3PCMA

Structure of protocatechuate 3,4-dioxygenase complexed with 6-hydroxynicotinic acid n-oxide and cyanide
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
200
structure length
200
Chain Sequence
PIELLPETPSQTAGPYVHIGLALEAAGNPTRDQEIWNRLAKPDAPGEHILLLGQVYDGNGHLVRDSFLEVWQADANGEYQDAYNLENAFNSFGRTATTFDAGEWTLHTVKPGVVNNAAGVPMAPHINISLFARGINIHLHTRLYFDDEAQANAKCPVLNLIEQPQRRETLIAKRCEVDGKTAYRFDIRIQGEGETVFFDF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dioxygenase
molecule keywords PROTOCATECHUATE 3,4-DIOXYGENASE
publication title Crystal structures of substrate and substrate analog complexes of protocatechuate 3,4-dioxygenase: endogenous Fe3+ ligand displacement in response to substrate binding.
pubmed doi rcsb
total genus 42
structure length 200
sequence length 200
chains with identical sequence B, C, D, E, F
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 1997-07-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00775 Dioxygenase_C Dioxygenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 3pcmA00
3PCDA 3PCBM 2BUQA 2BUVA 3MI5M 1EOAA 3MV4A 3PCGM 2XSUA 1YKMA 3HHYA 3PCNM 3PCAA 3T63M 2BUZB 1YKNA 1DMHA 1EOCB 2BUXB 1EOBB 3LKTM 1TMXA 2BUTA 3MI1A 2BUYB 2BURB 3PCHM 1DLQA 3I51A 3PCLA 3PCIA 3PCEA 4WHSA 3LMXA 3O5UA 3PCJA 2PCDM 3PCMA 2BOYA 2BUWA 4WHPA 4WHRA 4WHQB 1YKPA 2BV0B 2BUMA 3PCKM 4WHRF 3PCDM 4WHOA 2AZQA 3PCFA 3I4VA 3MV4M 1YKOA 1YKKA 1YKLA 1S9AA 3O32A 3PCAM 3MFLA 2BUQB 2BUVB 1EO9A 1EOAB 2BUUA 1YKMB 3PCCA 3PCBA 3HKPA 3MI1M 1YKNB 3PCIM 3HJ8A 3PCNA 3PCJM 3PCMM 2BUTB 3O6JA 3T63A 3T67A 4WHSB 3MV6A 1EO2A 3HGIA 3I4YA 3LKTA 2BUWB 4WHPB 4WHRB 1YKPB 2XSVA 2PCDA 2BUMB 1DLTA 3LXVA 4WHOB 1DLMA 3PCKA 3O6RA 1YKOB 4WHPD 3MI5A 1YKKB 1YKLB 2BUZA 3PCCM 3PCGA 3PCLM 3PCEM 3LMXM 1EOCA 2BUXA 1EOBA 1EO9B 2BUYA 2BURA 2BUUB 4WHOD 5TD3A 3PCHA 3T67M 4WHQA 3MV6M 3TH1A 3HHXA 4ILTA 3PCFM 2BV0A 2XSRA 3N9TA 4ILVA 3HJSA 4WHSD 1EO2B 3HJQA 3MFLM 3LXVM
chains in the Genus database with same CATH superfamily
3PCDA 3PCBM 2BUQA 2BUVA 3MI5M 1EOAA 3MV4A 3PCGM 2XSUA 1YKMA 3HHYA 3PCNM 3PCAA 3T63M 2BUZB 1YKNA 1DMHA 1EOCB 2BUXB 1EOBB 3LKTM 1TMXA 2BUTA 3MI1A 2BUYB 2BURB 3PCHM 1DLQA 3I51A 3PCLA 3PCIA 3PCEA 4WHSA 3LMXA 3O5UA 3PCJA 2PCDM 3PCMA 2BOYA 2BUWA 4WHPA 4WHRA 4WHQB 1YKPA 2BV0B 2BUMA 3PCKM 4WHRF 3PCDM 4WHOA 2AZQA 3PCFA 3I4VA 3MV4M 1YKOA 1YKKA 1YKLA 1S9AA 3O32A 3PCAM 3MFLA 2BUQB 2BUVB 1EO9A 1EOAB 2BUUA 1YKMB 3PCCA 3PCBA 3HKPA 3MI1M 1YKNB 3PCIM 3HJ8A 3PCNA 3PCJM 3PCMM 2BUTB 3O6JA 3T63A 3T67A 4WHSB 3MV6A 1EO2A 3HGIA 3I4YA 3LKTA 2BUWB 4WHPB 4WHRB 1YKPB 2XSVA 2PCDA 2BUMB 1DLTA 3LXVA 4WHOB 1DLMA 3PCKA 3O6RA 1YKOB 4WHPD 3MI5A 1YKKB 1YKLB 2BUZA 3PCCM 3PCGA 3PCLM 3PCEM 3LMXM 1EOCA 2BUXA 1EOBA 1EO9B 2BUYA 2BURA 2BUUB 4WHOD 5TD3A 3PCHA 3T67M 4WHQA 3MV6M 3TH1A 3HHXA 4ILTA 3PCFM 2BV0A 2XSRA 3N9TA 4ILVA 3HJSA 4WHSD 1EO2B 3HJQA 3MFLM 3LXVM
chains in the Genus database with same CATH topology
3PCDA 3PCBM 2BUQA 2BUVA 3MI5M 1EOAA 3MV4A 3PCGM 2XSUA 1YKMA 3HHYA 3PCNM 3PCAA 3T63M 2BUZB 1YKNA 1DMHA 1EOCB 2BUXB 1EOBB 3LKTM 1TMXA 2BUTA 3MI1A 2BUYB 2BURB 3PCHM 1DLQA 3I51A 3PCLA 3PCIA 3PCEA 4WHSA 3LMXA 3O5UA 3PCJA 2PCDM 3PCMA 2BOYA 2BUWA 4WHPA 4WHRA 4WHQB 1YKPA 2BV0B 2BUMA 3PCKM 4WHRF 3PCDM 4WHOA 2AZQA 3PCFA 3I4VA 3MV4M 1YKOA 1YKKA 1YKLA 1S9AA 3O32A 3PCAM 3MFLA 2BUQB 2BUVB 1EO9A 1EOAB 2BUUA 1YKMB 3PCCA 3PCBA 3HKPA 3MI1M 1YKNB 3PCIM 3HJ8A 3PCNA 3PCJM 3PCMM 2BUTB 3O6JA 3T63A 3T67A 4WHSB 3MV6A 1EO2A 3HGIA 3I4YA 3LKTA 2BUWB 4WHPB 4WHRB 1YKPB 2XSVA 2PCDA 2BUMB 1DLTA 3LXVA 4WHOB 1DLMA 3PCKA 3O6RA 1YKOB 4WHPD 3MI5A 1YKKB 1YKLB 2BUZA 3PCCM 3PCGA 3PCLM 3PCEM 3LMXM 1EOCA 2BUXA 1EOBA 1EO9B 2BUYA 2BURA 2BUUB 4WHOD 5TD3A 3PCHA 3T67M 4WHQA 3MV6M 3TH1A 3HHXA 4ILTA 3PCFM 2BV0A 2XSRA 3N9TA 4ILVA 3HJSA 4WHSD 1EO2B 3HJQA 3MFLM 3LXVM
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PCD A;  3PCB M;  2BUQ A;  2BUV A;  3MI5 M;  1EOA A;  3MV4 A;  3PCG M;  2XSU A;  1YKM A;  3HHY A;  3PCN M;  3PCA A;  3T63 M;  2BUZ B;  1YKN A;  1DMH A;  1EOC B;  2BUX B;  1EOB B;  3LKT M;  1TMX A;  2BUT A;  3MI1 A;  2BUY B;  2BUR B;  3PCH M;  1DLQ A;  3I51 A;  3PCL A;  3PCI A;  3PCE A;  4WHS A;  3LMX A;  3O5U A;  3PCJ A;  2PCD M;  3PCM A;  2BOY A;  2BUW A;  4WHP A;  4WHR A;  4WHQ B;  1YKP A;  2BV0 B;  2BUM A;  3PCK M;  4WHR F;  3PCD M;  4WHO A;  2AZQ A;  3PCF A;  3I4V A;  3MV4 M;  1YKO A;  1YKK A;  1YKL A;  1S9A A;  3O32 A;  3PCA M;  3MFL A;  2BUQ B;  2BUV B;  1EO9 A;  1EOA B;  2BUU A;  1YKM B;  3PCC A;  3PCB A;  3HKP A;  3MI1 M;  1YKN B;  3PCI M;  3HJ8 A;  3PCN A;  3PCJ M;  3PCM M;  2BUT B;  3O6J A;  3T63 A;  3T67 A;  4WHS B;  3MV6 A;  1EO2 A;  3HGI A;  3I4Y A;  3LKT A;  2BUW B;  4WHP B;  4WHR B;  1YKP B;  2XSV A;  2PCD A;  2BUM B;  1DLT A;  3LXV A;  4WHO B;  1DLM A;  3PCK A;  3O6R A;  1YKO B;  4WHP D;  3MI5 A;  1YKK B;  1YKL B;  2BUZ A;  3PCC M;  3PCG A;  3PCL M;  3PCE M;  3LMX M;  1EOC A;  2BUX A;  1EOB A;  1EO9 B;  2BUY A;  2BUR A;  2BUU B;  4WHO D;  5TD3 A;  3PCH A;  3T67 M;  4WHQ A;  3MV6 M;  3TH1 A;  3HHX A;  4ILT A;  3PCF M;  2BV0 A;  2XSR A;  3N9T A;  4ILV A;  3HJS A;  4WHS D;  1EO2 B;  3HJQ A;  3MFL M;  3LXV M; 
#chains in the Genus database with same CATH topology
 3PCD A;  3PCB M;  2BUQ A;  2BUV A;  3MI5 M;  1EOA A;  3MV4 A;  3PCG M;  2XSU A;  1YKM A;  3HHY A;  3PCN M;  3PCA A;  3T63 M;  2BUZ B;  1YKN A;  1DMH A;  1EOC B;  2BUX B;  1EOB B;  3LKT M;  1TMX A;  2BUT A;  3MI1 A;  2BUY B;  2BUR B;  3PCH M;  1DLQ A;  3I51 A;  3PCL A;  3PCI A;  3PCE A;  4WHS A;  3LMX A;  3O5U A;  3PCJ A;  2PCD M;  3PCM A;  2BOY A;  2BUW A;  4WHP A;  4WHR A;  4WHQ B;  1YKP A;  2BV0 B;  2BUM A;  3PCK M;  4WHR F;  3PCD M;  4WHO A;  2AZQ A;  3PCF A;  3I4V A;  3MV4 M;  1YKO A;  1YKK A;  1YKL A;  1S9A A;  3O32 A;  3PCA M;  3MFL A;  2BUQ B;  2BUV B;  1EO9 A;  1EOA B;  2BUU A;  1YKM B;  3PCC A;  3PCB A;  3HKP A;  3MI1 M;  1YKN B;  3PCI M;  3HJ8 A;  3PCN A;  3PCJ M;  3PCM M;  2BUT B;  3O6J A;  3T63 A;  3T67 A;  4WHS B;  3MV6 A;  1EO2 A;  3HGI A;  3I4Y A;  3LKT A;  2BUW B;  4WHP B;  4WHR B;  1YKP B;  2XSV A;  2PCD A;  2BUM B;  1DLT A;  3LXV A;  4WHO B;  1DLM A;  3PCK A;  3O6R A;  1YKO B;  4WHP D;  3MI5 A;  1YKK B;  1YKL B;  2BUZ A;  3PCC M;  3PCG A;  3PCL M;  3PCE M;  3LMX M;  1EOC A;  2BUX A;  1EOB A;  1EO9 B;  2BUY A;  2BUR A;  2BUU B;  4WHO D;  5TD3 A;  3PCH A;  3T67 M;  4WHQ A;  3MV6 M;  3TH1 A;  3HHX A;  4ILT A;  3PCF M;  2BV0 A;  2XSR A;  3N9T A;  4ILV A;  3HJS A;  4WHS D;  1EO2 B;  3HJQ A;  3MFL M;  3LXV M; 
#chains in the Genus database with same CATH homology
 3PCD A;  3PCB M;  2BUQ A;  2BUV A;  3MI5 M;  1EOA A;  3MV4 A;  3PCG M;  2XSU A;  1YKM A;  3HHY A;  3PCN M;  3PCA A;  3T63 M;  2BUZ B;  1YKN A;  1DMH A;  1EOC B;  2BUX B;  1EOB B;  3LKT M;  1TMX A;  2BUT A;  3MI1 A;  2BUY B;  2BUR B;  3PCH M;  1DLQ A;  3I51 A;  3PCL A;  3PCI A;  3PCE A;  4WHS A;  3LMX A;  3O5U A;  3PCJ A;  2PCD M;  3PCM A;  2BOY A;  2BUW A;  4WHP A;  4WHR A;  4WHQ B;  1YKP A;  2BV0 B;  2BUM A;  3PCK M;  4WHR F;  3PCD M;  4WHO A;  2AZQ A;  3PCF A;  3I4V A;  3MV4 M;  1YKO A;  1YKK A;  1YKL A;  1S9A A;  3O32 A;  3PCA M;  3MFL A;  2BUQ B;  2BUV B;  1EO9 A;  1EOA B;  2BUU A;  1YKM B;  3PCC A;  3PCB A;  3HKP A;  3MI1 M;  1YKN B;  3PCI M;  3HJ8 A;  3PCN A;  3PCJ M;  3PCM M;  2BUT B;  3O6J A;  3T63 A;  3T67 A;  4WHS B;  3MV6 A;  1EO2 A;  3HGI A;  3I4Y A;  3LKT A;  2BUW B;  4WHP B;  4WHR B;  1YKP B;  2XSV A;  2PCD A;  2BUM B;  1DLT A;  3LXV A;  4WHO B;  1DLM A;  3PCK A;  3O6R A;  1YKO B;  4WHP D;  3MI5 A;  1YKK B;  1YKL B;  2BUZ A;  3PCC M;  3PCG A;  3PCL M;  3PCE M;  3LMX M;  1EOC A;  2BUX A;  1EOB A;  1EO9 B;  2BUY A;  2BUR A;  2BUU B;  4WHO D;  5TD3 A;  3PCH A;  3T67 M;  4WHQ A;  3MV6 M;  3TH1 A;  3HHX A;  4ILT A;  3PCF M;  2BV0 A;  2XSR A;  3N9T A;  4ILV A;  3HJS A;  4WHS D;  1EO2 B;  3HJQ A;  3MFL M;  3LXV M; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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