3PCHA

Structure of protocatechuate 3,4-dioxygenase complexed with 3-chloro-4-hydroxybenzoate
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
200
structure length
200
Chain Sequence
PIELLPETPSQTAGPYVHIGLALEAAGNPTRDQEIWNRLAKPDAPGEHILLLGQVYDGNGHLVRDSFLEVWQADANGEYQDAYNLENAFNSFGRTATTFDAGEWTLHTVKPGVVNNAAGVPMAPHINISLFARGINIHLHTRLYFDDEAQANAKCPVLNLIEQPQRRETLIAKRCEVDGKTAYRFDIRIQGEGETVFFDF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dioxygenase
molecule keywords PROTOCATECHUATE 3,4-DIOXYGENASE
publication title Structures of competitive inhibitor complexes of protocatechuate 3,4-dioxygenase: multiple exogenous ligand binding orientations within the active site.
pubmed doi rcsb
total genus 40
structure length 200
sequence length 200
chains with identical sequence B, C, D, E, F
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 1997-07-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00775 Dioxygenase_C Dioxygenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 3pchA00
1EOBB 4WHSD 2BUWB 3PCDM 2BOYA 3I4VA 4WHQA 3PCJA 3MV4M 3O32A 2PCDM 3MI1A 1DLTA 1EO2B 5TD3A 1YKPB 2BV0B 2PCDA 1YKOB 4ILTA 1EOCB 1YKLB 3T63M 3T67M 4WHOA 1YKKB 2BUUB 4WHRA 3LKTA 2BUQB 3MI5M 3PCJM 3PCKA 3HHYA 3I51A 4WHPA 2BUXA 2BUZB 3PCEM 1EO9B 3MI1M 3MI5A 3PCEA 3PCIM 2BURA 3PCFA 3PCIA 4WHOD 4WHSB 1YKMB 2BUWA 3MV6A 3PCHM 3PCAA 3HKPA 2BUYB 3LKTM 2BUVB 3HJ8A 3PCHA 3HJQA 3PCKM 4WHPD 1EO2A 1YKPA 2BV0A 2BUTB 2BUMB 4WHOB 1YKNB 3LMXM 1YKOA 1EOCA 1EOAB 1YKLA 3LMXA 3PCFM 3PCNA 3PCGA 2BUXB 4ILVA 3MV6M 3MFLA 3PCAM 3PCLA 4WHQB 1EOBA 3LXVA 1EO9A 3HGIA 3PCBA 3PCMM 3PCCA 2BURB 3HHXA 1DMHA 3O5UA 3PCMA 4WHRF 3N9TA 2XSRA 3TH1A 4WHSA 1YKMA 3O6RA 1TMXA 3PCDA 3PCNM 2BUYA 3PCGM 4WHRB 2XSUA 2BUVA 3MFLM 3O6JA 1YKKA 3MV4A 3HJSA 3PCLM 1DLQA 1DLMA 2BUUA 4WHPB 2BUQA 3LXVM 3PCBM 3I4YA 2BUTA 2BUMA 3PCCM 2AZQA 1YKNA 2BUZA 1EOAA 1S9AA 3T63A 2XSVA 3T67A
chains in the Genus database with same CATH superfamily
1EOBB 4WHSD 2BUWB 3PCDM 2BOYA 3I4VA 4WHQA 3PCJA 3MV4M 3O32A 2PCDM 3MI1A 1DLTA 1EO2B 5TD3A 1YKPB 2BV0B 2PCDA 1YKOB 4ILTA 1EOCB 1YKLB 3T63M 3T67M 4WHOA 1YKKB 2BUUB 4WHRA 3LKTA 2BUQB 3MI5M 3PCJM 3PCKA 3HHYA 3I51A 4WHPA 2BUXA 2BUZB 3PCEM 1EO9B 3MI1M 3MI5A 3PCEA 3PCIM 2BURA 3PCFA 3PCIA 4WHOD 4WHSB 1YKMB 2BUWA 3MV6A 3PCHM 3PCAA 3HKPA 2BUYB 3LKTM 2BUVB 3HJ8A 3PCHA 3HJQA 3PCKM 4WHPD 1EO2A 1YKPA 2BV0A 2BUTB 2BUMB 4WHOB 1YKNB 3LMXM 1YKOA 1EOCA 1EOAB 1YKLA 3LMXA 3PCFM 3PCNA 3PCGA 2BUXB 4ILVA 3MV6M 3MFLA 3PCAM 3PCLA 4WHQB 1EOBA 3LXVA 1EO9A 3HGIA 3PCBA 3PCMM 3PCCA 2BURB 3HHXA 1DMHA 3O5UA 3PCMA 4WHRF 3N9TA 2XSRA 3TH1A 4WHSA 1YKMA 3O6RA 1TMXA 3PCDA 3PCNM 2BUYA 3PCGM 4WHRB 2XSUA 2BUVA 3MFLM 3O6JA 1YKKA 3MV4A 3HJSA 3PCLM 1DLQA 1DLMA 2BUUA 4WHPB 2BUQA 3LXVM 3PCBM 3I4YA 2BUTA 2BUMA 3PCCM 2AZQA 1YKNA 2BUZA 1EOAA 1S9AA 3T63A 2XSVA 3T67A
chains in the Genus database with same CATH topology
1EOBB 4WHSD 2BUWB 3PCDM 2BOYA 3I4VA 4WHQA 3PCJA 3MV4M 3O32A 2PCDM 3MI1A 1DLTA 1EO2B 5TD3A 1YKPB 2BV0B 2PCDA 1YKOB 4ILTA 1EOCB 1YKLB 3T63M 3T67M 4WHOA 1YKKB 2BUUB 4WHRA 3LKTA 2BUQB 3MI5M 3PCJM 3PCKA 3HHYA 3I51A 4WHPA 2BUXA 2BUZB 3PCEM 1EO9B 3MI1M 3MI5A 3PCEA 3PCIM 2BURA 3PCFA 3PCIA 4WHOD 4WHSB 1YKMB 2BUWA 3MV6A 3PCHM 3PCAA 3HKPA 2BUYB 3LKTM 2BUVB 3HJ8A 3PCHA 3HJQA 3PCKM 4WHPD 1EO2A 1YKPA 2BV0A 2BUTB 2BUMB 4WHOB 1YKNB 3LMXM 1YKOA 1EOCA 1EOAB 1YKLA 3LMXA 3PCFM 3PCNA 3PCGA 2BUXB 4ILVA 3MV6M 3MFLA 3PCAM 3PCLA 4WHQB 1EOBA 3LXVA 1EO9A 3HGIA 3PCBA 3PCMM 3PCCA 2BURB 3HHXA 1DMHA 3O5UA 3PCMA 4WHRF 3N9TA 2XSRA 3TH1A 4WHSA 1YKMA 3O6RA 1TMXA 3PCDA 3PCNM 2BUYA 3PCGM 4WHRB 2XSUA 2BUVA 3MFLM 3O6JA 1YKKA 3MV4A 3HJSA 3PCLM 1DLQA 1DLMA 2BUUA 4WHPB 2BUQA 3LXVM 3PCBM 3I4YA 2BUTA 2BUMA 3PCCM 2AZQA 1YKNA 2BUZA 1EOAA 1S9AA 3T63A 2XSVA 3T67A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EOB B;  4WHS D;  2BUW B;  3PCD M;  2BOY A;  3I4V A;  4WHQ A;  3PCJ A;  3MV4 M;  3O32 A;  2PCD M;  3MI1 A;  1DLT A;  1EO2 B;  5TD3 A;  1YKP B;  2BV0 B;  2PCD A;  1YKO B;  4ILT A;  1EOC B;  1YKL B;  3T63 M;  3T67 M;  4WHO A;  1YKK B;  2BUU B;  4WHR A;  3LKT A;  2BUQ B;  3MI5 M;  3PCJ M;  3PCK A;  3HHY A;  3I51 A;  4WHP A;  2BUX A;  2BUZ B;  3PCE M;  1EO9 B;  3MI1 M;  3MI5 A;  3PCE A;  3PCI M;  2BUR A;  3PCF A;  3PCI A;  4WHO D;  4WHS B;  1YKM B;  2BUW A;  3MV6 A;  3PCH M;  3PCA A;  3HKP A;  2BUY B;  3LKT M;  2BUV B;  3HJ8 A;  3PCH A;  3HJQ A;  3PCK M;  4WHP D;  1EO2 A;  1YKP A;  2BV0 A;  2BUT B;  2BUM B;  4WHO B;  1YKN B;  3LMX M;  1YKO A;  1EOC A;  1EOA B;  1YKL A;  3LMX A;  3PCF M;  3PCN A;  3PCG A;  2BUX B;  4ILV A;  3MV6 M;  3MFL A;  3PCA M;  3PCL A;  4WHQ B;  1EOB A;  3LXV A;  1EO9 A;  3HGI A;  3PCB A;  3PCM M;  3PCC A;  2BUR B;  3HHX A;  1DMH A;  3O5U A;  3PCM A;  4WHR F;  3N9T A;  2XSR A;  3TH1 A;  4WHS A;  1YKM A;  3O6R A;  1TMX A;  3PCD A;  3PCN M;  2BUY A;  3PCG M;  4WHR B;  2XSU A;  2BUV A;  3MFL M;  3O6J A;  1YKK A;  3MV4 A;  3HJS A;  3PCL M;  1DLQ A;  1DLM A;  2BUU A;  4WHP B;  2BUQ A;  3LXV M;  3PCB M;  3I4Y A;  2BUT A;  2BUM A;  3PCC M;  2AZQ A;  1YKN A;  2BUZ A;  1EOA A;  1S9A A;  3T63 A;  2XSV A;  3T67 A; 
#chains in the Genus database with same CATH topology
 1EOB B;  4WHS D;  2BUW B;  3PCD M;  2BOY A;  3I4V A;  4WHQ A;  3PCJ A;  3MV4 M;  3O32 A;  2PCD M;  3MI1 A;  1DLT A;  1EO2 B;  5TD3 A;  1YKP B;  2BV0 B;  2PCD A;  1YKO B;  4ILT A;  1EOC B;  1YKL B;  3T63 M;  3T67 M;  4WHO A;  1YKK B;  2BUU B;  4WHR A;  3LKT A;  2BUQ B;  3MI5 M;  3PCJ M;  3PCK A;  3HHY A;  3I51 A;  4WHP A;  2BUX A;  2BUZ B;  3PCE M;  1EO9 B;  3MI1 M;  3MI5 A;  3PCE A;  3PCI M;  2BUR A;  3PCF A;  3PCI A;  4WHO D;  4WHS B;  1YKM B;  2BUW A;  3MV6 A;  3PCH M;  3PCA A;  3HKP A;  2BUY B;  3LKT M;  2BUV B;  3HJ8 A;  3PCH A;  3HJQ A;  3PCK M;  4WHP D;  1EO2 A;  1YKP A;  2BV0 A;  2BUT B;  2BUM B;  4WHO B;  1YKN B;  3LMX M;  1YKO A;  1EOC A;  1EOA B;  1YKL A;  3LMX A;  3PCF M;  3PCN A;  3PCG A;  2BUX B;  4ILV A;  3MV6 M;  3MFL A;  3PCA M;  3PCL A;  4WHQ B;  1EOB A;  3LXV A;  1EO9 A;  3HGI A;  3PCB A;  3PCM M;  3PCC A;  2BUR B;  3HHX A;  1DMH A;  3O5U A;  3PCM A;  4WHR F;  3N9T A;  2XSR A;  3TH1 A;  4WHS A;  1YKM A;  3O6R A;  1TMX A;  3PCD A;  3PCN M;  2BUY A;  3PCG M;  4WHR B;  2XSU A;  2BUV A;  3MFL M;  3O6J A;  1YKK A;  3MV4 A;  3HJS A;  3PCL M;  1DLQ A;  1DLM A;  2BUU A;  4WHP B;  2BUQ A;  3LXV M;  3PCB M;  3I4Y A;  2BUT A;  2BUM A;  3PCC M;  2AZQ A;  1YKN A;  2BUZ A;  1EOA A;  1S9A A;  3T63 A;  2XSV A;  3T67 A; 
#chains in the Genus database with same CATH homology
 1EOB B;  4WHS D;  2BUW B;  3PCD M;  2BOY A;  3I4V A;  4WHQ A;  3PCJ A;  3MV4 M;  3O32 A;  2PCD M;  3MI1 A;  1DLT A;  1EO2 B;  5TD3 A;  1YKP B;  2BV0 B;  2PCD A;  1YKO B;  4ILT A;  1EOC B;  1YKL B;  3T63 M;  3T67 M;  4WHO A;  1YKK B;  2BUU B;  4WHR A;  3LKT A;  2BUQ B;  3MI5 M;  3PCJ M;  3PCK A;  3HHY A;  3I51 A;  4WHP A;  2BUX A;  2BUZ B;  3PCE M;  1EO9 B;  3MI1 M;  3MI5 A;  3PCE A;  3PCI M;  2BUR A;  3PCF A;  3PCI A;  4WHO D;  4WHS B;  1YKM B;  2BUW A;  3MV6 A;  3PCH M;  3PCA A;  3HKP A;  2BUY B;  3LKT M;  2BUV B;  3HJ8 A;  3PCH A;  3HJQ A;  3PCK M;  4WHP D;  1EO2 A;  1YKP A;  2BV0 A;  2BUT B;  2BUM B;  4WHO B;  1YKN B;  3LMX M;  1YKO A;  1EOC A;  1EOA B;  1YKL A;  3LMX A;  3PCF M;  3PCN A;  3PCG A;  2BUX B;  4ILV A;  3MV6 M;  3MFL A;  3PCA M;  3PCL A;  4WHQ B;  1EOB A;  3LXV A;  1EO9 A;  3HGI A;  3PCB A;  3PCM M;  3PCC A;  2BUR B;  3HHX A;  1DMH A;  3O5U A;  3PCM A;  4WHR F;  3N9T A;  2XSR A;  3TH1 A;  4WHS A;  1YKM A;  3O6R A;  1TMX A;  3PCD A;  3PCN M;  2BUY A;  3PCG M;  4WHR B;  2XSU A;  2BUV A;  3MFL M;  3O6J A;  1YKK A;  3MV4 A;  3HJS A;  3PCL M;  1DLQ A;  1DLM A;  2BUU A;  4WHP B;  2BUQ A;  3LXV M;  3PCB M;  3I4Y A;  2BUT A;  2BUM A;  3PCC M;  2AZQ A;  1YKN A;  2BUZ A;  1EOA A;  1S9A A;  3T63 A;  2XSV A;  3T67 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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