3PLTA

Crystal structure of lsp1 from saccharomyces cerevisiae
Total Genus 90
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
214
structure length
214
Chain Sequence
GPELARKLSQLVKTEKGVLRAMEVVASERREAAKQLSLWGADNDDDVSDVTDKLGVLIYELGELQDQFIDKYDQYRVTLKSIRNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAEAQLSNITREKLKAAYSYMFDSLRELSEKFALIAGYGKALLELLDDSPVTPGEARPAYDGYEASRQIIMDAESALESWTLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Sphingolipid long chain base-responsive protein LSP1
publication title Eisosome-driven plasma membrane organization is mediated by BAR domains.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 90
structure length 214
sequence length 214
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2010-11-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 3pltA00
4WPCA 1I4LA 4DCNC 1WDZA 1X03A 2C08A 3ABHA 2EFKA 3HAIA 2Q12A 3M3WA 2Z0VA 2RAJA 4WPEA 2RAKA 4NQIA 2D1LA 2X3WA 4H8SA 4AKVA 3OK8A 1Y2OA 1I4TA 3PLTA 3I2WA 3SOGA 2X3VA 2YKTA 3HAJA 2Q13A 3G9GA 4BNEA 2D4CA 3LLLA 3QE6A 4FZSA 5C5BB 3Q0KA 2Z0OA 1X04A 1I49A 3QNIA 3HAHA 1ZWWA 4AVMA 4NSWA 3SYVA 4DYLA 3QWEA 2RAIA 2Z0NA 2X3XA 4ATMA 1URUA 1I4DA 2V0OA 2ELBA 3ACOA 3DYTA 3Q84A 5C5BA 2FICA 4I1QA 3CAZA 2EFLA
chains in the Genus database with same CATH superfamily
4WPCA 3DDGA 3GI7A 2YIAA 3T47A 3BVUA 1GN9A 3F7WA 4AKVA 1DKYA 1E9VA 2X3VA 2FYVA 2YL9A 2F1AA 1E2UA 4AZGA 4BNEA 5E84A 4FZSA 4F00A 1HXKA 3O3MB 3L3PA 4ATMA 2V0OA 1SUFA 1OA0A 1TQUA 1OA1A 1I4LA 3BVWA 3C7NA 2EFKA 3D4YA 2OW6A 1O7DC 1DKZA 1GNLA 3ER8C 4H8SA 3EJUA 3DDFA 2QFFA 3T48A 3EJPA 1TQSA 3KAWA 3LLLA 3BUBA 4G6QA 1ZWWA 3ZEDA 4JWDA 2OBLA 1DKXA 1QX1A 3QNJA 4E81A 4EZXA 2ND0A 3BUQA 1WDZA 4H6IA 1JQKA 2RAKA 4AZBA 3ER9B 2Q13A 2ZXQA 3B53X 4F01A 3QWEA 4JWEA 4FZOA 3UITA 2YLLA 3RPMA 2X3WA 4EZYA 1I4TA 3HAJA 3A98A 1SU7A 3CVRA 2LM0A 5TKYA 4KIKA 4H6HA 4JN4A 1URUA 4JWIA 1LQ7A 3HAIA 3T49A 3I04A 4EZSA 3M3WA 3BVVA 3OK8A 3SOGA 2YKTA 2F1BA 3DX2A 1X04A 4R5JA 2OBMA 2YL5A 4UDXX 4IWPA 2WINM 3RV0A 2ALWA 3KDRA 4IM2A 2EWFA 4EZWA 2KHOA 4E3CA 4R5LA 2RAJA 2EX3B 1R5EA 3DX1A 3QE6A 3HAHA 4IM3A 4AVMA 2WYHA 4NPHA 3BVXA 3DPQA 4IW0A 2F7QA 3DX4A 1TQVA 4DCNC 1OAOA 3ABHA 2WYIA 4R5KA 4FM3A 2GA9D 1HTYA 1Y2OA 3B52X 1W9MA 4EZNA 4EZVA 4HR1A 3DPOA 2LXYA 3SYVA 4FZPA 3O3OB 4I1QA 3OHXM 3D52A 3VEAA 3CZSA 2Z0VA 4EZPA 3T46A 3LMFA 1E1DA 1GNTA 4AZCA 3D51A 4IWQA 4IM0A 2Z0NA 3D2EA 2O0I1 3DYTA 3ACOA 1UPXA 1TQWA 2F7OA 4EZZA 4JLCA 4JNEA 2MI7A 3DX3A 1HWWA 3D2FA 2YIBA 4JL9A 2QKWA 3I01A 2JNKA 3BUIA 3CV5A 5FIGA 4EZQA 2ELBA 2FICA 3DPPA 2F7PA 2C08A 3RV1A 2NCZA 4R5IA 2Z0OA 5KBPA 3LVTA 4IWOA 2Z8YA 4JWCA 3VEBA 4AZHA 3D50A 4HYBA 2YI9A 3T4AG 4KIKB 4JNFA 3PLTA 1QWUA 3KAVA 3D4ZA 2D4CA 1PS3A 3Q0KA 3FD9A 5C5BB 4AZ5A 2X3XA 3BUPA 3EJRA 1I4DA 2YI8A 2EFLA 4EZTA 3BVTA 2QXLA 4NQIA 4AZ6A 1QWNA 2X5CA 1TQTA 3L3OM 2YL6A 1I49A 2GF4A 3CKDA 4PO2A 3OWGA 4R5GA 3VKHA 1ZYLA 2YL8A 1SU6A 1YWMA 2OZNB 1R33A 4EZRA 3EJQA 3ERCC 4EZOA 2OO2A 3DX0A 2PY6A 3QNIA 4DYLA 3I39X 4NSWA 1O7DB 4M0MA 3B51X 4HY9A 3EJTA 2PMRA 1X03A 4HR1B 4WPEA 2D1LA 2OW7A 3I2WA 3G9GA 2YIVX 3BUDA 3BLBA 2F7RA 1MJGA 2GAFD 2ND1A 3CAZA 2RT6A 1SU8A 4D8JA 3EJSA 4AZCB 4AZIA 5FLEX 1U00A 2YLAA 2JNSA 3O3NB 2RAIA 3CZNA 4UDYX 3Q84A 5C5BA 2N3KA 3QA8A 2Q12A 4AZ7A 1R34A 4EZUA 4B9QA 2F18A
chains in the Genus database with same CATH topology
4WPCA 1I4LA 4DCNC 1WDZA 1X03A 2C08A 3ABHA 2EFKA 3HAIA 2Q12A 3M3WA 2Z0VA 2RAJA 4WPEA 2RAKA 4NQIA 2D1LA 2X3WA 4H8SA 4AKVA 3OK8A 1Y2OA 1I4TA 3PLTA 3I2WA 3SOGA 2X3VA 2YKTA 3HAJA 2Q13A 3G9GA 4BNEA 2D4CA 3LLLA 3QE6A 4FZSA 5C5BB 3Q0KA 2Z0OA 1X04A 1I49A 3QNIA 3HAHA 1ZWWA 4AVMA 4NSWA 3SYVA 4DYLA 3QWEA 2RAIA 2Z0NA 2X3XA 4ATMA 1URUA 1I4DA 2V0OA 2ELBA 3ACOA 3DYTA 3Q84A 5C5BA 2FICA 4I1QA 3CAZA 2EFLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WPC A;  1I4L A;  4DCN C;  1WDZ A;  1X03 A;  2C08 A;  3ABH A;  2EFK A;  3HAI A;  2Q12 A;  3M3W A;  2Z0V A;  2RAJ A;  4WPE A;  2RAK A;  4NQI A;  2D1L A;  2X3W A;  4H8S A;  4AKV A;  3OK8 A;  1Y2O A;  1I4T A;  3PLT A;  3I2W A;  3SOG A;  2X3V A;  2YKT A;  3HAJ A;  2Q13 A;  3G9G A;  4BNE A;  2D4C A;  3LLL A;  3QE6 A;  4FZS A;  5C5B B;  3Q0K A;  2Z0O A;  1X04 A;  1I49 A;  3QNI A;  3HAH A;  1ZWW A;  4AVM A;  4NSW A;  3SYV A;  4DYL A;  3QWE A;  2RAI A;  2Z0N A;  2X3X A;  4ATM A;  1URU A;  1I4D A;  2V0O A;  2ELB A;  3ACO A;  3DYT A;  3Q84 A;  5C5B A;  2FIC A;  4I1Q A;  3CAZ A;  2EFL A; 
#chains in the Genus database with same CATH topology
 4WPC A;  3DDG A;  3GI7 A;  2YIA A;  3T47 A;  3BVU A;  1GN9 A;  3F7W A;  4AKV A;  1DKY A;  1E9V A;  2X3V A;  2FYV A;  2YL9 A;  2F1A A;  1E2U A;  4AZG A;  4BNE A;  5E84 A;  4FZS A;  4F00 A;  1HXK A;  3O3M B;  3L3P A;  4ATM A;  2V0O A;  1SUF A;  1OA0 A;  1TQU A;  1OA1 A;  1I4L A;  3BVW A;  3C7N A;  2EFK A;  3D4Y A;  2OW6 A;  1O7D C;  1DKZ A;  1GNL A;  3ER8 C;  4H8S A;  3EJU A;  3DDF A;  2QFF A;  3T48 A;  3EJP A;  1TQS A;  3KAW A;  3LLL A;  3BUB A;  4G6Q A;  1ZWW A;  3ZED A;  4JWD A;  2OBL A;  1DKX A;  1QX1 A;  3QNJ A;  4E81 A;  4EZX A;  2ND0 A;  3BUQ A;  1WDZ A;  4H6I A;  1JQK A;  2RAK A;  4AZB A;  3ER9 B;  2Q13 A;  2ZXQ A;  3B53 X;  4F01 A;  3QWE A;  4JWE A;  4FZO A;  3UIT A;  2YLL A;  3RPM A;  2X3W A;  4EZY A;  1I4T A;  3HAJ A;  3A98 A;  1SU7 A;  3CVR A;  2LM0 A;  5TKY A;  4KIK A;  4H6H A;  4JN4 A;  1URU A;  4JWI A;  1LQ7 A;  3HAI A;  3T49 A;  3I04 A;  4EZS A;  3M3W A;  3BVV A;  3OK8 A;  3SOG A;  2YKT A;  2F1B A;  3DX2 A;  1X04 A;  4R5J A;  2OBM A;  2YL5 A;  4UDX X;  4IWP A;  2WIN M;  3RV0 A;  2ALW A;  3KDR A;  4IM2 A;  2EWF A;  4EZW A;  2KHO A;  4E3C A;  4R5L A;  2RAJ A;  2EX3 B;  1R5E A;  3DX1 A;  3QE6 A;  3HAH A;  4IM3 A;  4AVM A;  2WYH A;  4NPH A;  3BVX A;  3DPQ A;  4IW0 A;  2F7Q A;  3DX4 A;  1TQV A;  4DCN C;  1OAO A;  3ABH A;  2WYI A;  4R5K A;  4FM3 A;  2GA9 D;  1HTY A;  1Y2O A;  3B52 X;  1W9M A;  4EZN A;  4EZV A;  4HR1 A;  3DPO A;  2LXY A;  3SYV A;  4FZP A;  3O3O B;  4I1Q A;  3OHX M;  3D52 A;  3VEA A;  3CZS A;  2Z0V A;  4EZP A;  3T46 A;  3LMF A;  1E1D A;  1GNT A;  4AZC A;  3D51 A;  4IWQ A;  4IM0 A;  2Z0N A;  3D2E A;  2O0I 1;  3DYT A;  3ACO A;  1UPX A;  1TQW A;  2F7O A;  4EZZ A;  4JLC A;  4JNE A;  2MI7 A;  3DX3 A;  1HWW A;  3D2F A;  2YIB A;  4JL9 A;  2QKW A;  3I01 A;  2JNK A;  3BUI A;  3CV5 A;  5FIG A;  4EZQ A;  2ELB A;  2FIC A;  3DPP A;  2F7P A;  2C08 A;  3RV1 A;  2NCZ A;  4R5I A;  2Z0O A;  5KBP A;  3LVT A;  4IWO A;  2Z8Y A;  4JWC A;  3VEB A;  4AZH A;  3D50 A;  4HYB A;  2YI9 A;  3T4A G;  4KIK B;  4JNF A;  3PLT A;  1QWU A;  3KAV A;  3D4Z A;  2D4C A;  1PS3 A;  3Q0K A;  3FD9 A;  5C5B B;  4AZ5 A;  2X3X A;  3BUP A;  3EJR A;  1I4D A;  2YI8 A;  2EFL A;  4EZT A;  3BVT A;  2QXL A;  4NQI A;  4AZ6 A;  1QWN A;  2X5C A;  1TQT A;  3L3O M;  2YL6 A;  1I49 A;  2GF4 A;  3CKD A;  4PO2 A;  3OWG A;  4R5G A;  3VKH A;  1ZYL A;  2YL8 A;  1SU6 A;  1YWM A;  2OZN B;  1R33 A;  4EZR A;  3EJQ A;  3ERC C;  4EZO A;  2OO2 A;  3DX0 A;  2PY6 A;  3QNI A;  4DYL A;  3I39 X;  4NSW A;  1O7D B;  4M0M A;  3B51 X;  4HY9 A;  3EJT A;  2PMR A;  1X03 A;  4HR1 B;  4WPE A;  2D1L A;  2OW7 A;  3I2W A;  3G9G A;  2YIV X;  3BUD A;  3BLB A;  2F7R A;  1MJG A;  2GAF D;  2ND1 A;  3CAZ A;  2RT6 A;  1SU8 A;  4D8J A;  3EJS A;  4AZC B;  4AZI A;  5FLE X;  1U00 A;  2YLA A;  2JNS A;  3O3N B;  2RAI A;  3CZN A;  4UDY X;  3Q84 A;  5C5B A;  2N3K A;  3QA8 A;  2Q12 A;  4AZ7 A;  1R34 A;  4EZU A;  4B9Q A;  2F18 A; 
#chains in the Genus database with same CATH homology
 4WPC A;  1I4L A;  4DCN C;  1WDZ A;  1X03 A;  2C08 A;  3ABH A;  2EFK A;  3HAI A;  2Q12 A;  3M3W A;  2Z0V A;  2RAJ A;  4WPE A;  2RAK A;  4NQI A;  2D1L A;  2X3W A;  4H8S A;  4AKV A;  3OK8 A;  1Y2O A;  1I4T A;  3PLT A;  3I2W A;  3SOG A;  2X3V A;  2YKT A;  3HAJ A;  2Q13 A;  3G9G A;  4BNE A;  2D4C A;  3LLL A;  3QE6 A;  4FZS A;  5C5B B;  3Q0K A;  2Z0O A;  1X04 A;  1I49 A;  3QNI A;  3HAH A;  1ZWW A;  4AVM A;  4NSW A;  3SYV A;  4DYL A;  3QWE A;  2RAI A;  2Z0N A;  2X3X A;  4ATM A;  1URU A;  1I4D A;  2V0O A;  2ELB A;  3ACO A;  3DYT A;  3Q84 A;  5C5B A;  2FIC A;  4I1Q A;  3CAZ A;  2EFL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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