3POXA

Crystal structure of e.coli ompf porin in lipidic cubic phase: space group p1
Total Genus 109
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
109
sequence length
340
structure length
340
Chain Sequence
AEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords OmpF protein
publication title Structure of Escherichia coli OmpF porin from lipidic mesophase.
pubmed doi rcsb
total genus 109
structure length 340
sequence length 340
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2010-11-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3poxA00
3PORA 4JFBA 2Y0KA 5PRNA 2ODJA 6PRNA 3FYXA 3T20A 3WI4A 1GFQA 3POUA 2K4TA 4AUIA 2FGRA 4KR8A 8PRNA 4FMSA 3SZDA 4FOZA 4FT6A 3SY7A 4RJXA 1E54A 2J4UP 3SYBA 5JDPA 4FRTA 3JTYA 2PRNA 4D5UA 4BUMX 3UU2A 1PRNA 1OSMA 3NSGA 3PRNA 3O0EA 4RJWA 3VY8X 4GCQA 1HXTA 2XE2A 4KR4A 3K19A 3VZWX 1HXUA 4LSIA 5DL6A 2PORA 1BT9A 5FVNA 1H6S1 7PRNA 3POQA 2FGQX 1PHOA 4LSEA 3SYSA 3SY9A 4LSHA 2XE5A 3HWBA 3HW9A 1OPFA 3T0SA 3EMNX 4D64A 2XE3A 1GFOA 2J1NA 4GCSA 2XG6A 1BH3A 3SZVA 2Y0HA 1MPFA 2O4VA 4FRXA 2ZLDA 1HXXA 3VY9X 4FSPA 2OMFA 5DL7A 1GFPA 4GCPA 2ZFGA 3POXA 4D65A 3VZUX 5DL8A 4KRAA 4FSOA 2XE1A 2Y2XA 3UPGA 2QTKA 3WI5A 3T24A 3A2SX 2Y0LA 4LSFA 5DL5A 1GFMA 4C69X 3VZTX 1GFNA
chains in the Genus database with same CATH superfamily
2KDYA 2R4NA 4RL9A 3PORA 3AAEB 4IL6O 2WVPA 2XMXA 4JFBA 2Y0KA 5GTIO 2KZ7B 2M07A 5PRNA 4FUVA 5D5DA 5G26A 2ODJA 3AA7B 3LK3A 3FYXA 6PRNA 3AA1A 5GTHO 3BRZA 3WI4A 1GFQA 3T20A 3HOEA 1IZNB 1BXWA 3DZMA 3POUA 2K4TA 3DA4A 5G3AA 1MM5A 5KAIO 4AUIA 2FGRA 3LK3B 3AA0A 4AKRB 4KR8A 5E79O 3KZIO 2R4LA 4E1TA 5GV0A 2XTRA 5B66O 8PRNA 4FMSA 3SZDA 4FOZA 4C00A 5EE2A 2MHLA 2F1TA 4AKMA 4FT6A 3PQSA 3SY7A 5ADXL 4RJXA 1E54A 2J4UP 1T1LA 3SYBA 4E1SA 1ORMA 5JDPA 3C5OA 4FRTA 3LK2B 2IWVA 2AXTO 3JTYA 2PRNA 4D5UA 2F1CX 4G76A 4UB8O 2WJQA 2YNKA 4FQEA 3RBHA 4BUMX 3DWOX 3UU2A 5B5EO 1THQA 1PRNA 1OSMA 3LK42 3LK41 3NSGA 3PRNA 4FZNA 4FZMA 2LFUA 3O0EA 3PF1A 3PGSA 4RJWA 4O3XB 3VY8X 2W80C 1ZHZA 4GCQA 5ADXK 1HXTA 2XE2A 3AA1B 4KR4A 5AFUL 3PGRA 2R89A 3K19A 3TZGA 1ZHWA 2MNHA 3VZWX 1HXUA 4LSIA 1QJ9A 2JQYA 2PORA 5DL6A 5G39A 4AYID 3V8UA 1BT9A 5FVNA 3AA0B 1H6S1 1ZHYA 7PRNA 2R8AA 4Z3TA 3NJTA 4AZLA 3UAQA 5KAFO 3POQA 2FGQX 3DA3A 2Y7SA 1PHOA 1S5LO 3A0BO 3AAAA 3HOLA 3QRAA 4JCHA 4LSEA 4N74A 4O3WA 2W81C 2M06A 3SYSA 4LSHA 4O49A 3SY9A 1Q9GA 4B61A 2X9KA 2XE5A 4AYDC 2YPVA 3HWBA 4RLCA 3VE2A 3VE1A 3HW9A 1ZHXA 4AYMC 4O3YA 1OPFA 3T0SA 4QQ1A 1MM4A 4AFKA 4C4VA 4G75A 4C4VB 3QRCA 3EMNX 4U9CA 4GHBA 3JCUO 4D64A 2XE3A 4O3ZA 1GFOA 2J1NA 4GCSA 4K3BA 2XG6A 4O4UA 1BH3A 3SZVA 2Y0HA 5TISO 1MPFA 1QJPA 2IWWA 5G38A 4RLBA 2KC0A 3WU2O 2O4VA 2R4PA 4FRXA 4AYEC 4GF4A 2ZLDA 2KZ7A 2F1VA 2LHFA 5H2FO 1HXXA 3VY9X 4FSPA 4CTDA 2OMFA 2JMMA 5DL7A 4AYNA 2N2LA 1GFPA 3AA6A 4XNLA 4GCPA 1IZNA 2ZFGA 3BS0A 3POXA 4PUXA 4UB6O 3VZUX 2WJRA 1P4TA 2ERVA 4D65A 5IYUA 4FZLA 3PQUA 5DL8A 4KRAA 4AKRA 1G90A 3KVDD 2XTQA 2GE4A 3AA6B 5AFUK 4FSOA 2X27X 4K3CA 2XE1A 3AAAB 2Y2XA 5T5FA 2KXPA 3UPGA 4XNKA 4F4BA 1YS5A 2QTKA 4O4XA 4N59A 4PR7A 3WI5A 4FESA 3T24A 1T16A 3A2SX 2KXPB 2Y0LA 4LSFA 4N58A 1Q9FA 5DL5A 3BRYA 3LK2A 1GFMA 2R4OA 3DWNA 3GP6A 2N2MA 2R88A 3A0HO 4C69X 3AAEA 1QJ8A 4N75A 4PJ0O 1ZHTA 3VZTX 2K0LA 3PGUA 1GFNA 3G7GA 3AA7A
chains in the Genus database with same CATH topology
2KDYA 4RL9A 3PORA 3AAEB 4JFBA 2XMXA 2Y0KA 2KZ7B 2M07A 5PRNA 4FUVA 5D5DA 5G26A 2ODJA 3AA7B 3LK3A 3FYXA 6PRNA 3AA1A 3T20A 3WI4A 1GFQA 3HOEA 1IZNB 1BXWA 3POUA 2K4TA 3DA4A 1MM5A 4AUIA 2FGRA 3LK3B 3AA0A 4AKRB 4KR8A 5GV0A 4E1TA 2XTRA 8PRNA 4FMSA 3SZDA 4FOZA 5EE2A 2MHLA 2F1TA 4AKMA 4FT6A 3PQSA 3SY7A 5ADXL 4RJXA 1E54A 2J4UP 3SYBA 4E1SA 1ORMA 5JDPA 3C5OA 4FRTA 3LK2B 3JTYA 2PRNA 4D5UA 4G76A 3RBHA 2YNKA 4BUMX 3UU2A 1THQA 1PRNA 1OSMA 3LK42 3LK41 3NSGA 3PRNA 4FZNA 4FZMA 2LFUA 3O0EA 4RJWA 4O3XB 3VY8X 2W80C 1ZHZA 4GCQA 5ADXK 1HXTA 2XE2A 3AA1B 4KR4A 5AFUL 3K19A 3TZGA 1ZHWA 2MNHA 3VZWX 1HXUA 4LSIA 1QJ9A 5DL6A 2PORA 4AYID 3V8UA 1BT9A 5FVNA 3AA0B 1H6S1 1ZHYA 7PRNA 4Z3TA 4AZLA 3UAQA 3POQA 2FGQX 3DA3A 2Y7SA 1PHOA 3AAAA 3QRAA 4LSEA 3HOLA 4O3WA 4JCHA 3SYSA 2W81C 2M06A 3SY9A 4LSHA 4O49A 4B61A 1Q9GA 2XE5A 4AYDC 2YPVA 3HWBA 4RLCA 3VE2A 3VE1A 3HW9A 1ZHXA 4AYMC 4O3YA 1OPFA 3T0SA 4QQ1A 1MM4A 4AFKA 4G75A 3QRCA 3EMNX 4U9CA 4GHBA 4D64A 2XE3A 4O3ZA 1GFOA 2J1NA 4GCSA 4O4UA 2XG6A 1BH3A 3SZVA 2Y0HA 1MPFA 1QJPA 4RLBA 2KC0A 4AYEC 2O4VA 4FRXA 4GF4A 2ZLDA 2KZ7A 2F1VA 2LHFA 1HXXA 3VY9X 4FSPA 2OMFA 2JMMA 5DL7A 4AYNA 2N2LA 1GFPA 3AA6A 4XNLA 4GCPA 1IZNA 2ZFGA 3POXA 4PUXA 4D65A 3VZUX 5IYUA 1P4TA 2ERVA 4FZLA 3PQUA 5DL8A 4KRAA 4AKRA 1G90A 3KVDD 2XTQA 2GE4A 3AA6B 5AFUK 4FSOA 2X27X 2XE1A 3AAAB 2Y2XA 5T5FA 2KXPA 3UPGA 4XNKA 4F4BA 1YS5A 2QTKA 4O4XA 4N59A 3WI5A 4FESA 3T24A 3A2SX 2KXPB 2Y0LA 4LSFA 4N58A 1Q9FA 5DL5A 3LK2A 1GFMA 3GP6A 2N2MA 4C69X 3AAEA 1QJ8A 1ZHTA 3VZTX 2K0LA 1GFNA 3G7GA 3AA7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3POR A;  4JFB A;  2Y0K A;  5PRN A;  2ODJ A;  6PRN A;  3FYX A;  3T20 A;  3WI4 A;  1GFQ A;  3POU A;  2K4T A;  4AUI A;  2FGR A;  4KR8 A;  8PRN A;  4FMS A;  3SZD A;  4FOZ A;  4FT6 A;  3SY7 A;  4RJX A;  1E54 A;  2J4U P;  3SYB A;  5JDP A;  4FRT A;  3JTY A;  2PRN A;  4D5U A;  4BUM X;  3UU2 A;  1PRN A;  1OSM A;  3NSG A;  3PRN A;  3O0E A;  4RJW A;  3VY8 X;  4GCQ A;  1HXT A;  2XE2 A;  4KR4 A;  3K19 A;  3VZW X;  1HXU A;  4LSI A;  5DL6 A;  2POR A;  1BT9 A;  5FVN A;  1H6S 1;  7PRN A;  3POQ A;  2FGQ X;  1PHO A;  4LSE A;  3SYS A;  3SY9 A;  4LSH A;  2XE5 A;  3HWB A;  3HW9 A;  1OPF A;  3T0S A;  3EMN X;  4D64 A;  2XE3 A;  1GFO A;  2J1N A;  4GCS A;  2XG6 A;  1BH3 A;  3SZV A;  2Y0H A;  1MPF A;  2O4V A;  4FRX A;  2ZLD A;  1HXX A;  3VY9 X;  4FSP A;  2OMF A;  5DL7 A;  1GFP A;  4GCP A;  2ZFG A;  3POX A;  4D65 A;  3VZU X;  5DL8 A;  4KRA A;  4FSO A;  2XE1 A;  2Y2X A;  3UPG A;  2QTK A;  3WI5 A;  3T24 A;  3A2S X;  2Y0L A;  4LSF A;  5DL5 A;  1GFM A;  4C69 X;  3VZT X;  1GFN A; 
#chains in the Genus database with same CATH topology
 2KDY A;  2R4N A;  4RL9 A;  3POR A;  3AAE B;  4IL6 O;  2WVP A;  2XMX A;  4JFB A;  2Y0K A;  5GTI O;  2KZ7 B;  2M07 A;  5PRN A;  4FUV A;  5D5D A;  5G26 A;  2ODJ A;  3AA7 B;  3LK3 A;  3FYX A;  6PRN A;  3AA1 A;  5GTH O;  3BRZ A;  3WI4 A;  1GFQ A;  3T20 A;  3HOE A;  1IZN B;  1BXW A;  3DZM A;  3POU A;  2K4T A;  3DA4 A;  5G3A A;  1MM5 A;  5KAI O;  4AUI A;  2FGR A;  3LK3 B;  3AA0 A;  4AKR B;  4KR8 A;  5E79 O;  3KZI O;  2R4L A;  4E1T A;  5GV0 A;  2XTR A;  5B66 O;  8PRN A;  4FMS A;  3SZD A;  4FOZ A;  4C00 A;  5EE2 A;  2MHL A;  2F1T A;  4AKM A;  4FT6 A;  3PQS A;  3SY7 A;  5ADX L;  4RJX A;  1E54 A;  2J4U P;  1T1L A;  3SYB A;  4E1S A;  1ORM A;  5JDP A;  3C5O A;  4FRT A;  3LK2 B;  2IWV A;  2AXT O;  3JTY A;  2PRN A;  4D5U A;  2F1C X;  4G76 A;  4UB8 O;  2WJQ A;  2YNK A;  4FQE A;  3RBH A;  4BUM X;  3DWO X;  3UU2 A;  5B5E O;  1THQ A;  1PRN A;  1OSM A;  3LK4 2;  3LK4 1;  3NSG A;  3PRN A;  4FZN A;  4FZM A;  2LFU A;  3O0E A;  3PF1 A;  3PGS A;  4RJW A;  4O3X B;  3VY8 X;  2W80 C;  1ZHZ A;  4GCQ A;  5ADX K;  1HXT A;  2XE2 A;  3AA1 B;  4KR4 A;  5AFU L;  3PGR A;  2R89 A;  3K19 A;  3TZG A;  1ZHW A;  2MNH A;  3VZW X;  1HXU A;  4LSI A;  1QJ9 A;  2JQY A;  2POR A;  5DL6 A;  5G39 A;  4AYI D;  3V8U A;  1BT9 A;  5FVN A;  3AA0 B;  1H6S 1;  1ZHY A;  7PRN A;  2R8A A;  4Z3T A;  3NJT A;  4AZL A;  3UAQ A;  5KAF O;  3POQ A;  2FGQ X;  3DA3 A;  2Y7S A;  1PHO A;  1S5L O;  3A0B O;  3AAA A;  3HOL A;  3QRA A;  4JCH A;  4LSE A;  4N74 A;  4O3W A;  2W81 C;  2M06 A;  3SYS A;  4LSH A;  4O49 A;  3SY9 A;  1Q9G A;  4B61 A;  2X9K A;  2XE5 A;  4AYD C;  2YPV A;  3HWB A;  4RLC A;  3VE2 A;  3VE1 A;  3HW9 A;  1ZHX A;  4AYM C;  4O3Y A;  1OPF A;  3T0S A;  4QQ1 A;  1MM4 A;  4AFK A;  4C4V A;  4G75 A;  4C4V B;  3QRC A;  3EMN X;  4U9C A;  4GHB A;  3JCU O;  4D64 A;  2XE3 A;  4O3Z A;  1GFO A;  2J1N A;  4GCS A;  4K3B A;  2XG6 A;  4O4U A;  1BH3 A;  3SZV A;  2Y0H A;  5TIS O;  1MPF A;  1QJP A;  2IWW A;  5G38 A;  4RLB A;  2KC0 A;  3WU2 O;  2O4V A;  2R4P A;  4FRX A;  4AYE C;  4GF4 A;  2ZLD A;  2KZ7 A;  2F1V A;  2LHF A;  5H2F O;  1HXX A;  3VY9 X;  4FSP A;  4CTD A;  2OMF A;  2JMM A;  5DL7 A;  4AYN A;  2N2L A;  1GFP A;  3AA6 A;  4XNL A;  4GCP A;  1IZN A;  2ZFG A;  3BS0 A;  3POX A;  4PUX A;  4UB6 O;  3VZU X;  2WJR A;  1P4T A;  2ERV A;  4D65 A;  5IYU A;  4FZL A;  3PQU A;  5DL8 A;  4KRA A;  4AKR A;  1G90 A;  3KVD D;  2XTQ A;  2GE4 A;  3AA6 B;  5AFU K;  4FSO A;  2X27 X;  4K3C A;  2XE1 A;  3AAA B;  2Y2X A;  5T5F A;  2KXP A;  3UPG A;  4XNK A;  4F4B A;  1YS5 A;  2QTK A;  4O4X A;  4N59 A;  4PR7 A;  3WI5 A;  4FES A;  3T24 A;  1T16 A;  3A2S X;  2KXP B;  2Y0L A;  4LSF A;  4N58 A;  1Q9F A;  5DL5 A;  3BRY A;  3LK2 A;  1GFM A;  2R4O A;  3DWN A;  3GP6 A;  2N2M A;  2R88 A;  3A0H O;  4C69 X;  3AAE A;  1QJ8 A;  4N75 A;  4PJ0 O;  1ZHT A;  3VZT X;  2K0L A;  3PGU A;  1GFN A;  3G7G A;  3AA7 A; 
#chains in the Genus database with same CATH homology
 2KDY A;  4RL9 A;  3POR A;  3AAE B;  4JFB A;  2XMX A;  2Y0K A;  2KZ7 B;  2M07 A;  5PRN A;  4FUV A;  5D5D A;  5G26 A;  2ODJ A;  3AA7 B;  3LK3 A;  3FYX A;  6PRN A;  3AA1 A;  3T20 A;  3WI4 A;  1GFQ A;  3HOE A;  1IZN B;  1BXW A;  3POU A;  2K4T A;  3DA4 A;  1MM5 A;  4AUI A;  2FGR A;  3LK3 B;  3AA0 A;  4AKR B;  4KR8 A;  5GV0 A;  4E1T A;  2XTR A;  8PRN A;  4FMS A;  3SZD A;  4FOZ A;  5EE2 A;  2MHL A;  2F1T A;  4AKM A;  4FT6 A;  3PQS A;  3SY7 A;  5ADX L;  4RJX A;  1E54 A;  2J4U P;  3SYB A;  4E1S A;  1ORM A;  5JDP A;  3C5O A;  4FRT A;  3LK2 B;  3JTY A;  2PRN A;  4D5U A;  4G76 A;  3RBH A;  2YNK A;  4BUM X;  3UU2 A;  1THQ A;  1PRN A;  1OSM A;  3LK4 2;  3LK4 1;  3NSG A;  3PRN A;  4FZN A;  4FZM A;  2LFU A;  3O0E A;  4RJW A;  4O3X B;  3VY8 X;  2W80 C;  1ZHZ A;  4GCQ A;  5ADX K;  1HXT A;  2XE2 A;  3AA1 B;  4KR4 A;  5AFU L;  3K19 A;  3TZG A;  1ZHW A;  2MNH A;  3VZW X;  1HXU A;  4LSI A;  1QJ9 A;  5DL6 A;  2POR A;  4AYI D;  3V8U A;  1BT9 A;  5FVN A;  3AA0 B;  1H6S 1;  1ZHY A;  7PRN A;  4Z3T A;  4AZL A;  3UAQ A;  3POQ A;  2FGQ X;  3DA3 A;  2Y7S A;  1PHO A;  3AAA A;  3QRA A;  4LSE A;  3HOL A;  4O3W A;  4JCH A;  3SYS A;  2W81 C;  2M06 A;  3SY9 A;  4LSH A;  4O49 A;  4B61 A;  1Q9G A;  2XE5 A;  4AYD C;  2YPV A;  3HWB A;  4RLC A;  3VE2 A;  3VE1 A;  3HW9 A;  1ZHX A;  4AYM C;  4O3Y A;  1OPF A;  3T0S A;  4QQ1 A;  1MM4 A;  4AFK A;  4G75 A;  3QRC A;  3EMN X;  4U9C A;  4GHB A;  4D64 A;  2XE3 A;  4O3Z A;  1GFO A;  2J1N A;  4GCS A;  4O4U A;  2XG6 A;  1BH3 A;  3SZV A;  2Y0H A;  1MPF A;  1QJP A;  4RLB A;  2KC0 A;  4AYE C;  2O4V A;  4FRX A;  4GF4 A;  2ZLD A;  2KZ7 A;  2F1V A;  2LHF A;  1HXX A;  3VY9 X;  4FSP A;  2OMF A;  2JMM A;  5DL7 A;  4AYN A;  2N2L A;  1GFP A;  3AA6 A;  4XNL A;  4GCP A;  1IZN A;  2ZFG A;  3POX A;  4PUX A;  4D65 A;  3VZU X;  5IYU A;  1P4T A;  2ERV A;  4FZL A;  3PQU A;  5DL8 A;  4KRA A;  4AKR A;  1G90 A;  3KVD D;  2XTQ A;  2GE4 A;  3AA6 B;  5AFU K;  4FSO A;  2X27 X;  2XE1 A;  3AAA B;  2Y2X A;  5T5F A;  2KXP A;  3UPG A;  4XNK A;  4F4B A;  1YS5 A;  2QTK A;  4O4X A;  4N59 A;  3WI5 A;  4FES A;  3T24 A;  3A2S X;  2KXP B;  2Y0L A;  4LSF A;  4N58 A;  1Q9F A;  5DL5 A;  3LK2 A;  1GFM A;  3GP6 A;  2N2M A;  4C69 X;  3AAE A;  1QJ8 A;  1ZHT A;  3VZT X;  2K0L A;  1GFN A;  3G7G A;  3AA7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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