TC 3SFDD 3AECD 3AEDD 4KX6D 2H88D 1KFYC 4YTNC 5C2TD 4YSYC 5C3JD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YQ3 D;  2WQY C;  1KFY D;  2WS3 C;  4YTN D;  1YQ4 C;  4YSY D;  2BS2 C;  3AE2 D;  2WS3 D;  1YQ4 D;  2WDR C;  3AEE C;  3AE3 C;  1ZOY C;  2WDR D;  3AEE D;  4YTP D;  1ZOY D;  2BS4 C;  3AE7 C;  4YT0 D;  4KX6 C;  2WU2 C;  5C3J C;  3VRA C;  3AEG D;  1YQ3 C;  3AEA D;  2WU2 D;  1E7P C;  3AE2 C;  3P4P D;  3VRA D;  4YTP C;  1QLB C;  1NEK C;  4YTM C;  2WDQ C;  4YT0 C;  1NEK D;  3VR9 D;  1ZP0 C;  3P4S D;  4YTM D;  2BS3 C;  3VR8 C;  2WDQ D;  3P4R C;  1ZP0 D;  3AEG C;  3AEA C;  3SFE C;  2H89 C;  3AEB D;  3VR8 D;  3P4R D;  3AE9 D;  3P4P C;  4YSX C;  3SFE D;  2H89 D;  1KF6 C;  1NEN C;  4YSX D;  1NEN D;  1KF6 D;  3P4Q C;  3CIR D;  3P4Q D;  3AE4 C;  3AE1 D;  1L0V D;  2B76 D;  3AE4 D;  3ABV D;  3VR9 C;  3P4S C;  2WP9 C;  3AE6 C;  2WP9 D;  3AEB C;  3AE6 D;  3AE9 C;  4YSZ C;  3AE8 C;  3VRB C;  4YSZ D;  2WQY D;  3AE8 D;  3AEF C;  3VRB D;  3CIR C;  3AE1 C;  3AEF D;  3AE5 C;  2ACZ C;  3AE3 D;  1L0V C;  2B76 C;  3AE5 D;  2ACZ D;  2WU5 C;  3ABV C;  4YXD C;  2WDV C;  4YXD D;  2WU5 D;  2FBW C;  3SFD C;  3AEC C;  2WDV D;  3AED C;  2H88 C;  3AE7 D;  2FBW D;  5C2T C;  3SFD D;  3AEC D;  3AED D;  4KX6 D;  2H88 D;  1KFY C;  4YTN C;  5C2T D;  4YSY C;  5C3J D; 
#chains in the Genus database with same CATH topology
 1YQ3 D;  2WQY C;  1KFY D;  2WS3 C;  4YTN D;  1YQ4 C;  4YSY D;  2BS2 C;  3AE2 D;  2WS3 D;  1YQ4 D;  4DDI A;  2WDR C;  3AEE C;  3AE3 C;  1ZOY C;  2WDR D;  3AEE D;  4YTP D;  1ZOY D;  2BS4 C;  3AE7 C;  4YT0 D;  4KX6 C;  2WU2 C;  5C3J C;  3VRA C;  3AEG D;  1YQ3 C;  3AEA D;  2WU2 D;  1E7P C;  3AE2 C;  3P4P D;  3VRA D;  4YTP C;  1QLB C;  1TFF A;  4DDG A;  1NEK C;  4YTM C;  2WDQ C;  4YT0 C;  1NEK D;  3VR9 D;  1ZP0 C;  3P4S D;  4YTM D;  2BS3 C;  3VR8 C;  2WDQ D;  3P4R C;  1ZP0 D;  3AEG C;  3AEA C;  4DHJ A;  3SFE C;  2H89 C;  3AEB D;  3VR8 D;  3P4R D;  3AE9 D;  3P4P C;  4YSX C;  3SFE D;  2H89 D;  1KF6 C;  1NEN C;  3VON A;  4YSX D;  1NEN D;  1KF6 D;  3P4Q C;  4LDT A;  3CIR D;  3P4Q D;  3AE4 C;  3AE1 D;  1L0V D;  2B76 D;  3AE4 D;  3ABV D;  3VR9 C;  3P4S C;  2WP9 C;  4DHZ A;  3AE6 C;  2WP9 D;  3AEB C;  3AE6 D;  3AE9 C;  4FJV A;  4YSZ C;  3AE8 C;  3VRB C;  4I6L A;  4YSZ D;  2WQY D;  3AE8 D;  3AEF C;  3VRB D;  3CIR C;  3AE1 C;  3AEF D;  3AE5 C;  2ACZ C;  3AE3 D;  1L0V C;  2B76 C;  3AE5 D;  2ACZ D;  2WU5 C;  3ABV C;  4DHI B;  4YXD C;  2WDV C;  4YXD D;  2WU5 D;  2FBW C;  2ZFY A;  3SFD C;  3AEC C;  2WDV D;  3AED C;  2H88 C;  3AE7 D;  2FBW D;  5C2T C;  3SFD D;  3AEC D;  3AED D;  4KX6 D;  2H88 D;  1KFY C;  4YTN C;  5C2T D;  4YSY C;  5C3J D; 
#chains in the Genus database with same CATH homology
 1YQ3 D;  2WQY C;  1KFY D;  2WS3 C;  4YTN D;  1YQ4 C;  4YSY D;  2BS2 C;  3AE2 D;  2WS3 D;  1YQ4 D;  2WDR C;  3AEE C;  3AE3 C;  1ZOY C;  2WDR D;  3AEE D;  4YTP D;  1ZOY D;  2BS4 C;  3AE7 C;  4YT0 D;  4KX6 C;  2WU2 C;  5C3J C;  3VRA C;  3AEG D;  1YQ3 C;  3AEA D;  2WU2 D;  1E7P C;  3AE2 C;  3P4P D;  3VRA D;  4YTP C;  1QLB C;  1NEK C;  4YTM C;  2WDQ C;  4YT0 C;  1NEK D;  3VR9 D;  1ZP0 C;  3P4S D;  4YTM D;  2BS3 C;  3VR8 C;  2WDQ D;  3P4R C;  1ZP0 D;  3AEG C;  3AEA C;  3SFE C;  2H89 C;  3AEB D;  3VR8 D;  3P4R D;  3AE9 D;  3P4P C;  4YSX C;  3SFE D;  2H89 D;  1KF6 C;  1NEN C;  4YSX D;  1NEN D;  1KF6 D;  3P4Q C;  3CIR D;  3P4Q D;  3AE4 C;  3AE1 D;  1L0V D;  2B76 D;  3AE4 D;  3ABV D;  3VR9 C;  3P4S C;  2WP9 C;  3AE6 C;  2WP9 D;  3AEB C;  3AE6 D;  3AE9 C;  4YSZ C;  3AE8 C;  3VRB C;  4YSZ D;  2WQY D;  3AE8 D;  3AEF C;  3VRB D;  3CIR C;  3AE1 C;  3AEF D;  3AE5 C;  2ACZ C;  3AE3 D;  1L0V C;  2B76 C;  3AE5 D;  2ACZ D;  2WU5 C;  3ABV C;  4YXD C;  2WDV C;  4YXD D;  2WU5 D;  2FBW C;  3SFD C;  3AEC C;  2WDV D;  3AED C;  2H88 C;  3AE7 D;  2FBW D;  5C2T C;  3SFD D;  3AEC D;  3AED D;  4KX6 D;  2H88 D;  1KFY C;  4YTN C;  5C2T D;  4YSY C;  5C3J D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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