3PMQA

Crystal structure of the outer membrane decaheme cytochrome mtrf
Total Genus 97
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
97
sequence length
593
structure length
593
Chain Sequence
NISVDKVAISDGIAQVDYQVSNQENQAVVGIPSATFIAAQLLPQGATGAGNSSEWQHFTSETCAASCPGTFVDHKNGHYSYRFSATFNGMNGVTFLSDATQRLVIKIGGDALADGTVLPITNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSISNCQTCHADNPDLADRQNWYRVPTMEACGACHTQINFPAGQGHPAQTDNSNCVACHNADWTANVHSNAAQTSALAQFNASISSASMDANGTITVAVSLTNPTTGTAYADSADKLKFISDLRIYANWGTSFDYSSRSARSIRLPESTPIAGSNGTYSYNISGLTVPAGTESDRGGLAIQGRVCAKDSVLVDCSTELAEVLVIKSSHSYFNMSALTTTGRREVISNAKCASCHGDQQLNIHGARNDLAGQCQLCHNPNMLADATATNPSMTSFDFKQLIHGLHSSQFAGFEDLNYPGNIGNCAQCHINDSTGISTVALPLNAAVQPLALNNGTFTSPIAAVCSNCHSSDATQNHMRQQGAVFAGTKADATAGTETCAFCHGQGTVADVLKVHPINKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords Decaheme cytochrome c MtrF
publication title Structure of a bacterial cell surface decaheme electron conduit.
pubmed doi rcsb
total genus 97
structure length 593
sequence length 593
ec nomenclature
pdb deposition date 2010-11-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.970.50 Alpha Beta 3-Layer(aba) Sandwich Ribonuclease HI; Chain A Ribonuclease HI; Chain A 3pmqA02
3PMQA
chains in the Genus database with same CATH superfamily
1QHKA 3GITA 3PMQA 5H3XA 2Z8YM 3I04M 1RU3A 1OAOC 3BL4A 3I01M 3DOAA 1MJGM 3BSUA
chains in the Genus database with same CATH topology
3PMQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PMQ A; 
#chains in the Genus database with same CATH topology
 1QHK A;  3GIT A;  3PMQ A;  5H3X A;  2Z8Y M;  3I04 M;  1RU3 A;  1OAO C;  3BL4 A;  3I01 M;  3DOA A;  1MJG M;  3BSU A; 
#chains in the Genus database with same CATH homology
 3PMQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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