3PCLA

Structure of protocatechuate 3,4-dioxygenase complexed with 2-hydroxyisonicotinic acid n-oxide and cyanide
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
200
structure length
200
Chain Sequence
PIELLPETPSQTAGPYVHIGLALEAAGNPTRDQEIWNRLAKPDAPGEHILLLGQVYDGNGHLVRDSFLEVWQADANGEYQDAYNLENAFNSFGRTATTFDAGEWTLHTVKPGVVNNAAGVPMAPHINISLFARGINIHLHTRLYFDDEAQANAKCPVLNLIEQPQRRETLIAKRCEVDGKTAYRFDIRIQGEGETVFFDF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dioxygenase
molecule keywords PROTOCATECHUATE 3,4-DIOXYGENASE
publication title Crystal structures of substrate and substrate analog complexes of protocatechuate 3,4-dioxygenase: endogenous Fe3+ ligand displacement in response to substrate binding.
pubmed doi rcsb
total genus 42
structure length 200
sequence length 200
chains with identical sequence B, C, D, E, F
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 1997-07-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00775 Dioxygenase_C Dioxygenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 3pclA00
1YKMA 2BUZB 3MFLM 1YKLA 3LMXA 3PCJM 2AZQA 1EO9B 3PCKA 1YKOA 3HJQA 2BUWB 3LKTA 3O6JA 3MI1M 2BURB 3MI1A 1YKKA 3MV6M 4ILVA 3PCDA 2BUQA 3MV4A 3MV6A 3PCLM 3N9TA 3PCAM 2BUYA 2XSRA 2BUMA 4WHSA 3LXVM 3PCBA 1EOAB 2BUXA 3PCFM 3PCEA 2BUVB 3T67A 1EO2A 2BUTA 2PCDA 1YKNB 3PCHM 3HGIA 4WHQA 4WHOA 2BV0A 3I4YA 3PCMM 5TD3A 1YKPB 3MFLA 3PCHA 3PCMA 3PCJA 3HKPA 1YKLB 1DLQA 3HJSA 4WHRF 4WHPA 3PCLA 3PCNM 3PCAA 4WHRB 1YKKB 3LXVA 2BUYB 3PCFA 4WHOD 3PCGM 1DMHA 3O32A 3HHXA 2BUXB 1S9AA 3O6RA 1EO2B 3TH1A 1EOBB 2BUTB 1YKMB 1EOCA 4WHOB 2BUUA 4ILTA 4WHQB 3PCCM 2BUZA 1YKNA 4WHPD 1DLTA 3MI5M 1YKOB 4WHSD 1EO9A 3PCBM 2BUWA 3O5UA 2XSVA 3PCNA 3LMXM 2BURA 2BUQB 1TMXA 4WHPB 3PCKM 2BUMB 4WHSB 3I4VA 3LKTM 2BOYA 3PCGA 1DLMA 3T63M 4WHRA 3PCDM 3T63A 3MV4M 1EOAA 3HJ8A 3I51A 2BUVA 2BV0B 3PCCA 1YKPA 2XSUA 3MI5A 3PCEM 3T67M 3PCIM 1EOCB 3HHYA 2BUUB 2PCDM 3PCIA 1EOBA
chains in the Genus database with same CATH superfamily
1YKMA 2BUZB 3MFLM 1YKLA 3LMXA 3PCJM 2AZQA 1EO9B 3PCKA 1YKOA 3HJQA 2BUWB 3LKTA 3O6JA 3MI1M 2BURB 3MI1A 1YKKA 3MV6M 4ILVA 3PCDA 2BUQA 3MV4A 3MV6A 3PCLM 3N9TA 3PCAM 2BUYA 2XSRA 2BUMA 4WHSA 3LXVM 3PCBA 1EOAB 2BUXA 3PCFM 3PCEA 2BUVB 3T67A 1EO2A 2BUTA 2PCDA 1YKNB 3PCHM 3HGIA 4WHQA 4WHOA 2BV0A 3I4YA 3PCMM 5TD3A 1YKPB 3MFLA 3PCHA 3PCMA 3PCJA 3HKPA 1YKLB 1DLQA 3HJSA 4WHRF 4WHPA 3PCLA 3PCNM 3PCAA 4WHRB 1YKKB 3LXVA 2BUYB 3PCFA 4WHOD 3PCGM 1DMHA 3O32A 3HHXA 2BUXB 1S9AA 3O6RA 1EO2B 3TH1A 1EOBB 2BUTB 1YKMB 1EOCA 4WHOB 2BUUA 4ILTA 4WHQB 3PCCM 2BUZA 1YKNA 4WHPD 1DLTA 3MI5M 1YKOB 4WHSD 1EO9A 3PCBM 2BUWA 3O5UA 2XSVA 3PCNA 3LMXM 2BURA 2BUQB 1TMXA 4WHPB 3PCKM 2BUMB 4WHSB 3I4VA 3LKTM 2BOYA 3PCGA 1DLMA 3T63M 4WHRA 3PCDM 3T63A 3MV4M 1EOAA 3HJ8A 3I51A 2BUVA 2BV0B 3PCCA 1YKPA 2XSUA 3MI5A 3PCEM 3T67M 3PCIM 1EOCB 3HHYA 2BUUB 2PCDM 3PCIA 1EOBA
chains in the Genus database with same CATH topology
1YKMA 2BUZB 3MFLM 1YKLA 3LMXA 3PCJM 2AZQA 1EO9B 3PCKA 1YKOA 3HJQA 2BUWB 3LKTA 3O6JA 3MI1M 2BURB 3MI1A 1YKKA 3MV6M 4ILVA 3PCDA 2BUQA 3MV4A 3MV6A 3PCLM 3N9TA 3PCAM 2BUYA 2XSRA 2BUMA 4WHSA 3LXVM 3PCBA 1EOAB 2BUXA 3PCFM 3PCEA 2BUVB 3T67A 1EO2A 2BUTA 2PCDA 1YKNB 3PCHM 3HGIA 4WHQA 4WHOA 2BV0A 3I4YA 3PCMM 5TD3A 1YKPB 3MFLA 3PCHA 3PCMA 3PCJA 3HKPA 1YKLB 1DLQA 3HJSA 4WHRF 4WHPA 3PCLA 3PCNM 3PCAA 4WHRB 1YKKB 3LXVA 2BUYB 3PCFA 4WHOD 3PCGM 1DMHA 3O32A 3HHXA 2BUXB 1S9AA 3O6RA 1EO2B 3TH1A 1EOBB 2BUTB 1YKMB 1EOCA 4WHOB 2BUUA 4ILTA 4WHQB 3PCCM 2BUZA 1YKNA 4WHPD 1DLTA 3MI5M 1YKOB 4WHSD 1EO9A 3PCBM 2BUWA 3O5UA 2XSVA 3PCNA 3LMXM 2BURA 2BUQB 1TMXA 4WHPB 3PCKM 2BUMB 4WHSB 3I4VA 3LKTM 2BOYA 3PCGA 1DLMA 3T63M 4WHRA 3PCDM 3T63A 3MV4M 1EOAA 3HJ8A 3I51A 2BUVA 2BV0B 3PCCA 1YKPA 2XSUA 3MI5A 3PCEM 3T67M 3PCIM 1EOCB 3HHYA 2BUUB 2PCDM 3PCIA 1EOBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YKM A;  2BUZ B;  3MFL M;  1YKL A;  3LMX A;  3PCJ M;  2AZQ A;  1EO9 B;  3PCK A;  1YKO A;  3HJQ A;  2BUW B;  3LKT A;  3O6J A;  3MI1 M;  2BUR B;  3MI1 A;  1YKK A;  3MV6 M;  4ILV A;  3PCD A;  2BUQ A;  3MV4 A;  3MV6 A;  3PCL M;  3N9T A;  3PCA M;  2BUY A;  2XSR A;  2BUM A;  4WHS A;  3LXV M;  3PCB A;  1EOA B;  2BUX A;  3PCF M;  3PCE A;  2BUV B;  3T67 A;  1EO2 A;  2BUT A;  2PCD A;  1YKN B;  3PCH M;  3HGI A;  4WHQ A;  4WHO A;  2BV0 A;  3I4Y A;  3PCM M;  5TD3 A;  1YKP B;  3MFL A;  3PCH A;  3PCM A;  3PCJ A;  3HKP A;  1YKL B;  1DLQ A;  3HJS A;  4WHR F;  4WHP A;  3PCL A;  3PCN M;  3PCA A;  4WHR B;  1YKK B;  3LXV A;  2BUY B;  3PCF A;  4WHO D;  3PCG M;  1DMH A;  3O32 A;  3HHX A;  2BUX B;  1S9A A;  3O6R A;  1EO2 B;  3TH1 A;  1EOB B;  2BUT B;  1YKM B;  1EOC A;  4WHO B;  2BUU A;  4ILT A;  4WHQ B;  3PCC M;  2BUZ A;  1YKN A;  4WHP D;  1DLT A;  3MI5 M;  1YKO B;  4WHS D;  1EO9 A;  3PCB M;  2BUW A;  3O5U A;  2XSV A;  3PCN A;  3LMX M;  2BUR A;  2BUQ B;  1TMX A;  4WHP B;  3PCK M;  2BUM B;  4WHS B;  3I4V A;  3LKT M;  2BOY A;  3PCG A;  1DLM A;  3T63 M;  4WHR A;  3PCD M;  3T63 A;  3MV4 M;  1EOA A;  3HJ8 A;  3I51 A;  2BUV A;  2BV0 B;  3PCC A;  1YKP A;  2XSU A;  3MI5 A;  3PCE M;  3T67 M;  3PCI M;  1EOC B;  3HHY A;  2BUU B;  2PCD M;  3PCI A;  1EOB A; 
#chains in the Genus database with same CATH topology
 1YKM A;  2BUZ B;  3MFL M;  1YKL A;  3LMX A;  3PCJ M;  2AZQ A;  1EO9 B;  3PCK A;  1YKO A;  3HJQ A;  2BUW B;  3LKT A;  3O6J A;  3MI1 M;  2BUR B;  3MI1 A;  1YKK A;  3MV6 M;  4ILV A;  3PCD A;  2BUQ A;  3MV4 A;  3MV6 A;  3PCL M;  3N9T A;  3PCA M;  2BUY A;  2XSR A;  2BUM A;  4WHS A;  3LXV M;  3PCB A;  1EOA B;  2BUX A;  3PCF M;  3PCE A;  2BUV B;  3T67 A;  1EO2 A;  2BUT A;  2PCD A;  1YKN B;  3PCH M;  3HGI A;  4WHQ A;  4WHO A;  2BV0 A;  3I4Y A;  3PCM M;  5TD3 A;  1YKP B;  3MFL A;  3PCH A;  3PCM A;  3PCJ A;  3HKP A;  1YKL B;  1DLQ A;  3HJS A;  4WHR F;  4WHP A;  3PCL A;  3PCN M;  3PCA A;  4WHR B;  1YKK B;  3LXV A;  2BUY B;  3PCF A;  4WHO D;  3PCG M;  1DMH A;  3O32 A;  3HHX A;  2BUX B;  1S9A A;  3O6R A;  1EO2 B;  3TH1 A;  1EOB B;  2BUT B;  1YKM B;  1EOC A;  4WHO B;  2BUU A;  4ILT A;  4WHQ B;  3PCC M;  2BUZ A;  1YKN A;  4WHP D;  1DLT A;  3MI5 M;  1YKO B;  4WHS D;  1EO9 A;  3PCB M;  2BUW A;  3O5U A;  2XSV A;  3PCN A;  3LMX M;  2BUR A;  2BUQ B;  1TMX A;  4WHP B;  3PCK M;  2BUM B;  4WHS B;  3I4V A;  3LKT M;  2BOY A;  3PCG A;  1DLM A;  3T63 M;  4WHR A;  3PCD M;  3T63 A;  3MV4 M;  1EOA A;  3HJ8 A;  3I51 A;  2BUV A;  2BV0 B;  3PCC A;  1YKP A;  2XSU A;  3MI5 A;  3PCE M;  3T67 M;  3PCI M;  1EOC B;  3HHY A;  2BUU B;  2PCD M;  3PCI A;  1EOB A; 
#chains in the Genus database with same CATH homology
 1YKM A;  2BUZ B;  3MFL M;  1YKL A;  3LMX A;  3PCJ M;  2AZQ A;  1EO9 B;  3PCK A;  1YKO A;  3HJQ A;  2BUW B;  3LKT A;  3O6J A;  3MI1 M;  2BUR B;  3MI1 A;  1YKK A;  3MV6 M;  4ILV A;  3PCD A;  2BUQ A;  3MV4 A;  3MV6 A;  3PCL M;  3N9T A;  3PCA M;  2BUY A;  2XSR A;  2BUM A;  4WHS A;  3LXV M;  3PCB A;  1EOA B;  2BUX A;  3PCF M;  3PCE A;  2BUV B;  3T67 A;  1EO2 A;  2BUT A;  2PCD A;  1YKN B;  3PCH M;  3HGI A;  4WHQ A;  4WHO A;  2BV0 A;  3I4Y A;  3PCM M;  5TD3 A;  1YKP B;  3MFL A;  3PCH A;  3PCM A;  3PCJ A;  3HKP A;  1YKL B;  1DLQ A;  3HJS A;  4WHR F;  4WHP A;  3PCL A;  3PCN M;  3PCA A;  4WHR B;  1YKK B;  3LXV A;  2BUY B;  3PCF A;  4WHO D;  3PCG M;  1DMH A;  3O32 A;  3HHX A;  2BUX B;  1S9A A;  3O6R A;  1EO2 B;  3TH1 A;  1EOB B;  2BUT B;  1YKM B;  1EOC A;  4WHO B;  2BUU A;  4ILT A;  4WHQ B;  3PCC M;  2BUZ A;  1YKN A;  4WHP D;  1DLT A;  3MI5 M;  1YKO B;  4WHS D;  1EO9 A;  3PCB M;  2BUW A;  3O5U A;  2XSV A;  3PCN A;  3LMX M;  2BUR A;  2BUQ B;  1TMX A;  4WHP B;  3PCK M;  2BUM B;  4WHS B;  3I4V A;  3LKT M;  2BOY A;  3PCG A;  1DLM A;  3T63 M;  4WHR A;  3PCD M;  3T63 A;  3MV4 M;  1EOA A;  3HJ8 A;  3I51 A;  2BUV A;  2BV0 B;  3PCC A;  1YKP A;  2XSU A;  3MI5 A;  3PCE M;  3T67 M;  3PCI M;  1EOC B;  3HHY A;  2BUU B;  2PCD M;  3PCI A;  1EOB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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