3PIOW

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit
Total Genus 11
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
55
structure length
55
Chain Sequence
MKIKLVRSVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLEVQE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Crystal structure of the synergistic antibiotic pair, lankamycin and lankacidin, in complex with the large ribosomal subunit.
pubmed doi rcsb
molecule tags Ribosome/antibiotic
molecule keywords RIBOSOMAL 23S RNA
total genus 11
structure length 55
sequence length 55
ec nomenclature
pdb deposition date 2010-11-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 3pioW00
1QVFV 5DM7W 3CCSW 5JVGW 5GADa 1Q81X 1VQ6W 2QA4W 1YJNW 1YJWW 1KQSV 3OW2V 3CXCV 1QVGV 3I55W 3PIPW 3CC4W 3CCVW 1YI2W 3CPWV 3CCUW 1JJ2V 1YITW 1KD1X 3G71W 1S72W 1Q86X 1Q82X 4WCEW 5HL7W 3G4SW 1M90X 3CMEW 3CF5W 2ZJPW 3CMAW 1KC8X 5JVHW 1Q7YX 1K73X 3PIOW 4WFBW 1VQ8W 4IO9W 4UY8Z 1YIJW 1K9MX 1YJ9W 3CCMW 1VQ9W 3CC7W 4WF9W 4U67W 1VQPW 3I56W 3CCQW 5DM6W 1K8AX 3CC2W 1BXYA 1YHQW 1M1KX 1VQLW 1VQKW 3CCJW 1VQ4W 2OTLW 1VQ5W 2ZJRW 3CD6W 5GAEa 1VQOW 4WFNW 4WFAW 2QEXW 2OTJW 1VQMW 4IOAW 1W2BV 1VQNW 3CCEW 3G6EW 5GAHa 3CCLW 1N8RX 3DLLW 2ZJQW 3J7ZZ 3CCRW 5GAGa 1NJIX 1VQ7W 4IOCW
chains in the Genus database with same CATH superfamily
1R6QC 1QVFV 5DM7W 1RQVA 3O2BA 3CCSW 3G3PA 4BL2A 3O1FB 5JVGW 5GADa 1Q81X 1VQ6W 2QA4W 1YJNW 1YJWW 1KQSV 3OW2V 3W7TA 3CXCV 1R6OC 2W9RA 1QVGV 3I55W 5M19A 3PIPW 3CC4W 3CCVW 1YI2W 3CPWV 3CCUW 1JJ2V 1YITW 1KD1X 3G71W 1S72W 3G19A 1Q86X 1Q82X 4WCEW 5HL7W 1MWRA 3G4SW 3W7SA 3GW1A 3ZG0A 3CMEW 1M90X 3CF5W 1MWTA 4YKAA 2ZJPW 3W7XA 2WA8A 3CMAW 3ZFZA 5M18A 1KC8X 5JVHW 1Q7YX 1MWSA 1RQUA 1K73X 3PIOW 5CA3A 4WFBW 1VQ8W 4IO9W 4UY8Z 1YIJW 1K9MX 1YJ9W 3DNJA 3ZG5A 3O1FA 3CCMW 1VQ9W 3GQ1A 1RQSA 3CC7W 4YJXA 1MBUC 4WF9W 4U67W 1MWUA 3W7UA 1VQPW 3I56W 4CPKA 3CCQW 5DM6W 1K8AX 1CTFA 3CC2W 2WA9A 5M1AA 3O2HA 4YJMA 1DD3A 1BXYA 1YHQW 1M1KX 1VQLW 1MG9A 1VQKW 1VQ4W 2OTLW 4BL3A 1VQ5W 2ZJRW 1DD4A 1MBXC 3CD6W 1LZWA 3D3IA 5GAEa 4WFNW 1VQOW 4DKIA 4WFAW 3W7WA 2QEXW 2OTJW 1VQMW 4IOAW 1W2BV 1VQNW 3CCEW 3G6EW 1VQQA 5GAHa 3CCLW 3GQ0A 1MBVB 1N8RX 5GW7A 3G1BA 3DLLW 2ZJQW 3J7ZZ 3CCRW 3O2OA 5GAGa 4CJNA 4IOCW 1NJIX 1VQ7W 3CCJW
chains in the Genus database with same CATH topology
1QVFV 5DM7W 3CCSW 5JVGW 5GADa 1Q81X 1VQ6W 2QA4W 1YJNW 1YJWW 1KQSV 3OW2V 3CXCV 1QVGV 3I55W 3PIPW 3CC4W 3CCVW 1YI2W 3CPWV 3CCUW 1JJ2V 1YITW 1KD1X 3G71W 1S72W 1Q86X 1Q82X 4WCEW 5HL7W 3G4SW 1M90X 3CMEW 3CF5W 2ZJPW 3CMAW 1KC8X 5JVHW 1Q7YX 1K73X 3PIOW 4WFBW 1VQ8W 4IO9W 4UY8Z 1YIJW 1K9MX 1YJ9W 3CCMW 1VQ9W 3CC7W 4WF9W 4U67W 1VQPW 3I56W 3CCQW 5DM6W 1K8AX 3CC2W 1BXYA 1YHQW 1M1KX 1VQLW 1VQKW 3CCJW 1VQ4W 2OTLW 1VQ5W 2ZJRW 3CD6W 5GAEa 1VQOW 4WFNW 4WFAW 2QEXW 2OTJW 1VQMW 4IOAW 1W2BV 1VQNW 3CCEW 3G6EW 5GAHa 3CCLW 1N8RX 3DLLW 2ZJQW 3J7ZZ 3CCRW 5GAGa 1NJIX 1VQ7W 4IOCW
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QVF V;  5DM7 W;  3CCS W;  5JVG W;  5GAD a;  1Q81 X;  1VQ6 W;  2QA4 W;  1YJN W;  1YJW W;  1KQS V;  3OW2 V;  3CXC V;  1QVG V;  3I55 W;  3PIP W;  3CC4 W;  3CCV W;  1YI2 W;  3CPW V;  3CCU W;  1JJ2 V;  1YIT W;  1KD1 X;  3G71 W;  1S72 W;  1Q86 X;  1Q82 X;  4WCE W;  5HL7 W;  3G4S W;  1M90 X;  3CME W;  3CF5 W;  2ZJP W;  3CMA W;  1KC8 X;  5JVH W;  1Q7Y X;  1K73 X;  3PIO W;  4WFB W;  1VQ8 W;  4IO9 W;  4UY8 Z;  1YIJ W;  1K9M X;  1YJ9 W;  3CCM W;  1VQ9 W;  3CC7 W;  4WF9 W;  4U67 W;  1VQP W;  3I56 W;  3CCQ W;  5DM6 W;  1K8A X;  3CC2 W;  1BXY A;  1YHQ W;  1M1K X;  1VQL W;  1VQK W;  3CCJ W;  1VQ4 W;  2OTL W;  1VQ5 W;  2ZJR W;  3CD6 W;  5GAE a;  1VQO W;  4WFN W;  4WFA W;  2QEX W;  2OTJ W;  1VQM W;  4IOA W;  1W2B V;  1VQN W;  3CCE W;  3G6E W;  5GAH a;  3CCL W;  1N8R X;  3DLL W;  2ZJQ W;  3J7Z Z;  3CCR W;  5GAG a;  1NJI X;  1VQ7 W;  4IOC W; 
#chains in the Genus database with same CATH topology
 1R6Q C;  1QVF V;  5DM7 W;  1RQV A;  3O2B A;  3CCS W;  3G3P A;  4BL2 A;  3O1F B;  5JVG W;  5GAD a;  1Q81 X;  1VQ6 W;  2QA4 W;  1YJN W;  1YJW W;  1KQS V;  3OW2 V;  3W7T A;  3CXC V;  1R6O C;  2W9R A;  1QVG V;  3I55 W;  5M19 A;  3PIP W;  3CC4 W;  3CCV W;  1YI2 W;  3CPW V;  3CCU W;  1JJ2 V;  1YIT W;  1KD1 X;  3G71 W;  1S72 W;  3G19 A;  1Q86 X;  1Q82 X;  4WCE W;  5HL7 W;  1MWR A;  3G4S W;  3W7S A;  3GW1 A;  3ZG0 A;  3CME W;  1M90 X;  3CF5 W;  1MWT A;  4YKA A;  2ZJP W;  3W7X A;  2WA8 A;  3CMA W;  3ZFZ A;  5M18 A;  1KC8 X;  5JVH W;  1Q7Y X;  1MWS A;  1RQU A;  1K73 X;  3PIO W;  5CA3 A;  4WFB W;  1VQ8 W;  4IO9 W;  4UY8 Z;  1YIJ W;  1K9M X;  1YJ9 W;  3DNJ A;  3ZG5 A;  3O1F A;  3CCM W;  1VQ9 W;  3GQ1 A;  1RQS A;  3CC7 W;  4YJX A;  1MBU C;  4WF9 W;  4U67 W;  1MWU A;  3W7U A;  1VQP W;  3I56 W;  4CPK A;  3CCQ W;  5DM6 W;  1K8A X;  1CTF A;  3CC2 W;  2WA9 A;  5M1A A;  3O2H A;  4YJM A;  1DD3 A;  1BXY A;  1YHQ W;  1M1K X;  1VQL W;  1MG9 A;  1VQK W;  1VQ4 W;  2OTL W;  4BL3 A;  1VQ5 W;  2ZJR W;  1DD4 A;  1MBX C;  3CD6 W;  1LZW A;  3D3I A;  5GAE a;  4WFN W;  1VQO W;  4DKI A;  4WFA W;  3W7W A;  2QEX W;  2OTJ W;  1VQM W;  4IOA W;  1W2B V;  1VQN W;  3CCE W;  3G6E W;  1VQQ A;  5GAH a;  3CCL W;  3GQ0 A;  1MBV B;  1N8R X;  5GW7 A;  3G1B A;  3DLL W;  2ZJQ W;  3J7Z Z;  3CCR W;  3O2O A;  5GAG a;  4CJN A;  4IOC W;  1NJI X;  1VQ7 W;  3CCJ W; 
#chains in the Genus database with same CATH homology
 1QVF V;  5DM7 W;  3CCS W;  5JVG W;  5GAD a;  1Q81 X;  1VQ6 W;  2QA4 W;  1YJN W;  1YJW W;  1KQS V;  3OW2 V;  3CXC V;  1QVG V;  3I55 W;  3PIP W;  3CC4 W;  3CCV W;  1YI2 W;  3CPW V;  3CCU W;  1JJ2 V;  1YIT W;  1KD1 X;  3G71 W;  1S72 W;  1Q86 X;  1Q82 X;  4WCE W;  5HL7 W;  3G4S W;  1M90 X;  3CME W;  3CF5 W;  2ZJP W;  3CMA W;  1KC8 X;  5JVH W;  1Q7Y X;  1K73 X;  3PIO W;  4WFB W;  1VQ8 W;  4IO9 W;  4UY8 Z;  1YIJ W;  1K9M X;  1YJ9 W;  3CCM W;  1VQ9 W;  3CC7 W;  4WF9 W;  4U67 W;  1VQP W;  3I56 W;  3CCQ W;  5DM6 W;  1K8A X;  3CC2 W;  1BXY A;  1YHQ W;  1M1K X;  1VQL W;  1VQK W;  3CCJ W;  1VQ4 W;  2OTL W;  1VQ5 W;  2ZJR W;  3CD6 W;  5GAE a;  1VQO W;  4WFN W;  4WFA W;  2QEX W;  2OTJ W;  1VQM W;  4IOA W;  1W2B V;  1VQN W;  3CCE W;  3G6E W;  5GAH a;  3CCL W;  1N8R X;  3DLL W;  2ZJQ W;  3J7Z Z;  3CCR W;  5GAG a;  1NJI X;  1VQ7 W;  4IOC W; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...