3P8BA

X-ray crystal structure of pyrococcus furiosus transcription elongation factor spt4/5
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
60
structure length
60
Chain Sequence
SEKACRHCHYITSEDRCPVCGSRDLSEEWFDLVIIVDVENSEIAKKIGAKVPGKYAIRVR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase/transcription
source organism Pyrococcus furiosus
publication title RNA polymerase and transcription elongation factor Spt4/5 complex structure.
pubmed doi rcsb
molecule keywords DNA-directed RNA polymerase, subunit e''
total genus 10
structure length 60
sequence length 60
chains with identical sequence C
ec nomenclature
pdb deposition date 2010-10-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF06093 Spt4 Spt4/RpoE2 zinc finger
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.90 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 3p8bA00
4ZN1B 3QQCE 3P8BA 1RYQA 4ZN3B 3LPEB
chains in the Genus database with same CATH superfamily
4AR3A 3PIP1 1F4LA 1VZHA 1LKMA 1BRFA 2NVYL 5GADc 3S1NL 2AUSB 1NXEA 2DSXA 4A3JL 1FHMA 1IROA 1P7PA 1R0JA 2JI3A 4A3IL 2JA5L 2YU9L 3GTML 1H7VA 1Y1VL 2XJUA 1R0IA 4XGHA 3FDJA 2A69D 1LKOA 3LNLA 3LWPB 2E2HL 1SMUA 2M4YA 1PFUA 4BBSL 1VZIA 3LWRB 4ME3A 3S15L 1PFVA 3J7Z1 1TWFL 1S30A 5EINC 5MF6A 2PVEA 3MQKB 2R7ZL 1PFYA 1LTLA 5MFPA 2HVYC 3S17L 8RXNA 4U671 1YUXA 3PKIA 5K2ME 4A3GL 2ERSA 4C3IL 1RDVA 1BFYA 2CKCA 4RXNA 5IYDL 3MPSA 2B5ID 4GS7D 4A3EL 1VZGA 2APOB 2PPTA 4YWMA 3WWLA 1BE7A 1DVBA 2A6HD 5IYCL 1NXGA 5C3EL 4LHLA 2ZIXA 2V3BB 1BQ8A 1ODHA 1YK5A 3PL5A 4C2M1 2O5JD 3CQZL 3HOYL 4AHXA 4V196 5M5WL 2MS3A 4XXBB 1WCML 1WJVA 3KYWA 5MGNA 1R0HA 3PIO1 3S1QL 1BQ9A 2K2DA 2KKDA 3QQCE 3H9CA 3S1RL 3H97A 3GTOL 1T9PA 2H12A 2Z3RB 3S14L 1RYTA 5M3FL 2PMZP 3KYYA 5AI2A 5FLML 2VL6A 2C6BA 2JA8L 5DM71 4AI2A 2CR8A 3PO3L 3S2DL 4JAFA 4C3JL 2C6AA 1Z92B 3B08B 2BE5D 3P2AA 3H99A 1TWCL 3I4NL 2JA7L 2CKAA 2J9UB 2M4VA 4JADA 3VPBE 3KYVA 1B13A 2PSMC 3SS2A 1S24A 4BY7L 1IRNA 4BBRL 3S1ML 4YWLA 3LWOB 3PO2L 2JA6L 3PKJA 1RB9A 1IW7D 4AHWA 5MLC3 1Y1WL 3H9BA 4Y7NL 4A3FL 4JAGA 2E2IL 1QQTA 3H3VM 2QL0A 4AR6A 1R9TL 3ZG6A 3M3YL 1T9QA 4A3CL 1OWCA 3FKIL 1C09A 4AR4A 3GTJL 3HOVL 2JI2A 5AI3A 3M4OL 5AN9H 2GMGA 3HJYB 5MFZA 4A3KL 5M5YL 2VUML 3HKZP 2RDVA 3RZDL 3P8BA 1PFWA 1CAAA 3NFPI 3H0GL 4C3HL 1OWBA 2XJQA 4Y52L 5C44L 6RXNA 2NVQL 3HOUL 1T9OA 3JR7A 2R93L 4LHNA 1TWGL 4POGA 2NVTL 4QIWP 2XJRA 3HOWL 1IU6A 3WWNB 5IP7L 5IY0A 4JAEA 3HOZL 4WFN1 1S2ZA 5GAGc 2PYAA 5GAHc 2R92L 5C4XL 5JVH1 4A3DL 2XJSA 4AYBP 2WAQP 3RYGA 3PZAA 2M6OA 1I50L 1YUZA 4UY81 3KYXA 3J7Y1 4BY1L 4X6AL 3LWQB 5GAEc 1TWHL 1B71A 2RFKB 3PWFA 3HOXL 1QCVA 4ZN3B 4A3LL 3B0AB 3RZTA 2V0FA 3LWVB 3GTKL 1QYBA 4POFA 4E6YA 1DX8A 1K83L 5FJ8L 3K7AL 1B2OA 3QVDA 3RZ6A 1SMMA 2KN9A 1R0GA 1NNQA 2HR5A 1R0FA 3KYUA 1LKPA 5IYBL 1TWAL 1I3QL 4AHZA 3HAXC 2WB1P 3GTGL 4A93L 2V0EA 2XJVA 4AI3A 4G6BA 4TPUA 5IP9L 5DM61 3MSUA 2EY4E 2AQCA 3IU3I 2NYDA 3S16L 1YK4A 4BXXL 5M5XL 1RDGA 2L0ZA 1FHHA 2ERJA 1VCXA 4K9FA 2A6ED 4TVMA 3A44A 2NVXL 3HJWB 4AI1A 3GTQL 2M6PA 5C4JL 1E8JA 2B63L 1RWDA 3K35A 5JVG1 3RZOL 4B8CD 3LPEB 2PVXA 2JI1A 4AI0A 1IU5A 5H1Sc 4AR5A 2E2JL 4AHYA 2Y0SP 5RXNA 2XJTA 3GTLL 5EIOC 3S2HL 1SMWA 1CADA 3I4ML 2XJPA 4A3ML 2Z3QB 1B2JA 1SFOL 2AYJA 2A68D 1YV1A 1JYBA 1PZXA 4ZN1B 3GTPL 7RXNA 1RYQA 4A3BL 5M3ML 1ZRPA 1I6HL 2LCQA
chains in the Genus database with same CATH topology
3RZ6A 2O5JD 1SMMA 2GMGA 2KN9A 1R0GA 1NNQA 4AR3A 5MFZA 2HR5A 1R0FA 3PIP1 2RDVA 1VZHA 3KYUA 1LKPA 1LKMA 3P8BA 1BRFA 4AHXA 5GADc 4V196 1NXEA 2DSXA 1CAAA 3NFPI 4AHZA 1FHMA 1OWBA 1IROA 2MS3A 2XJQA 3KYWA 1WJVA 4XXBB 5MGNA 1R0HA 6RXNA 1R0JA 2JI3A 1T9OA 3PIO1 1BQ9A 2K2DA 2KKDA 2V0EA 2XJVA 1H7VA 3QQCE 4LHNA 4POGA 4AI3A 4G6BA 1T9PA 2XJUA 4TPUA 2H12A 3MSUA 5DM61 2Z3RB 1R0IA 4XGHA 2A69D 1LKOA 1RYTA 3LNLA 3IU3I 2NYDA 1SMUA 2M4YA 2XJRA 1YK4A 1VZIA 3KYYA 5AI2A 1IU6A 1RDGA 2VL6A 3WWNB 2C6BA 2L0ZA 5DM71 5IY0A 4ME3A 4JAEA 1FHHA 2ERJA 4AI2A 2CR8A 1VCXA 4K9FA 4WFN1 2A6ED 1S2ZA 4TVMA 3A44A 3J7Z1 1S30A 4JAFA 2C6AA 5EINC 1Z92B 3B08B 2BE5D 5MF6A 2PVEA 5GAGc 4AI1A 2M6PA 3P2AA 2PYAA 5GAHc 1E8JA 1RWDA 2CKAA 2J9UB 3K35A 5JVG1 5JVH1 1LTLA 5MFPA 2M4VA 2XJSA 4JADA 3VPBE 3KYVA 1B13A 2PSMC 3RYGA 3SS2A 4B8CD 3LPEB 2M6OA 3PZAA 1S24A 2PVXA 2JI1A 4AI0A 8RXNA 1IU5A 1IRNA 5H1Sc 4U671 4AR5A 1YUZA 4AHYA 4UY81 4YWLA 3KYXA 1YUXA 2XJTA 5RXNA 3J7Y1 3PKIA 5K2ME 2ERSA 5EIOC 5GAEc 1RDVA 3PKJA 1BFYA 1RB9A 1SMWA 2CKCA 1IW7D 4AHWA 5MLC3 4RXNA 1B71A 4JAGA 3MPSA 2B5ID 3PWFA 1CADA 4GS7D 1VZGA 2XJPA 2QL0A 1QCVA 4AR6A 2Z3QB 1B2JA 2PPTA 4YWMA 3WWLA 3ZG6A 4ZN3B 2AYJA 1BE7A 3B0AB 2A68D 3RZTA 1T9QA 1OWCA 2V0FA 1YV1A 1C09A 4AR4A 1DVBA 2A6HD 1NXGA 1QYBA 4LHLA 2JI2A 5AI3A 4POFA 1JYBA 4E6YA 2ZIXA 1DX8A 4ZN1B 7RXNA 1RYQA 2V3BB 1BQ8A 1ODHA 1B2OA 5AN9H 1ZRPA 1YK5A 2LCQA 3QVDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZN1 B;  3QQC E;  3P8B A;  1RYQ A;  4ZN3 B;  3LPE B; 
#chains in the Genus database with same CATH topology
 4AR3 A;  3PIP 1;  1F4L A;  1VZH A;  1LKM A;  1BRF A;  2NVY L;  5GAD c;  3S1N L;  2AUS B;  1NXE A;  2DSX A;  4A3J L;  1FHM A;  1IRO A;  1P7P A;  1R0J A;  2JI3 A;  4A3I L;  2JA5 L;  2YU9 L;  3GTM L;  1H7V A;  1Y1V L;  2XJU A;  1R0I A;  4XGH A;  3FDJ A;  2A69 D;  1LKO A;  3LNL A;  3LWP B;  2E2H L;  1SMU A;  2M4Y A;  1PFU A;  4BBS L;  1VZI A;  3LWR B;  4ME3 A;  3S15 L;  1PFV A;  3J7Z 1;  1TWF L;  1S30 A;  5EIN C;  5MF6 A;  2PVE A;  3MQK B;  2R7Z L;  1PFY A;  1LTL A;  5MFP A;  2HVY C;  3S17 L;  8RXN A;  4U67 1;  1YUX A;  3PKI A;  5K2M E;  4A3G L;  2ERS A;  4C3I L;  1RDV A;  1BFY A;  2CKC A;  4RXN A;  5IYD L;  3MPS A;  2B5I D;  4GS7 D;  4A3E L;  1VZG A;  2APO B;  2PPT A;  4YWM A;  3WWL A;  1BE7 A;  1DVB A;  2A6H D;  5IYC L;  1NXG A;  5C3E L;  4LHL A;  2ZIX A;  2V3B B;  1BQ8 A;  1ODH A;  1YK5 A;  3PL5 A;  4C2M 1;  2O5J D;  3CQZ L;  3HOY L;  4AHX A;  4V19 6;  5M5W L;  2MS3 A;  4XXB B;  1WCM L;  1WJV A;  3KYW A;  5MGN A;  1R0H A;  3PIO 1;  3S1Q L;  1BQ9 A;  2K2D A;  2KKD A;  3QQC E;  3H9C A;  3S1R L;  3H97 A;  3GTO L;  1T9P A;  2H12 A;  2Z3R B;  3S14 L;  1RYT A;  5M3F L;  2PMZ P;  3KYY A;  5AI2 A;  5FLM L;  2VL6 A;  2C6B A;  2JA8 L;  5DM7 1;  4AI2 A;  2CR8 A;  3PO3 L;  3S2D L;  4JAF A;  4C3J L;  2C6A A;  1Z92 B;  3B08 B;  2BE5 D;  3P2A A;  3H99 A;  1TWC L;  3I4N L;  2JA7 L;  2CKA A;  2J9U B;  2M4V A;  4JAD A;  3VPB E;  3KYV A;  1B13 A;  2PSM C;  3SS2 A;  1S24 A;  4BY7 L;  1IRN A;  4BBR L;  3S1M L;  4YWL A;  3LWO B;  3PO2 L;  2JA6 L;  3PKJ A;  1RB9 A;  1IW7 D;  4AHW A;  5MLC 3;  1Y1W L;  3H9B A;  4Y7N L;  4A3F L;  4JAG A;  2E2I L;  1QQT A;  3H3V M;  2QL0 A;  4AR6 A;  1R9T L;  3ZG6 A;  3M3Y L;  1T9Q A;  4A3C L;  1OWC A;  3FKI L;  1C09 A;  4AR4 A;  3GTJ L;  3HOV L;  2JI2 A;  5AI3 A;  3M4O L;  5AN9 H;  2GMG A;  3HJY B;  5MFZ A;  4A3K L;  5M5Y L;  2VUM L;  3HKZ P;  2RDV A;  3RZD L;  3P8B A;  1PFW A;  1CAA A;  3NFP I;  3H0G L;  4C3H L;  1OWB A;  2XJQ A;  4Y52 L;  5C44 L;  6RXN A;  2NVQ L;  3HOU L;  1T9O A;  3JR7 A;  2R93 L;  4LHN A;  1TWG L;  4POG A;  2NVT L;  4QIW P;  2XJR A;  3HOW L;  1IU6 A;  3WWN B;  5IP7 L;  5IY0 A;  4JAE A;  3HOZ L;  4WFN 1;  1S2Z A;  5GAG c;  2PYA A;  5GAH c;  2R92 L;  5C4X L;  5JVH 1;  4A3D L;  2XJS A;  4AYB P;  2WAQ P;  3RYG A;  3PZA A;  2M6O A;  1I50 L;  1YUZ A;  4UY8 1;  3KYX A;  3J7Y 1;  4BY1 L;  4X6A L;  3LWQ B;  5GAE c;  1TWH L;  1B71 A;  2RFK B;  3PWF A;  3HOX L;  1QCV A;  4ZN3 B;  4A3L L;  3B0A B;  3RZT A;  2V0F A;  3LWV B;  3GTK L;  1QYB A;  4POF A;  4E6Y A;  1DX8 A;  1K83 L;  5FJ8 L;  3K7A L;  1B2O A;  3QVD A;  3RZ6 A;  1SMM A;  2KN9 A;  1R0G A;  1NNQ A;  2HR5 A;  1R0F A;  3KYU A;  1LKP A;  5IYB L;  1TWA L;  1I3Q L;  4AHZ A;  3HAX C;  2WB1 P;  3GTG L;  4A93 L;  2V0E A;  2XJV A;  4AI3 A;  4G6B A;  4TPU A;  5IP9 L;  5DM6 1;  3MSU A;  2EY4 E;  2AQC A;  3IU3 I;  2NYD A;  3S16 L;  1YK4 A;  4BXX L;  5M5X L;  1RDG A;  2L0Z A;  1FHH A;  2ERJ A;  1VCX A;  4K9F A;  2A6E D;  4TVM A;  3A44 A;  2NVX L;  3HJW B;  4AI1 A;  3GTQ L;  2M6P A;  5C4J L;  1E8J A;  2B63 L;  1RWD A;  3K35 A;  5JVG 1;  3RZO L;  4B8C D;  3LPE B;  2PVX A;  2JI1 A;  4AI0 A;  1IU5 A;  5H1S c;  4AR5 A;  2E2J L;  4AHY A;  2Y0S P;  5RXN A;  2XJT A;  3GTL L;  5EIO C;  3S2H L;  1SMW A;  1CAD A;  3I4M L;  2XJP A;  4A3M L;  2Z3Q B;  1B2J A;  1SFO L;  2AYJ A;  2A68 D;  1YV1 A;  1JYB A;  1PZX A;  4ZN1 B;  3GTP L;  7RXN A;  1RYQ A;  4A3B L;  5M3M L;  1ZRP A;  1I6H L;  2LCQ A; 
#chains in the Genus database with same CATH homology
 3RZ6 A;  2O5J D;  1SMM A;  2GMG A;  2KN9 A;  1R0G A;  1NNQ A;  4AR3 A;  5MFZ A;  2HR5 A;  1R0F A;  3PIP 1;  2RDV A;  1VZH A;  3KYU A;  1LKP A;  1LKM A;  3P8B A;  1BRF A;  4AHX A;  5GAD c;  4V19 6;  1NXE A;  2DSX A;  1CAA A;  3NFP I;  4AHZ A;  1FHM A;  1OWB A;  1IRO A;  2MS3 A;  2XJQ A;  3KYW A;  1WJV A;  4XXB B;  5MGN A;  1R0H A;  6RXN A;  1R0J A;  2JI3 A;  1T9O A;  3PIO 1;  1BQ9 A;  2K2D A;  2KKD A;  2V0E A;  2XJV A;  1H7V A;  3QQC E;  4LHN A;  4POG A;  4AI3 A;  4G6B A;  1T9P A;  2XJU A;  4TPU A;  2H12 A;  3MSU A;  5DM6 1;  2Z3R B;  1R0I A;  4XGH A;  2A69 D;  1LKO A;  1RYT A;  3LNL A;  3IU3 I;  2NYD A;  1SMU A;  2M4Y A;  2XJR A;  1YK4 A;  1VZI A;  3KYY A;  5AI2 A;  1IU6 A;  1RDG A;  2VL6 A;  3WWN B;  2C6B A;  2L0Z A;  5DM7 1;  5IY0 A;  4ME3 A;  4JAE A;  1FHH A;  2ERJ A;  4AI2 A;  2CR8 A;  1VCX A;  4K9F A;  4WFN 1;  2A6E D;  1S2Z A;  4TVM A;  3A44 A;  3J7Z 1;  1S30 A;  4JAF A;  2C6A A;  5EIN C;  1Z92 B;  3B08 B;  2BE5 D;  5MF6 A;  2PVE A;  5GAG c;  4AI1 A;  2M6P A;  3P2A A;  2PYA A;  5GAH c;  1E8J A;  1RWD A;  2CKA A;  2J9U B;  3K35 A;  5JVG 1;  5JVH 1;  1LTL A;  5MFP A;  2M4V A;  2XJS A;  4JAD A;  3VPB E;  3KYV A;  1B13 A;  2PSM C;  3RYG A;  3SS2 A;  4B8C D;  3LPE B;  2M6O A;  3PZA A;  1S24 A;  2PVX A;  2JI1 A;  4AI0 A;  8RXN A;  1IU5 A;  1IRN A;  5H1S c;  4U67 1;  4AR5 A;  1YUZ A;  4AHY A;  4UY8 1;  4YWL A;  3KYX A;  1YUX A;  2XJT A;  5RXN A;  3J7Y 1;  3PKI A;  5K2M E;  2ERS A;  5EIO C;  5GAE c;  1RDV A;  3PKJ A;  1BFY A;  1RB9 A;  1SMW A;  2CKC A;  1IW7 D;  4AHW A;  5MLC 3;  4RXN A;  1B71 A;  4JAG A;  3MPS A;  2B5I D;  3PWF A;  1CAD A;  4GS7 D;  1VZG A;  2XJP A;  2QL0 A;  1QCV A;  4AR6 A;  2Z3Q B;  1B2J A;  2PPT A;  4YWM A;  3WWL A;  3ZG6 A;  4ZN3 B;  2AYJ A;  1BE7 A;  3B0A B;  2A68 D;  3RZT A;  1T9Q A;  1OWC A;  2V0F A;  1YV1 A;  1C09 A;  4AR4 A;  1DVB A;  2A6H D;  1NXG A;  1QYB A;  4LHL A;  2JI2 A;  5AI3 A;  4POF A;  1JYB A;  4E6Y A;  2ZIX A;  1DX8 A;  4ZN1 B;  7RXN A;  1RYQ A;  2V3B B;  1BQ8 A;  1ODH A;  1B2O A;  5AN9 H;  1ZRP A;  1YK5 A;  2LCQ A;  3QVD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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