3PIPK

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
113
structure length
113
Chain Sequence
HGKAGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVMDEVAPKYAERPGGYTRILRVGTRRGDGVTMALIEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/antibiotic
molecule keywords RIBOSOMAL 23S RNA
publication title Crystal structure of the synergistic antibiotic pair, lankamycin and lankacidin, in complex with the large ribosomal subunit.
pubmed doi rcsb
total genus 26
structure length 113
sequence length 113
ec nomenclature
pdb deposition date 2010-11-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
K PF01196 Ribosomal_L17 Ribosomal protein L17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1030.10 Alpha Beta Alpha-Beta Complex 50s Ribosomal Protein L17; Chain: A, Ribosomal protein L17 3pipK00
5H1SP 3PIOK 5DM6K 2CQMA 5GAHO 2ZJQK 3DLLK 4WFNK 5GADO 4IOAK 3CF5K 4WFAK 4UY8N 5DM7K 5HL7K 5JVHK 3PIPK 5GAEO 4WFBK 5MLCP 3J7ZN 4WF9K 4WCEK 4IOCK 5GAGO 1GD8A 4U67K 2ZJPK 5JVGK 4IO9K 2ZJRK
chains in the Genus database with same CATH superfamily
5H1SP 3PIOK 5DM6K 2CQMA 5GAHO 2ZJQK 3DLLK 4WFNK 5GADO 4IOAK 3CF5K 4WFAK 4UY8N 5DM7K 5HL7K 5JVHK 3PIPK 5GAEO 4WFBK 5MLCP 3J7ZN 4WF9K 4WCEK 4IOCK 5GAGO 1GD8A 4U67K 2ZJPK 5JVGK 4IO9K 2ZJRK
chains in the Genus database with same CATH topology
5H1SP 3PIOK 5DM6K 2CQMA 5GAHO 2ZJQK 3DLLK 4WFNK 5GADO 4IOAK 3CF5K 4WFAK 4UY8N 5DM7K 5HL7K 5JVHK 3PIPK 5GAEO 4WFBK 5MLCP 3J7ZN 4WF9K 4WCEK 4IOCK 5GAGO 1GD8A 4U67K 2ZJPK 5JVGK 4IO9K 2ZJRK
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5H1S P;  3PIO K;  5DM6 K;  2CQM A;  5GAH O;  2ZJQ K;  3DLL K;  4WFN K;  5GAD O;  4IOA K;  3CF5 K;  4WFA K;  4UY8 N;  5DM7 K;  5HL7 K;  5JVH K;  3PIP K;  5GAE O;  4WFB K;  5MLC P;  3J7Z N;  4WF9 K;  4WCE K;  4IOC K;  5GAG O;  1GD8 A;  4U67 K;  2ZJP K;  5JVG K;  4IO9 K;  2ZJR K; 
#chains in the Genus database with same CATH topology
 5H1S P;  3PIO K;  5DM6 K;  2CQM A;  5GAH O;  2ZJQ K;  3DLL K;  4WFN K;  5GAD O;  4IOA K;  3CF5 K;  4WFA K;  4UY8 N;  5DM7 K;  5HL7 K;  5JVH K;  3PIP K;  5GAE O;  4WFB K;  5MLC P;  3J7Z N;  4WF9 K;  4WCE K;  4IOC K;  5GAG O;  1GD8 A;  4U67 K;  2ZJP K;  5JVG K;  4IO9 K;  2ZJR K; 
#chains in the Genus database with same CATH homology
 5H1S P;  3PIO K;  5DM6 K;  2CQM A;  5GAH O;  2ZJQ K;  3DLL K;  4WFN K;  5GAD O;  4IOA K;  3CF5 K;  4WFA K;  4UY8 N;  5DM7 K;  5HL7 K;  5JVH K;  3PIP K;  5GAE O;  4WFB K;  5MLC P;  3J7Z N;  4WF9 K;  4WCE K;  4IOC K;  5GAG O;  1GD8 A;  4U67 K;  2ZJP K;  5JVG K;  4IO9 K;  2ZJR K; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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