3PKNA

Crystal structure of mlle domain of poly(a) binding protein in complex with pam2 motif of la-related protein 4 (larp4)
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
79
structure length
79
Chain Sequence
PLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Protein binding
molecule keywords Polyadenylate-binding protein 1
publication title La-Related Protein 4 Binds Poly(A), Interacts with the Poly(A)-Binding Protein MLLE Domain via a Variant PAM2w Motif, and Can Promote mRNA Stability.
pubmed doi rcsb
source organism Homo sapiens
total genus 27
structure length 79
sequence length 79
ec nomenclature
pdb deposition date 2010-11-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00658 PABP Poly-adenylate binding protein, unique domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1900.10 Mainly Alpha Orthogonal Bundle c-terminal domain of poly(a) binding protein c-terminal domain of poly(a) binding protein 3pknA01
3KUSA 3PKNA 1I2TA 1IFWA 1JH4A 2X04A 4IVEA 2RQHB 1JGNA 3KUJA 2HH6A 3KUIA 3KURA 1NMRA 2O4TA 2RQGB 3KTPA 2O3LA 3KUTA 3NTWA 3PTHA 3KTRA 2DYDA 1G9LA
chains in the Genus database with same CATH superfamily
2LKLA 3KUSA 3PKNA 1I2TA 1IFWA 4KXFB 1JH4A 2X04A 1GYZA 4IVEA 2RQHB 3M92A 1JGNA 2GHJA 3KUJA 2HH6A 3KUIA 3KURA 1NMRA 2O4TA 2RQGB 3KTPA 2O3LA 3KUTA 3NTWA 3PTHA 3KTRA 2DYDA 1G9LA
chains in the Genus database with same CATH topology
2LKLA 3KUSA 3PKNA 1I2TA 1IFWA 4KXFB 1JH4A 2X04A 4IVEA 2RQHB 3M92A 1JGNA 3KUJA 2HH6A 3KUIA 3KURA 1NMRA 2O4TA 2RQGB 3KTPA 2O3LA 3KUTA 3NTWA 3PTHA 3KTRA 2DYDA 1G9LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KUS A;  3PKN A;  1I2T A;  1IFW A;  1JH4 A;  2X04 A;  4IVE A;  2RQH B;  1JGN A;  3KUJ A;  2HH6 A;  3KUI A;  3KUR A;  1NMR A;  2O4T A;  2RQG B;  3KTP A;  2O3L A;  3KUT A;  3NTW A;  3PTH A;  3KTR A;  2DYD A;  1G9L A; 
#chains in the Genus database with same CATH topology
 2LKL A;  3KUS A;  3PKN A;  1I2T A;  1IFW A;  4KXF B;  1JH4 A;  2X04 A;  1GYZ A;  4IVE A;  2RQH B;  3M92 A;  1JGN A;  2GHJ A;  3KUJ A;  2HH6 A;  3KUI A;  3KUR A;  1NMR A;  2O4T A;  2RQG B;  3KTP A;  2O3L A;  3KUT A;  3NTW A;  3PTH A;  3KTR A;  2DYD A;  1G9L A; 
#chains in the Genus database with same CATH homology
 2LKL A;  3KUS A;  3PKN A;  1I2T A;  1IFW A;  4KXF B;  1JH4 A;  2X04 A;  4IVE A;  2RQH B;  3M92 A;  1JGN A;  3KUJ A;  2HH6 A;  3KUI A;  3KUR A;  1NMR A;  2O4T A;  2RQG B;  3KTP A;  2O3L A;  3KUT A;  3NTW A;  3PTH A;  3KTR A;  2DYD A;  1G9L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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