3PCCM

Structure of protocatechuate 3,4-dioxygenase complexed with 4-hydroxybenzoate
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
236
structure length
233
Chain Sequence
PAQDNSRFVIRDRNWHPKALTPDYKTSIARSPRQALVSIPQSISETTGPNFSHLGFGAHDHDLLLNFGLPIGERIIVAGRVVDQYGKPVPNTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRCLTDSDGYYSFRTIKPGPYPWRNGPNDWRPAHIHFGISGPSIATKLITQLYFEGDPLIPMCPIVKSIANPEAVQQLIAKLDMNNANPMDCLAYRFDIVLRGQRKTHFE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Dioxygenase
molecule keywords PROTOCATECHUATE 3,4-DIOXYGENASE
publication title Structures of competitive inhibitor complexes of protocatechuate 3,4-dioxygenase: multiple exogenous ligand binding orientations within the active site.
pubmed doi rcsb
total genus 55
structure length 233
sequence length 236
chains with identical sequence N, O, P, Q, R
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 1997-04-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
M PF00775 Dioxygenase_C Dioxygenase
M PF12391 PCDO_beta_N Protocatechuate 3,4-dioxygenase beta subunit N terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 3pccM00
3HGIA 2BURB 1YKMA 1EO2A 4ILVA 3MV4M 2BUYA 2XSRA 2BUZB 2BUQB 3I4YA 3LKTM 2BUTB 3PCJM 3PCLA 4WHSD 4WHOB 1YKLB 3MI1A 1DLQA 3T67A 3MI5M 1YKPA 3O6JA 3LXVA 3I51A 4ILTA 3LMXA 1YKNA 2BUXA 2BUVA 3MV6M 2BV0A 3PCLM 2BOYA 3PCNA 1DLTA 4WHQB 2BUWB 3PCDA 1YKKA 3PCGM 3MFLA 3PCEM 3PCIA 3PCCM 1EOCB 3T63M 4WHRF 1EOBA 1YKMB 1EO2B 3PCKA 2BUYB 4WHRA 3HHYA 4WHOD 3O6RA 2BUMA 2XSUA 1YKPB 3MI1M 3PCAA 3HJQA 3I4VA 4WHSA 1DLMA 3N9TA 3PCMA 1EOAA 1YKNB 3T67M 2BUXB 3LXVM 2BV0B 1YKLA 5TD3A 3LMXM 4WHPA 2PCDA 3PCBM 1EO9A 3O5UA 1YKOA 3PCNM 3HJSA 1YKKB 2BUUA 3PCFA 3PCBA 3PCDM 3MFLM 3PCIM 3MV4A 1S9AA 1EOBB 3HKPA 3HHXA 2XSVA 2BURA 4WHRB 3LKTA 3PCKM 2BUZA 3PCJA 2BUMB 2BUQA 1TMXA 2BUTA 3MI5A 4WHOA 2BUVB 3PCHA 4WHSB 3MV6A 1EOAB 3PCAM 4WHPB 1EO9B 3PCMM 3HJ8A 2AZQA 1YKOB 4WHPD 3PCHM 2PCDM 3PCGA 4WHQA 3PCEA 3TH1A 2BUWA 3PCCA 2BUUB 3O32A 3T63A 1DMHA 3PCFM 1EOCA
chains in the Genus database with same CATH superfamily
3HGIA 2BURB 1YKMA 1EO2A 4ILVA 3MV4M 2BUYA 2XSRA 2BUZB 2BUQB 3I4YA 3LKTM 2BUTB 3PCJM 3PCLA 4WHSD 4WHOB 1YKLB 3MI1A 1DLQA 3T67A 3MI5M 1YKPA 3O6JA 3LXVA 3I51A 4ILTA 3LMXA 1YKNA 2BUXA 2BUVA 3MV6M 2BV0A 3PCLM 2BOYA 3PCNA 1DLTA 4WHQB 2BUWB 3PCDA 1YKKA 3PCGM 3MFLA 3PCEM 3PCIA 3PCCM 1EOCB 3T63M 4WHRF 1EOBA 1YKMB 1EO2B 3PCKA 2BUYB 4WHRA 3HHYA 4WHOD 3O6RA 2BUMA 2XSUA 1YKPB 3MI1M 3PCAA 3HJQA 3I4VA 4WHSA 1DLMA 3N9TA 3PCMA 1EOAA 1YKNB 3T67M 2BUXB 3LXVM 2BV0B 1YKLA 5TD3A 3LMXM 4WHPA 2PCDA 3PCBM 1EO9A 3O5UA 1YKOA 3PCNM 3HJSA 1YKKB 2BUUA 3PCFA 3PCBA 3PCDM 3MFLM 3PCIM 3MV4A 1S9AA 1EOBB 3HKPA 3HHXA 2XSVA 2BURA 4WHRB 3LKTA 3PCKM 2BUZA 3PCJA 2BUMB 2BUQA 1TMXA 2BUTA 3MI5A 4WHOA 2BUVB 3PCHA 4WHSB 3MV6A 1EOAB 3PCAM 4WHPB 1EO9B 3PCMM 3HJ8A 2AZQA 1YKOB 4WHPD 3PCHM 2PCDM 3PCGA 4WHQA 3PCEA 3TH1A 2BUWA 3PCCA 2BUUB 3O32A 3T63A 1DMHA 3PCFM 1EOCA
chains in the Genus database with same CATH topology
3HGIA 2BURB 1YKMA 1EO2A 4ILVA 3MV4M 2BUYA 2XSRA 2BUZB 2BUQB 3I4YA 3LKTM 2BUTB 3PCJM 3PCLA 4WHSD 4WHOB 1YKLB 3MI1A 1DLQA 3T67A 3MI5M 1YKPA 3O6JA 3LXVA 3I51A 4ILTA 3LMXA 1YKNA 2BUXA 2BUVA 3MV6M 2BV0A 3PCLM 2BOYA 3PCNA 1DLTA 4WHQB 2BUWB 3PCDA 1YKKA 3PCGM 3MFLA 3PCEM 3PCIA 3PCCM 1EOCB 3T63M 4WHRF 1EOBA 1YKMB 1EO2B 3PCKA 2BUYB 4WHRA 3HHYA 4WHOD 3O6RA 2BUMA 2XSUA 1YKPB 3MI1M 3PCAA 3HJQA 3I4VA 4WHSA 1DLMA 3N9TA 3PCMA 1EOAA 1YKNB 3T67M 2BUXB 3LXVM 2BV0B 1YKLA 5TD3A 3LMXM 4WHPA 2PCDA 3PCBM 1EO9A 3O5UA 1YKOA 3PCNM 3HJSA 1YKKB 2BUUA 3PCFA 3PCBA 3PCDM 3MFLM 3PCIM 3MV4A 1S9AA 1EOBB 3HKPA 3HHXA 2XSVA 2BURA 4WHRB 3LKTA 3PCKM 2BUZA 3PCJA 2BUMB 2BUQA 1TMXA 2BUTA 3MI5A 4WHOA 2BUVB 3PCHA 4WHSB 3MV6A 1EOAB 3PCAM 4WHPB 1EO9B 3PCMM 3HJ8A 2AZQA 1YKOB 4WHPD 3PCHM 2PCDM 3PCGA 4WHQA 3PCEA 3TH1A 2BUWA 3PCCA 2BUUB 3O32A 3T63A 1DMHA 3PCFM 1EOCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HGI A;  2BUR B;  1YKM A;  1EO2 A;  4ILV A;  3MV4 M;  2BUY A;  2XSR A;  2BUZ B;  2BUQ B;  3I4Y A;  3LKT M;  2BUT B;  3PCJ M;  3PCL A;  4WHS D;  4WHO B;  1YKL B;  3MI1 A;  1DLQ A;  3T67 A;  3MI5 M;  1YKP A;  3O6J A;  3LXV A;  3I51 A;  4ILT A;  3LMX A;  1YKN A;  2BUX A;  2BUV A;  3MV6 M;  2BV0 A;  3PCL M;  2BOY A;  3PCN A;  1DLT A;  4WHQ B;  2BUW B;  3PCD A;  1YKK A;  3PCG M;  3MFL A;  3PCE M;  3PCI A;  3PCC M;  1EOC B;  3T63 M;  4WHR F;  1EOB A;  1YKM B;  1EO2 B;  3PCK A;  2BUY B;  4WHR A;  3HHY A;  4WHO D;  3O6R A;  2BUM A;  2XSU A;  1YKP B;  3MI1 M;  3PCA A;  3HJQ A;  3I4V A;  4WHS A;  1DLM A;  3N9T A;  3PCM A;  1EOA A;  1YKN B;  3T67 M;  2BUX B;  3LXV M;  2BV0 B;  1YKL A;  5TD3 A;  3LMX M;  4WHP A;  2PCD A;  3PCB M;  1EO9 A;  3O5U A;  1YKO A;  3PCN M;  3HJS A;  1YKK B;  2BUU A;  3PCF A;  3PCB A;  3PCD M;  3MFL M;  3PCI M;  3MV4 A;  1S9A A;  1EOB B;  3HKP A;  3HHX A;  2XSV A;  2BUR A;  4WHR B;  3LKT A;  3PCK M;  2BUZ A;  3PCJ A;  2BUM B;  2BUQ A;  1TMX A;  2BUT A;  3MI5 A;  4WHO A;  2BUV B;  3PCH A;  4WHS B;  3MV6 A;  1EOA B;  3PCA M;  4WHP B;  1EO9 B;  3PCM M;  3HJ8 A;  2AZQ A;  1YKO B;  4WHP D;  3PCH M;  2PCD M;  3PCG A;  4WHQ A;  3PCE A;  3TH1 A;  2BUW A;  3PCC A;  2BUU B;  3O32 A;  3T63 A;  1DMH A;  3PCF M;  1EOC A; 
#chains in the Genus database with same CATH topology
 3HGI A;  2BUR B;  1YKM A;  1EO2 A;  4ILV A;  3MV4 M;  2BUY A;  2XSR A;  2BUZ B;  2BUQ B;  3I4Y A;  3LKT M;  2BUT B;  3PCJ M;  3PCL A;  4WHS D;  4WHO B;  1YKL B;  3MI1 A;  1DLQ A;  3T67 A;  3MI5 M;  1YKP A;  3O6J A;  3LXV A;  3I51 A;  4ILT A;  3LMX A;  1YKN A;  2BUX A;  2BUV A;  3MV6 M;  2BV0 A;  3PCL M;  2BOY A;  3PCN A;  1DLT A;  4WHQ B;  2BUW B;  3PCD A;  1YKK A;  3PCG M;  3MFL A;  3PCE M;  3PCI A;  3PCC M;  1EOC B;  3T63 M;  4WHR F;  1EOB A;  1YKM B;  1EO2 B;  3PCK A;  2BUY B;  4WHR A;  3HHY A;  4WHO D;  3O6R A;  2BUM A;  2XSU A;  1YKP B;  3MI1 M;  3PCA A;  3HJQ A;  3I4V A;  4WHS A;  1DLM A;  3N9T A;  3PCM A;  1EOA A;  1YKN B;  3T67 M;  2BUX B;  3LXV M;  2BV0 B;  1YKL A;  5TD3 A;  3LMX M;  4WHP A;  2PCD A;  3PCB M;  1EO9 A;  3O5U A;  1YKO A;  3PCN M;  3HJS A;  1YKK B;  2BUU A;  3PCF A;  3PCB A;  3PCD M;  3MFL M;  3PCI M;  3MV4 A;  1S9A A;  1EOB B;  3HKP A;  3HHX A;  2XSV A;  2BUR A;  4WHR B;  3LKT A;  3PCK M;  2BUZ A;  3PCJ A;  2BUM B;  2BUQ A;  1TMX A;  2BUT A;  3MI5 A;  4WHO A;  2BUV B;  3PCH A;  4WHS B;  3MV6 A;  1EOA B;  3PCA M;  4WHP B;  1EO9 B;  3PCM M;  3HJ8 A;  2AZQ A;  1YKO B;  4WHP D;  3PCH M;  2PCD M;  3PCG A;  4WHQ A;  3PCE A;  3TH1 A;  2BUW A;  3PCC A;  2BUU B;  3O32 A;  3T63 A;  1DMH A;  3PCF M;  1EOC A; 
#chains in the Genus database with same CATH homology
 3HGI A;  2BUR B;  1YKM A;  1EO2 A;  4ILV A;  3MV4 M;  2BUY A;  2XSR A;  2BUZ B;  2BUQ B;  3I4Y A;  3LKT M;  2BUT B;  3PCJ M;  3PCL A;  4WHS D;  4WHO B;  1YKL B;  3MI1 A;  1DLQ A;  3T67 A;  3MI5 M;  1YKP A;  3O6J A;  3LXV A;  3I51 A;  4ILT A;  3LMX A;  1YKN A;  2BUX A;  2BUV A;  3MV6 M;  2BV0 A;  3PCL M;  2BOY A;  3PCN A;  1DLT A;  4WHQ B;  2BUW B;  3PCD A;  1YKK A;  3PCG M;  3MFL A;  3PCE M;  3PCI A;  3PCC M;  1EOC B;  3T63 M;  4WHR F;  1EOB A;  1YKM B;  1EO2 B;  3PCK A;  2BUY B;  4WHR A;  3HHY A;  4WHO D;  3O6R A;  2BUM A;  2XSU A;  1YKP B;  3MI1 M;  3PCA A;  3HJQ A;  3I4V A;  4WHS A;  1DLM A;  3N9T A;  3PCM A;  1EOA A;  1YKN B;  3T67 M;  2BUX B;  3LXV M;  2BV0 B;  1YKL A;  5TD3 A;  3LMX M;  4WHP A;  2PCD A;  3PCB M;  1EO9 A;  3O5U A;  1YKO A;  3PCN M;  3HJS A;  1YKK B;  2BUU A;  3PCF A;  3PCB A;  3PCD M;  3MFL M;  3PCI M;  3MV4 A;  1S9A A;  1EOB B;  3HKP A;  3HHX A;  2XSV A;  2BUR A;  4WHR B;  3LKT A;  3PCK M;  2BUZ A;  3PCJ A;  2BUM B;  2BUQ A;  1TMX A;  2BUT A;  3MI5 A;  4WHO A;  2BUV B;  3PCH A;  4WHS B;  3MV6 A;  1EOA B;  3PCA M;  4WHP B;  1EO9 B;  3PCM M;  3HJ8 A;  2AZQ A;  1YKO B;  4WHP D;  3PCH M;  2PCD M;  3PCG A;  4WHQ A;  3PCE A;  3TH1 A;  2BUW A;  3PCC A;  2BUU B;  3O32 A;  3T63 A;  1DMH A;  3PCF M;  1EOC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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